Wall clock time and date at job start Mon Mar 30 2020 02:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99714 * 2 1 4 4 H 1.48499 * 109.47070 * 239.99864 * 3 2 1 5 5 H 1.48502 * 109.47507 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47275 * 119.99877 * 3 2 1 7 7 C 1.37870 * 120.00360 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00345 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99892 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.26579 * 307.41362 * 9 7 2 11 11 N 1.46525 * 110.30079 * 69.58474 * 9 7 2 12 12 C 1.39579 * 110.08721 * 118.92789 * 11 9 7 13 13 C 1.39674 * 129.32311 * 180.02562 * 12 11 9 14 14 C 1.37828 * 120.28572 * 179.97438 * 13 12 11 15 15 C 1.38308 * 120.22752 * 359.97438 * 14 13 12 16 16 C 1.38237 * 119.83117 * 0.02562 * 15 14 13 17 17 C 1.38163 * 120.15311 * 0.02562 * 16 15 14 18 18 C 1.51218 * 130.98692 * 180.02562 * 17 16 15 19 19 H 1.09002 * 110.52397 * 298.79410 * 18 17 16 20 20 C 1.50695 * 110.42379 * 61.21372 * 18 17 16 21 21 O 1.20831 * 119.99774 * 20.36305 * 20 18 17 22 22 O 1.34229 * 120.00268 * 200.36384 * 20 18 17 23 23 H 0.97000 * 120.00312 * 0.02562 * 1 2 3 24 24 H 0.96999 * 124.96178 * 298.89021 * 11 9 7 25 25 H 1.08010 * 119.85901 * 359.97438 * 13 12 11 26 26 H 1.07999 * 119.89039 * 179.97438 * 14 13 12 27 27 H 1.07996 * 120.08222 * 180.02562 * 15 14 13 28 28 H 1.08000 * 119.91870 * 180.02562 * 16 15 14 29 29 H 0.96704 * 117.00084 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5240 -2.5153 0.8124 11 7 0.5823 -2.7000 -1.2876 12 6 1.0639 -3.8568 -1.9026 13 6 0.7082 -4.4203 -3.1301 14 6 1.3107 -5.5822 -3.5622 15 6 2.2731 -6.1988 -2.7833 16 6 2.6306 -5.6472 -1.5672 17 6 2.0286 -4.4833 -1.1293 18 6 2.2272 -3.6793 0.1360 19 1 1.9815 -4.2791 1.0124 20 6 3.6458 -3.1786 0.2237 21 8 4.3250 -3.1100 -0.7733 22 8 4.1550 -2.8089 1.4094 23 1 -0.4850 0.8400 -0.0004 24 1 -0.0965 -2.1149 -1.6587 25 1 -0.0423 -3.9436 -3.7433 26 1 1.0305 -6.0126 -4.5122 27 1 2.7440 -7.1089 -3.1244 28 1 3.3821 -6.1273 -0.9581 29 1 5.0696 -2.4948 1.4157 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709947700.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:16 Heat of formation + Delta-G solvation = -78.651187 kcal Electronic energy + Delta-G solvation = -16330.420570 eV Core-core repulsion = 13603.315993 eV Total energy + Delta-G solvation = -2727.104578 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.86514 -40.14206 -37.23593 -36.83561 -34.50660 -32.94829 -30.41909 -29.79753 -27.17914 -24.46905 -23.20711 -22.36735 -21.17578 -19.32741 -18.57436 -18.15963 -17.17179 -16.91208 -16.32947 -16.11834 -15.89783 -14.89453 -14.56186 -14.34516 -14.05508 -13.74061 -13.40177 -13.28657 -12.86511 -12.62683 -12.45364 -12.31803 -12.10961 -11.65380 -11.61961 -11.39618 -10.80940 -10.63019 -9.58628 -8.39865 -7.88425 -6.47507 0.61362 0.93334 1.34784 1.36376 1.43193 1.45914 2.29396 2.39277 2.73531 3.18540 3.32799 3.71309 4.02017 4.29058 4.37588 4.39229 4.60990 4.76541 4.84917 5.02668 5.19219 5.27595 5.54160 5.66396 5.77152 5.78090 5.84459 5.89979 6.15320 6.48180 6.71682 7.20678 7.23871 7.35381 8.74313 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.028198 B = 0.010295 C = 0.008412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.737809 B = 2719.063637 C = 3327.678284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.037 3.963 3 Si 0.952 3.048 4 H -0.284 1.284 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.551 4.551 8 H 0.055 0.945 9 C 0.279 3.721 10 H 0.039 0.961 11 N -0.720 5.720 12 C 0.195 3.805 13 C -0.217 4.217 14 C -0.064 4.064 15 C -0.197 4.197 16 C -0.053 4.053 17 C -0.195 4.195 18 C -0.041 4.041 19 H 0.118 0.882 20 C 0.521 3.479 21 O -0.554 6.554 22 O -0.510 6.510 23 H 0.270 0.730 24 H 0.404 0.596 25 H 0.121 0.879 26 H 0.151 0.849 27 H 0.147 0.853 28 H 0.124 0.876 29 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.030 -8.448 -1.289 9.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.166 4.166 3 Si 0.777 3.223 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.073 0.927 9 C 0.176 3.824 10 H 0.057 0.943 11 N -0.346 5.346 12 C 0.086 3.914 13 C -0.241 4.241 14 C -0.082 4.082 15 C -0.218 4.218 16 C -0.072 4.072 17 C -0.201 4.201 18 C -0.061 4.061 19 H 0.136 0.864 20 C 0.366 3.634 21 O -0.444 6.444 22 O -0.323 6.323 23 H 0.079 0.921 24 H 0.241 0.759 25 H 0.139 0.861 26 H 0.169 0.831 27 H 0.165 0.835 28 H 0.142 0.858 29 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 2.629 -8.306 -1.358 8.818 hybrid contribution 0.590 1.803 -0.059 1.898 sum 3.219 -6.503 -1.418 7.394 Atomic orbital electron populations 1.69949 1.06796 1.28333 1.49097 1.25627 0.95706 1.02169 0.93076 0.85708 0.78685 0.79186 0.78712 1.20955 1.20089 1.18894 1.21667 0.92661 0.91780 1.52823 0.92709 1.18760 0.89292 0.90607 0.83754 0.94311 1.45757 1.43261 1.23867 1.21678 1.18974 0.92413 0.87000 0.92978 1.20549 1.07012 1.00592 0.95911 1.21063 0.94407 0.93232 0.99508 1.21000 1.02324 1.03072 0.95373 1.20496 0.97060 0.92989 0.96608 1.19531 1.03666 0.99461 0.97399 1.20538 0.89368 0.97401 0.98792 0.86392 1.22883 0.88972 0.71482 0.80082 1.90615 1.62101 1.53493 1.38240 1.84548 1.36110 1.76928 1.34675 0.92113 0.75867 0.86142 0.83148 0.83493 0.85795 0.72294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.75 12.96 21.45 0.28 -48.47 15 2 C 0.04 1.96 5.45 84.65 0.46 2.42 15 3 Si 0.95 42.63 29.54 68.60 2.03 44.66 15 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 15 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 15 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 15 7 C -0.55 -29.43 8.14 25.60 0.21 -29.22 15 8 H 0.06 2.99 5.25 -2.91 -0.02 2.98 15 9 C 0.28 13.69 3.41 44.50 0.15 13.84 15 10 H 0.04 2.03 8.14 -2.39 -0.02 2.01 15 11 N -0.72 -34.00 6.06 -320.93 -1.95 -35.95 15 12 C 0.20 8.36 7.03 38.34 0.27 8.63 15 13 C -0.22 -7.83 10.07 22.52 0.23 -7.60 15 14 C -0.06 -1.90 10.02 22.19 0.22 -1.67 15 15 C -0.20 -5.86 10.06 22.29 0.22 -5.64 15 16 C -0.05 -1.84 10.00 22.25 0.22 -1.61 15 17 C -0.20 -8.03 4.94 -19.63 -0.10 -8.13 15 18 C -0.04 -1.77 3.54 -11.87 -0.04 -1.81 15 19 H 0.12 4.38 8.14 -2.39 -0.02 4.36 15 20 C 0.52 22.24 4.84 71.23 0.34 22.58 15 21 O -0.55 -26.46 16.84 21.95 0.37 -26.09 15 22 O -0.51 -18.13 13.11 -51.41 -0.67 -18.81 15 23 H 0.27 13.85 8.31 -92.71 -0.77 13.08 15 24 H 0.40 19.43 8.71 -92.71 -0.81 18.62 15 25 H 0.12 3.94 8.06 -2.91 -0.02 3.92 15 26 H 0.15 3.28 8.06 -2.91 -0.02 3.26 15 27 H 0.15 3.29 8.06 -2.91 -0.02 3.26 15 28 H 0.12 3.76 8.06 -2.91 -0.02 3.73 15 29 H 0.42 10.67 9.10 -74.05 -0.67 10.00 15 Total: -1.00 -63.81 257.22 1.97 -61.84 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: -0.28 Total: 31.01 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 2.19 Total: -8.20 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -1.67 Total: -84.41 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -0.30 Total: -44.89 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -63.81 1.97 -61.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709947700.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.812 kcal (2) G-P(sol) polarization free energy of solvation -63.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds