Wall clock time and date at job start Mon Mar 30 2020 02:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99714 * 2 1 4 4 H 1.48499 * 109.47070 * 239.99864 * 3 2 1 5 5 H 1.48502 * 109.47507 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47275 * 119.99877 * 3 2 1 7 7 C 1.37870 * 120.00360 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00345 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99892 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.26579 * 307.41362 * 9 7 2 11 11 N 1.46525 * 110.30079 * 69.58474 * 9 7 2 12 12 C 1.39579 * 110.08721 * 118.92789 * 11 9 7 13 13 C 1.39674 * 129.32311 * 180.02562 * 12 11 9 14 14 C 1.37828 * 120.28572 * 179.97438 * 13 12 11 15 15 C 1.38308 * 120.22752 * 359.97438 * 14 13 12 16 16 C 1.38237 * 119.83117 * 0.02562 * 15 14 13 17 17 C 1.38163 * 120.15311 * 0.02562 * 16 15 14 18 18 C 1.51218 * 130.98692 * 180.02562 * 17 16 15 19 19 H 1.09002 * 110.52397 * 298.79410 * 18 17 16 20 20 C 1.50695 * 110.42379 * 61.21372 * 18 17 16 21 21 O 1.20831 * 119.99774 * 20.36305 * 20 18 17 22 22 O 1.34229 * 120.00268 * 200.36384 * 20 18 17 23 23 H 0.97000 * 120.00312 * 0.02562 * 1 2 3 24 24 H 0.96999 * 124.96178 * 298.89021 * 11 9 7 25 25 H 1.08010 * 119.85901 * 359.97438 * 13 12 11 26 26 H 1.07999 * 119.89039 * 179.97438 * 14 13 12 27 27 H 1.07996 * 120.08222 * 180.02562 * 15 14 13 28 28 H 1.08000 * 119.91870 * 180.02562 * 16 15 14 29 29 H 0.96704 * 117.00084 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5240 -2.5153 0.8124 11 7 0.5823 -2.7000 -1.2876 12 6 1.0639 -3.8568 -1.9026 13 6 0.7082 -4.4203 -3.1301 14 6 1.3107 -5.5822 -3.5622 15 6 2.2731 -6.1988 -2.7833 16 6 2.6306 -5.6472 -1.5672 17 6 2.0286 -4.4833 -1.1293 18 6 2.2272 -3.6793 0.1360 19 1 1.9815 -4.2791 1.0124 20 6 3.6458 -3.1786 0.2237 21 8 4.3250 -3.1100 -0.7733 22 8 4.1550 -2.8089 1.4094 23 1 -0.4850 0.8400 -0.0004 24 1 -0.0965 -2.1149 -1.6587 25 1 -0.0423 -3.9436 -3.7433 26 1 1.0305 -6.0126 -4.5122 27 1 2.7440 -7.1089 -3.1244 28 1 3.3821 -6.1273 -0.9581 29 1 5.0696 -2.4948 1.4157 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709947700.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:16 Heat of formation + Delta-G solvation = -58.798478 kcal Electronic energy + Delta-G solvation = -16329.559692 eV Core-core repulsion = 13603.315993 eV Total energy + Delta-G solvation = -2726.243699 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.24757 -38.57450 -35.67182 -35.19585 -32.60211 -31.39263 -28.78515 -28.27085 -25.34871 -22.81368 -21.64860 -20.80482 -19.60087 -17.58056 -16.80948 -16.58106 -15.51385 -15.22052 -14.80543 -14.36632 -14.31756 -13.17531 -13.08931 -12.82891 -12.34066 -12.12229 -11.75133 -11.67938 -11.10228 -10.98672 -10.82723 -10.62720 -10.32227 -10.19690 -9.85068 -9.67579 -9.01681 -8.78699 -8.16005 -6.51123 -6.18123 -4.45457 2.04868 2.38862 3.13298 3.18415 3.22920 3.27241 3.87730 4.21867 4.45323 4.67279 5.18158 5.26501 5.58012 5.65981 5.78100 5.91888 6.07639 6.20863 6.24710 6.51990 6.67909 6.99649 7.14761 7.20837 7.24512 7.28296 7.54105 7.61824 7.82551 8.20026 8.59570 8.76942 9.03183 9.26336 10.71704 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.028198 B = 0.010295 C = 0.008412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.737809 B = 2719.063637 C = 3327.678284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.078 3.922 3 Si 0.899 3.101 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.278 3.722 10 H 0.062 0.938 11 N -0.705 5.705 12 C 0.229 3.771 13 C -0.210 4.210 14 C -0.067 4.067 15 C -0.209 4.209 16 C -0.042 4.042 17 C -0.176 4.176 18 C -0.038 4.038 19 H 0.098 0.902 20 C 0.517 3.483 21 O -0.524 6.524 22 O -0.517 6.517 23 H 0.269 0.731 24 H 0.411 0.589 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.221 -7.185 -0.519 7.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.127 4.127 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.177 3.823 10 H 0.080 0.920 11 N -0.329 5.329 12 C 0.117 3.883 13 C -0.234 4.234 14 C -0.086 4.086 15 C -0.230 4.230 16 C -0.060 4.060 17 C -0.182 4.182 18 C -0.058 4.058 19 H 0.116 0.884 20 C 0.360 3.640 21 O -0.412 6.412 22 O -0.327 6.327 23 H 0.078 0.922 24 H 0.249 0.751 25 H 0.127 0.873 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.124 0.876 29 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.797 -7.014 -0.602 7.266 hybrid contribution 0.807 1.530 -0.263 1.750 sum 2.604 -5.484 -0.865 6.132 Atomic orbital electron populations 1.69870 1.05983 1.27806 1.48483 1.24993 0.94949 0.99629 0.93138 0.86525 0.79719 0.82089 0.79082 1.19978 1.20925 1.19722 1.21452 0.92937 0.90316 1.52675 0.91657 1.18990 0.89356 0.90246 0.83749 0.92047 1.46054 1.42551 1.22724 1.21602 1.18630 0.91197 0.86943 0.91493 1.20214 1.06640 0.99804 0.96760 1.20586 0.95411 0.94416 0.98175 1.20488 1.03396 1.02498 0.96602 1.20149 0.96799 0.93614 0.95483 1.19333 1.02995 0.98373 0.97513 1.20544 0.89962 0.97973 0.97283 0.88402 1.22869 0.89042 0.72115 0.79941 1.90642 1.61293 1.52106 1.37149 1.84607 1.34336 1.77496 1.36293 0.92175 0.75066 0.87288 0.87090 0.87187 0.87605 0.74775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.41 12.96 55.43 0.72 -22.69 15 2 C 0.08 2.04 5.45 -17.82 -0.10 1.95 15 3 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 15 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 7 C -0.54 -14.05 8.14 -34.44 -0.28 -14.33 15 8 H 0.07 1.76 5.25 -52.48 -0.28 1.49 15 9 C 0.28 6.66 3.41 -68.68 -0.23 6.43 15 10 H 0.06 1.53 8.14 -51.93 -0.42 1.11 15 11 N -0.70 -16.20 6.06 -52.79 -0.32 -16.52 15 12 C 0.23 4.92 7.03 -83.66 -0.59 4.33 15 13 C -0.21 -3.95 10.07 -39.20 -0.39 -4.35 15 14 C -0.07 -1.12 10.02 -39.71 -0.40 -1.52 15 15 C -0.21 -3.51 10.06 -39.56 -0.40 -3.91 15 16 C -0.04 -0.77 10.00 -39.61 -0.40 -1.17 15 17 C -0.18 -3.69 4.94 -104.26 -0.51 -4.21 15 18 C -0.04 -0.81 3.54 -92.28 -0.33 -1.13 15 19 H 0.10 1.82 8.14 -51.93 -0.42 1.40 15 20 C 0.52 11.12 4.84 36.00 0.17 11.30 15 21 O -0.52 -12.59 16.84 -18.75 -0.32 -12.91 15 22 O -0.52 -9.43 13.11 -39.26 -0.51 -9.95 15 23 H 0.27 6.81 8.31 -40.82 -0.34 6.47 15 24 H 0.41 9.49 8.71 -40.82 -0.36 9.13 15 25 H 0.11 1.85 8.06 -52.48 -0.42 1.43 15 26 H 0.11 1.50 8.06 -52.49 -0.42 1.07 15 27 H 0.11 1.53 8.06 -52.49 -0.42 1.11 15 28 H 0.11 1.74 8.06 -52.49 -0.42 1.32 15 29 H 0.40 5.34 9.10 45.56 0.41 5.76 15 LS Contribution 257.22 15.07 3.88 3.88 Total: -1.00 -29.76 257.22 -6.92 -36.68 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -1.89 Total: 12.47 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -3.45 Total: -6.61 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.40 Total: -39.21 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.83 Total: -22.86 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.76 -6.92 -36.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709947700.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.123 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds