Wall clock time and date at job start Mon Mar 30 2020 02:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00362 * 2 1 4 4 H 1.48496 * 109.47634 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47276 * 299.99912 * 3 2 1 6 6 H 1.48501 * 109.47255 * 59.99635 * 3 2 1 7 7 C 1.37881 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00161 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99650 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.34394 * 299.33067 * 9 7 2 11 11 N 1.46534 * 110.30236 * 61.45222 * 9 7 2 12 12 C 1.39579 * 110.08729 * 118.92607 * 11 9 7 13 13 C 1.39670 * 129.32345 * 180.02562 * 12 11 9 14 14 C 1.37828 * 120.28297 * 179.97438 * 13 12 11 15 15 C 1.38304 * 120.23279 * 0.02562 * 14 13 12 16 16 C 1.38229 * 119.82999 * 359.97438 * 15 14 13 17 17 C 1.38175 * 120.15578 * 359.97438 * 16 15 14 18 18 C 1.51216 * 130.98974 * 179.71153 * 17 16 15 19 19 H 1.09007 * 110.41900 * 61.23426 * 18 17 16 20 20 C 1.50705 * 110.42300 * 298.76538 * 18 17 16 21 21 O 1.20821 * 119.99672 * 241.45105 * 20 18 17 22 22 O 1.34226 * 119.99974 * 61.45168 * 20 18 17 23 23 H 0.97004 * 119.99597 * 0.02562 * 1 2 3 24 24 H 0.96997 * 124.95525 * 298.92307 * 11 9 7 25 25 H 1.08003 * 119.85777 * 359.97438 * 13 12 11 26 26 H 1.08003 * 119.88561 * 180.02562 * 14 13 12 27 27 H 1.08000 * 120.08327 * 180.02562 * 15 14 13 28 28 H 1.07999 * 119.92508 * 180.02562 * 16 15 14 29 29 H 0.96693 * 117.00215 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6276 -2.5768 0.8913 11 7 0.4284 -2.6113 -1.2070 12 6 0.8259 -3.7196 -1.9566 13 6 0.3200 -4.1964 -3.1680 14 6 0.8600 -5.3222 -3.7517 15 6 1.9070 -5.9888 -3.1417 16 6 2.4133 -5.5232 -1.9427 17 6 1.8761 -4.3944 -1.3541 18 6 2.2280 -3.6844 -0.0661 19 1 3.2572 -3.3269 -0.0979 20 6 2.0247 -4.6015 1.1124 21 8 1.2241 -4.3140 1.9704 22 8 2.7331 -5.7375 1.2088 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2878 -2.0040 -1.4499 25 1 -0.4978 -3.6807 -3.6493 26 1 0.4641 -5.6851 -4.6887 27 1 2.3286 -6.8705 -3.6014 28 1 3.2311 -6.0423 -1.4653 29 1 2.5678 -6.2936 1.9823 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709947719.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:21 Heat of formation + Delta-G solvation = -82.445500 kcal Electronic energy + Delta-G solvation = -16140.708467 eV Core-core repulsion = 13413.439356 eV Total energy + Delta-G solvation = -2727.269111 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.85500 -40.26297 -37.46502 -36.79454 -34.45572 -33.00978 -30.29281 -29.78868 -27.34010 -24.40605 -23.18072 -22.21303 -21.23578 -19.31641 -18.69548 -18.23089 -17.23591 -16.93958 -16.59295 -15.96218 -15.72847 -14.89674 -14.52796 -14.34491 -14.13206 -13.74073 -13.45144 -13.09851 -12.86454 -12.62769 -12.54158 -12.50118 -12.05326 -11.82132 -11.56572 -11.47173 -10.78189 -10.57852 -9.56653 -8.35985 -7.87676 -6.44272 0.59422 0.94289 1.26240 1.37775 1.40145 1.51927 2.15200 2.37114 2.81351 3.15902 3.32481 3.79078 3.83520 4.35723 4.40337 4.49633 4.59308 4.78290 4.87696 5.05853 5.30673 5.32551 5.59095 5.62712 5.70174 5.81011 5.86716 5.97871 6.17928 6.50379 6.78698 7.06060 7.25623 7.38150 8.79986 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.024174 B = 0.009841 C = 0.007913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.971615 B = 2844.634330 C = 3537.698805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.025 3.975 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.550 4.550 8 H 0.067 0.933 9 C 0.271 3.729 10 H 0.024 0.976 11 N -0.717 5.717 12 C 0.191 3.809 13 C -0.221 4.221 14 C -0.060 4.060 15 C -0.198 4.198 16 C -0.043 4.043 17 C -0.208 4.208 18 C -0.035 4.035 19 H 0.119 0.881 20 C 0.501 3.499 21 O -0.549 6.549 22 O -0.497 6.497 23 H 0.268 0.732 24 H 0.406 0.594 25 H 0.116 0.884 26 H 0.150 0.850 27 H 0.151 0.849 28 H 0.138 0.862 29 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 -10.538 -4.668 12.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.589 4.589 8 H 0.085 0.915 9 C 0.168 3.832 10 H 0.041 0.959 11 N -0.342 5.342 12 C 0.082 3.918 13 C -0.245 4.245 14 C -0.079 4.079 15 C -0.218 4.218 16 C -0.062 4.062 17 C -0.214 4.214 18 C -0.055 4.055 19 H 0.137 0.863 20 C 0.344 3.656 21 O -0.440 6.440 22 O -0.310 6.310 23 H 0.077 0.923 24 H 0.243 0.757 25 H 0.134 0.866 26 H 0.168 0.832 27 H 0.169 0.831 28 H 0.156 0.844 29 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 4.375 -9.981 -4.579 11.821 hybrid contribution -0.429 1.240 0.772 1.522 sum 3.946 -8.741 -3.807 10.318 Atomic orbital electron populations 1.69967 1.07389 1.28144 1.49902 1.25836 0.95778 1.02849 0.93111 0.85372 0.79130 0.78659 0.77663 1.18750 1.20409 1.20494 1.21803 0.93479 0.91263 1.52359 0.91504 1.18873 0.87949 0.91214 0.85205 0.95880 1.45731 1.38049 1.26843 1.23571 1.19104 0.92779 0.87663 0.92299 1.20530 1.05801 1.02028 0.96097 1.21084 0.94858 0.92736 0.99189 1.21050 1.00530 1.03345 0.96925 1.20607 0.98085 0.92642 0.94840 1.19594 1.02598 1.01444 0.97768 1.20436 1.03345 0.92713 0.88967 0.86303 1.23340 0.76125 0.80130 0.85970 1.90664 1.36366 1.74421 1.42552 1.84489 1.62414 1.32719 1.51411 0.92314 0.75710 0.86583 0.83224 0.83145 0.84418 0.71467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.74 12.24 21.45 0.26 -51.47 15 2 C 0.03 1.38 5.40 84.66 0.46 1.84 15 3 Si 0.97 42.77 29.54 68.60 2.03 44.80 15 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 15 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 7 C -0.55 -30.09 8.78 25.60 0.22 -29.86 15 8 H 0.07 3.53 7.37 -2.91 -0.02 3.51 15 9 C 0.27 14.11 3.13 44.49 0.14 14.25 15 10 H 0.02 1.41 6.45 -2.39 -0.02 1.39 15 11 N -0.72 -35.48 5.91 -320.93 -1.90 -37.38 15 12 C 0.19 8.19 7.03 38.34 0.27 8.46 15 13 C -0.22 -7.86 10.07 22.52 0.23 -7.63 15 14 C -0.06 -1.70 10.02 22.19 0.22 -1.48 15 15 C -0.20 -5.34 10.06 22.28 0.22 -5.12 15 16 C -0.04 -1.36 9.85 22.25 0.22 -1.14 15 17 C -0.21 -8.26 5.52 -19.63 -0.11 -8.37 15 18 C -0.04 -1.52 3.18 -11.87 -0.04 -1.56 15 19 H 0.12 4.93 7.43 -2.38 -0.02 4.91 15 20 C 0.50 19.88 7.66 71.24 0.55 20.42 15 21 O -0.55 -25.83 16.02 21.98 0.35 -25.48 15 22 O -0.50 -13.98 13.21 -51.38 -0.68 -14.66 15 23 H 0.27 14.27 8.31 -92.70 -0.77 13.50 15 24 H 0.41 20.79 8.05 -92.71 -0.75 20.04 15 25 H 0.12 3.85 8.06 -2.91 -0.02 3.82 15 26 H 0.15 3.07 8.06 -2.91 -0.02 3.05 15 27 H 0.15 2.92 8.06 -2.91 -0.02 2.90 15 28 H 0.14 3.65 8.06 -2.91 -0.02 3.62 15 29 H 0.42 7.54 9.10 -74.06 -0.67 6.87 15 Total: -1.00 -66.33 257.88 2.23 -64.10 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: -0.22 Total: 30.27 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 2.38 Total: -10.18 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -1.63 Total: -88.85 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -0.33 Total: -40.14 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -66.33 2.23 -64.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709947719.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.346 kcal (2) G-P(sol) polarization free energy of solvation -66.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds