Wall clock time and date at job start Mon Mar 30 2020 03:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29961 * 117.65671 * 2 1 4 4 C 1.35499 * 121.47569 * 179.97438 * 3 2 1 5 5 O 1.21684 * 121.51411 * 180.02562 * 4 3 2 6 6 C 1.46719 * 116.96780 * 0.02562 * 4 3 2 7 7 C 1.37310 * 137.51217 * 179.97438 * 6 4 3 8 8 N 1.36302 * 107.73050 * 180.02562 * 7 6 4 9 9 N 1.28671 * 112.03621 * 359.97438 * 8 7 6 10 10 C 1.46491 * 125.07137 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46957 * 245.02466 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.37349 * 109.85161 * 0.23126 * 9 8 7 20 20 N 1.30751 * 136.74969 * 180.45222 * 19 9 8 21 21 H 1.09009 * 109.47036 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47612 * 119.99588 * 1 2 3 23 23 H 1.09006 * 109.47238 * 240.00043 * 1 2 3 24 24 H 1.07997 * 126.13254 * 0.05041 * 7 6 4 25 25 H 1.09004 * 109.47166 * 125.02732 * 10 9 8 26 26 H 1.08994 * 109.47507 * 5.02438 * 10 9 8 27 27 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1102 1.1511 0.0000 4 6 3.4622 1.2414 0.0005 5 8 4.0278 2.3188 0.0010 6 6 4.2132 -0.0191 0.0005 7 6 5.5282 -0.4142 0.0005 8 7 5.5521 -1.7770 -0.0001 9 7 4.3681 -2.2806 0.0001 10 6 4.0627 -3.7134 -0.0010 11 6 3.3706 -4.0785 -1.2889 12 1 3.1779 -3.3193 -2.0325 13 6 2.9891 -5.3831 -1.5207 14 7 3.2241 -6.3076 -0.6154 15 14 2.1381 -5.8371 -3.1204 16 1 3.0294 -5.5156 -4.2638 17 1 1.8329 -7.2904 -3.1235 18 1 0.8750 -5.0662 -3.2454 19 6 3.4332 -1.2744 -0.0044 20 7 2.1287 -1.1864 0.0007 21 1 -0.3633 1.0278 0.0005 22 1 -0.3634 -0.5137 -0.8900 23 1 -0.3634 -0.5138 0.8900 24 1 6.3891 0.2379 0.0012 25 1 3.4105 -3.9465 0.8407 26 1 4.9882 -4.2822 0.0880 27 1 2.9553 -7.2253 -0.7783 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725618014.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:37 Heat of formation + Delta-G solvation = 205.370835 kcal Electronic energy + Delta-G solvation = -15622.197145 eV Core-core repulsion = 12887.931266 eV Total energy + Delta-G solvation = -2734.265879 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.84163 -39.99402 -39.26032 -37.59699 -35.24800 -33.20231 -31.79225 -31.02122 -28.41354 -27.40679 -24.14041 -22.83354 -22.02791 -21.51772 -19.70411 -18.82570 -18.05612 -17.74612 -16.86463 -16.36671 -15.96469 -15.70377 -15.36327 -15.15310 -14.77163 -14.53807 -14.15710 -14.07589 -13.90447 -13.13728 -13.03052 -12.71389 -12.33391 -11.97300 -11.93293 -11.60238 -10.36153 -10.28345 -10.09401 -9.18487 -7.65489 -4.06224 -0.45682 -0.28830 0.38587 0.59325 0.79357 0.87731 1.10220 1.41156 1.66012 1.78165 2.11116 2.52643 2.80346 2.98851 3.18800 3.38344 3.73113 3.75317 3.82668 4.22641 4.68323 4.76442 4.88437 4.93162 4.97385 5.17673 5.48582 5.68943 5.90438 6.77391 7.02674 7.76337 8.11239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.413 3.587 3 N -0.621 5.621 4 C 0.552 3.448 5 O -0.517 6.517 6 C -0.377 4.377 7 C 0.129 3.871 8 N -0.337 5.337 9 N -0.312 5.312 10 C 0.114 3.886 11 C 0.232 3.768 12 H 0.187 0.813 13 C -0.123 4.123 14 N -0.456 5.456 15 Si 0.971 3.029 16 H -0.219 1.219 17 H -0.227 1.227 18 H -0.216 1.216 19 C 0.313 3.687 20 N -0.620 5.620 21 H 0.086 0.914 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.189 0.811 25 H 0.198 0.802 26 H 0.189 0.811 27 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.661 -19.499 -4.860 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.140 3.860 3 N -0.362 5.362 4 C 0.342 3.658 5 O -0.395 6.395 6 C -0.396 4.396 7 C -0.040 4.040 8 N -0.171 5.171 9 N -0.104 5.104 10 C -0.007 4.007 11 C 0.188 3.812 12 H 0.204 0.796 13 C -0.348 4.348 14 N -0.087 5.087 15 Si 0.781 3.219 16 H -0.141 1.141 17 H -0.148 1.148 18 H -0.137 1.137 19 C 0.062 3.938 20 N -0.357 5.357 21 H 0.105 0.895 22 H 0.099 0.901 23 H 0.099 0.901 24 H 0.206 0.794 25 H 0.213 0.787 26 H 0.205 0.795 27 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.333 -19.593 -4.587 20.257 hybrid contribution 0.196 0.077 -0.009 0.211 sum -2.138 -19.516 -4.596 20.163 Atomic orbital electron populations 1.20627 0.86694 1.04153 1.03021 1.22676 0.96753 0.82103 0.84482 1.69252 1.11910 1.27458 1.27541 1.18372 0.84640 0.86453 0.76377 1.90649 1.70824 1.30770 1.47270 1.23338 0.95418 0.96895 1.23948 1.23808 0.96936 0.89411 0.93853 1.75267 1.00657 1.10887 1.30296 1.45286 1.03048 1.03486 1.58611 1.21873 1.03903 0.79793 0.95134 1.28829 0.68076 0.95026 0.89277 0.79617 1.28328 1.03010 0.94404 1.09053 1.69834 0.99334 1.08966 1.30580 0.85138 0.81498 0.83572 0.71737 1.14122 1.14820 1.13740 1.21239 0.90176 0.86541 0.95859 1.66947 1.06473 1.30002 1.32289 0.89525 0.90134 0.90088 0.79386 0.78698 0.79519 0.80290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.19 10.29 36.01 0.37 0.18 15 2 C 0.41 2.77 7.61 -156.86 -1.19 1.58 15 3 N -0.62 -6.93 10.24 -10.88 -0.11 -7.04 15 4 C 0.55 7.04 8.04 -12.51 -0.10 6.93 15 5 O -0.52 -8.31 18.00 5.20 0.09 -8.21 15 6 C -0.38 -3.23 6.67 -102.90 -0.69 -3.92 15 7 C 0.13 0.73 12.11 -15.90 -0.19 0.53 15 8 N -0.34 -0.91 12.07 31.08 0.38 -0.53 15 9 N -0.31 0.03 3.46 -59.81 -0.21 -0.18 15 10 C 0.11 -0.86 6.15 -5.20 -0.03 -0.89 15 11 C 0.23 -2.41 9.10 -34.44 -0.31 -2.72 15 12 H 0.19 -2.05 7.81 -52.49 -0.41 -2.46 15 13 C -0.12 1.44 5.46 -17.82 -0.10 1.35 15 14 N -0.46 5.22 13.29 55.43 0.74 5.95 15 15 Si 0.97 -10.48 29.54 -169.99 -5.02 -15.50 15 16 H -0.22 2.08 7.11 56.52 0.40 2.48 15 17 H -0.23 2.28 7.11 56.52 0.40 2.68 15 18 H -0.22 1.98 7.11 56.52 0.40 2.38 15 19 C 0.31 1.37 8.01 -154.43 -1.24 0.14 15 20 N -0.62 -2.70 10.27 -8.41 -0.09 -2.79 15 21 H 0.09 0.24 8.06 -51.92 -0.42 -0.18 15 22 H 0.08 -0.01 8.14 -51.93 -0.42 -0.43 15 23 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 15 24 H 0.19 0.73 8.06 -52.49 -0.42 0.31 15 25 H 0.20 -1.82 8.14 -51.93 -0.42 -2.24 15 26 H 0.19 -1.86 8.14 -51.93 -0.42 -2.28 15 27 H 0.38 -4.89 8.31 -40.82 -0.34 -5.23 15 LS Contribution 256.44 15.07 3.86 3.86 Total: 0.00 -20.68 256.44 -5.92 -26.59 By element: Atomic # 1 Polarization: -3.26 SS G_CDS: -2.08 Total: -5.34 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -3.48 Total: 3.18 kcal Atomic # 7 Polarization: -5.29 SS G_CDS: 0.71 Total: -4.58 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 14 Polarization: -10.48 SS G_CDS: -5.02 Total: -15.50 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -20.68 -5.92 -26.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725618014.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.964 kcal (2) G-P(sol) polarization free energy of solvation -20.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 211.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 205.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds