Wall clock time and date at job start Mon Mar 30 2020 03:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29961 * 117.65671 * 2 1 4 4 C 1.35499 * 121.47569 * 179.97438 * 3 2 1 5 5 O 1.21684 * 121.51411 * 180.02562 * 4 3 2 6 6 C 1.46719 * 116.96780 * 0.02562 * 4 3 2 7 7 C 1.37310 * 137.51217 * 179.97438 * 6 4 3 8 8 N 1.36302 * 107.73050 * 180.02562 * 7 6 4 9 9 N 1.28671 * 112.03621 * 359.97438 * 8 7 6 10 10 C 1.46491 * 125.07137 * 179.97438 * 9 8 7 11 11 C 1.50702 * 109.46957 * 245.02466 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48504 * 109.47196 * 60.00645 * 15 13 11 17 17 H 1.48504 * 109.46887 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47679 * 300.00280 * 15 13 11 19 19 C 1.37349 * 109.85161 * 0.23126 * 9 8 7 20 20 N 1.30751 * 136.74969 * 180.45222 * 19 9 8 21 21 H 1.09009 * 109.47036 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47612 * 119.99588 * 1 2 3 23 23 H 1.09006 * 109.47238 * 240.00043 * 1 2 3 24 24 H 1.07997 * 126.13254 * 0.05041 * 7 6 4 25 25 H 1.09004 * 109.47166 * 125.02732 * 10 9 8 26 26 H 1.08994 * 109.47507 * 5.02438 * 10 9 8 27 27 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1102 1.1511 0.0000 4 6 3.4622 1.2414 0.0005 5 8 4.0278 2.3188 0.0010 6 6 4.2132 -0.0191 0.0005 7 6 5.5282 -0.4142 0.0005 8 7 5.5521 -1.7770 -0.0001 9 7 4.3681 -2.2806 0.0001 10 6 4.0627 -3.7134 -0.0010 11 6 3.3706 -4.0785 -1.2889 12 1 3.1779 -3.3193 -2.0325 13 6 2.9891 -5.3831 -1.5207 14 7 3.2241 -6.3076 -0.6154 15 14 2.1381 -5.8371 -3.1204 16 1 3.0294 -5.5156 -4.2638 17 1 1.8329 -7.2904 -3.1235 18 1 0.8750 -5.0662 -3.2454 19 6 3.4332 -1.2744 -0.0044 20 7 2.1287 -1.1864 0.0007 21 1 -0.3633 1.0278 0.0005 22 1 -0.3634 -0.5137 -0.8900 23 1 -0.3634 -0.5138 0.8900 24 1 6.3891 0.2379 0.0012 25 1 3.4105 -3.9465 0.8407 26 1 4.9882 -4.2822 0.0880 27 1 2.9553 -7.2253 -0.7783 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725618014.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:37 Heat of formation + Delta-G solvation = 184.781122 kcal Electronic energy + Delta-G solvation = -15623.089982 eV Core-core repulsion = 12887.931266 eV Total energy + Delta-G solvation = -2735.158716 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.80262 -40.12762 -39.10207 -37.94982 -35.07810 -33.31353 -31.81317 -31.10894 -28.41512 -27.20759 -24.36108 -22.93030 -21.79322 -21.46194 -19.63735 -18.57483 -18.18539 -17.57921 -16.95860 -16.35048 -15.77948 -15.68290 -15.17246 -14.76650 -14.68748 -14.49349 -14.27539 -14.21863 -13.76440 -13.12539 -12.45861 -12.39156 -12.15645 -12.04187 -11.87528 -11.53815 -10.68695 -10.60358 -10.19090 -9.47216 -8.11889 -3.34158 0.01668 0.12951 0.34906 0.96545 1.08830 1.39155 1.65507 1.66959 1.91699 2.00939 2.14751 2.77663 3.10409 3.35491 3.37437 3.41888 3.56183 3.78802 3.89473 4.14226 4.59968 4.84989 4.91827 4.91955 5.06079 5.22881 5.38533 5.56436 5.90095 6.65271 6.97315 7.39882 7.90008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.394 3.606 3 N -0.690 5.690 4 C 0.518 3.482 5 O -0.626 6.626 6 C -0.437 4.437 7 C 0.092 3.908 8 N -0.330 5.330 9 N -0.326 5.326 10 C 0.085 3.915 11 C 0.380 3.620 12 H 0.216 0.784 13 C -0.142 4.142 14 N -0.374 5.374 15 Si 1.013 2.987 16 H -0.233 1.233 17 H -0.224 1.224 18 H -0.235 1.235 19 C 0.314 3.686 20 N -0.627 5.627 21 H 0.068 0.932 22 H 0.106 0.894 23 H 0.096 0.904 24 H 0.177 0.823 25 H 0.219 0.781 26 H 0.236 0.764 27 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.618 -28.898 -6.297 29.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.122 3.878 3 N -0.439 5.439 4 C 0.312 3.688 5 O -0.512 6.512 6 C -0.456 4.456 7 C -0.088 4.088 8 N -0.159 5.159 9 N -0.121 5.121 10 C -0.032 4.032 11 C 0.350 3.650 12 H 0.233 0.767 13 C -0.365 4.365 14 N -0.005 5.005 15 Si 0.823 3.177 16 H -0.155 1.155 17 H -0.145 1.145 18 H -0.158 1.158 19 C 0.065 3.935 20 N -0.370 5.370 21 H 0.087 0.913 22 H 0.124 0.876 23 H 0.115 0.885 24 H 0.194 0.806 25 H 0.234 0.766 26 H 0.252 0.748 27 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -3.303 -29.584 -6.121 30.391 hybrid contribution 0.464 1.127 0.029 1.219 sum -2.839 -28.458 -6.091 29.240 Atomic orbital electron populations 1.20628 0.84323 1.03622 1.04816 1.23298 0.98212 0.82191 0.84135 1.69072 1.11760 1.30227 1.32844 1.18929 0.85901 0.87276 0.76705 1.90504 1.72129 1.33378 1.55197 1.23104 0.97155 0.97293 1.28029 1.23530 0.95968 0.90744 0.98535 1.74933 1.01794 1.09089 1.30076 1.45189 1.00926 1.04393 1.61606 1.22803 1.06394 0.77170 0.96796 1.30219 0.47699 0.96695 0.90425 0.76745 1.28493 1.05089 0.93376 1.09525 1.69861 0.92266 1.10578 1.27831 0.84511 0.79904 0.83304 0.69972 1.15530 1.14507 1.15768 1.21082 0.89981 0.86431 0.96014 1.66988 1.05473 1.27880 1.36614 0.91308 0.87606 0.88503 0.80557 0.76608 0.74832 0.77146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.29 71.24 0.73 0.20 15 2 C 0.39 7.13 7.61 138.63 1.06 8.19 15 3 N -0.69 -21.09 10.24 -306.14 -3.13 -24.23 15 4 C 0.52 18.40 8.04 86.34 0.69 19.10 15 5 O -0.63 -27.74 18.00 -4.30 -0.08 -27.82 15 6 C -0.44 -10.59 6.67 -18.75 -0.13 -10.71 15 7 C 0.09 1.60 12.11 83.78 1.01 2.61 15 8 N -0.33 -2.18 12.07 -55.58 -0.67 -2.85 15 9 N -0.33 0.46 3.46 -343.14 -1.19 -0.73 15 10 C 0.09 -1.84 6.15 85.64 0.53 -1.32 15 11 C 0.38 -11.05 9.10 25.60 0.23 -10.82 15 12 H 0.22 -6.49 7.81 -2.91 -0.02 -6.51 15 13 C -0.14 4.69 5.46 84.66 0.46 5.15 15 14 N -0.37 12.50 13.29 21.45 0.28 12.78 15 15 Si 1.01 -29.15 29.54 68.60 2.03 -27.12 15 16 H -0.23 5.84 7.11 99.48 0.71 6.55 15 17 H -0.22 6.18 7.11 99.48 0.71 6.88 15 18 H -0.24 5.64 7.11 99.48 0.71 6.34 15 19 C 0.31 3.45 8.01 136.42 1.09 4.54 15 20 N -0.63 -6.60 10.27 -180.51 -1.85 -8.46 15 21 H 0.07 0.69 8.06 -2.38 -0.02 0.67 15 22 H 0.11 0.04 8.14 -2.39 -0.02 0.02 15 23 H 0.10 0.26 8.14 -2.38 -0.02 0.24 15 24 H 0.18 2.84 8.06 -2.91 -0.02 2.82 15 25 H 0.22 -5.65 8.14 -2.38 -0.02 -5.67 15 26 H 0.24 -6.71 8.14 -2.39 -0.02 -6.73 15 27 H 0.40 -14.85 8.31 -92.70 -0.77 -15.62 15 Total: 0.00 -74.77 256.44 2.28 -72.49 By element: Atomic # 1 Polarization: -12.22 SS G_CDS: 1.21 Total: -11.01 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 5.69 Total: 16.94 kcal Atomic # 7 Polarization: -16.92 SS G_CDS: -6.56 Total: -23.49 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.08 Total: -27.82 kcal Atomic # 14 Polarization: -29.15 SS G_CDS: 2.03 Total: -27.12 kcal Total: -74.77 2.28 -72.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725618014.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 257.276 kcal (2) G-P(sol) polarization free energy of solvation -74.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds