Wall clock time and date at job start Mon Mar 30 2020 03:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38400 * 119.43164 * 2 1 4 4 C 1.38279 * 119.34327 * 179.74363 * 3 2 1 5 5 C 1.40313 * 118.25676 * 0.49685 * 4 3 2 6 6 C 1.47140 * 120.58563 * 179.75518 * 5 4 3 7 7 C 1.35008 * 119.99845 * 316.29959 * 6 5 4 8 8 C 1.46129 * 120.00329 * 349.08866 * 7 6 5 9 9 O 1.21677 * 119.99857 * 353.22916 * 8 7 6 10 10 O 1.34892 * 120.00235 * 172.94848 * 8 7 6 11 11 C 1.34800 * 117.00227 * 180.27727 * 10 8 7 12 12 H 1.08003 * 120.00004 * 0.02562 * 11 10 8 13 13 C 1.38852 * 120.00393 * 180.02562 * 11 10 8 14 14 N 1.31396 * 119.99555 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00344 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47169 * 60.00253 * 15 13 11 17 17 H 1.48501 * 109.47150 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47112 * 300.00028 * 15 13 11 19 19 C 1.39837 * 118.82429 * 359.48554 * 5 4 3 20 20 N 1.31651 * 120.52156 * 0.27328 * 19 5 4 21 21 H 1.08997 * 109.46954 * 270.02249 * 1 2 3 22 22 H 1.09003 * 109.46848 * 30.02158 * 1 2 3 23 23 H 1.09001 * 109.47041 * 150.01909 * 1 2 3 24 24 H 1.08007 * 120.32966 * 0.02562 * 3 2 1 25 25 H 1.07992 * 120.87360 * 180.27440 * 4 3 2 26 26 H 1.08003 * 119.99823 * 136.29287 * 6 5 4 27 27 H 1.07999 * 119.99599 * 169.10095 * 7 6 5 28 28 H 0.97000 * 119.99655 * 179.97438 * 14 13 11 29 29 H 1.07998 * 119.73990 * 180.29384 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.2054 0.0000 4 6 3.5699 1.2033 0.0054 5 6 4.2323 -0.0337 0.0000 6 6 5.7023 -0.0957 -0.0001 7 6 6.4125 0.7240 -0.8041 8 6 5.7337 1.4991 -1.8404 9 8 4.5513 1.3154 -2.0612 10 8 6.4166 2.4222 -2.5484 11 6 5.7297 3.1061 -3.4852 12 1 4.6802 2.9038 -3.6405 13 6 6.3715 4.0706 -4.2506 14 7 7.6484 4.3164 -4.0621 15 14 5.4195 5.0189 -5.5483 16 1 4.3039 5.7567 -4.9033 17 1 6.3266 5.9824 -6.2222 18 1 4.8716 4.0710 -6.5515 19 6 3.4705 -1.2064 0.0004 20 7 2.1553 -1.1493 0.0004 21 1 -0.3633 0.0004 1.0276 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6432 2.1385 0.0004 25 1 4.1254 2.1293 0.0100 26 1 6.2133 -0.7969 0.6432 27 1 7.4823 0.8067 -0.6816 28 1 8.0968 4.9899 -4.5970 29 1 3.9651 -2.1664 0.0011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754994390.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:13 Heat of formation + Delta-G solvation = -23.140888 kcal Electronic energy + Delta-G solvation = -15530.314464 eV Core-core repulsion = 12805.616994 eV Total energy + Delta-G solvation = -2724.697470 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.92483 -38.81669 -35.76447 -33.74993 -32.27797 -31.90346 -30.99269 -27.39778 -25.59181 -23.22067 -23.00208 -21.33808 -18.79000 -17.84898 -17.03332 -16.14696 -15.70124 -15.02629 -14.52474 -14.36612 -14.12664 -13.90573 -13.42149 -12.85320 -12.67245 -12.27389 -12.07311 -11.96896 -11.67481 -11.30106 -11.21493 -10.53655 -10.51458 -10.02578 -9.90731 -9.30947 -8.92805 -8.78819 -8.61674 -7.81361 -6.54014 -4.14409 1.00333 1.76411 2.22020 3.12211 3.12966 3.16804 3.89814 4.00754 4.22392 4.61739 4.64219 5.07237 5.09497 5.12436 5.32672 5.45366 5.63781 5.71298 5.80050 5.90787 6.05750 6.13961 6.29553 6.46136 6.64598 6.67505 7.03316 7.14799 7.30569 7.84982 8.37768 8.67292 8.94475 9.78287 10.63225 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.031595 B = 0.006807 C = 0.005812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.009192 B = 4112.671551 C = 4816.317740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.121 3.879 3 C -0.183 4.183 4 C 0.013 3.987 5 C -0.109 4.109 6 C -0.069 4.069 7 C -0.141 4.141 8 C 0.406 3.594 9 O -0.547 6.547 10 O -0.204 6.204 11 C -0.371 4.371 12 H 0.097 0.903 13 C 0.041 3.959 14 N -0.856 5.856 15 Si 0.946 3.054 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.269 1.269 19 C 0.108 3.892 20 N -0.500 5.500 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.127 0.873 25 H 0.125 0.875 26 H 0.136 0.864 27 H 0.135 0.865 28 H 0.273 0.727 29 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.339 -5.444 8.073 11.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.017 4.017 3 C -0.203 4.203 4 C -0.013 4.013 5 C -0.112 4.112 6 C -0.089 4.089 7 C -0.160 4.160 8 C 0.256 3.744 9 O -0.446 6.446 10 O -0.111 6.111 11 C -0.447 4.447 12 H 0.115 0.885 13 C -0.165 4.165 14 N -0.491 5.491 15 Si 0.770 3.230 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.194 1.194 19 C -0.048 4.048 20 N -0.210 5.210 21 H 0.090 0.910 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.145 0.855 25 H 0.143 0.857 26 H 0.154 0.846 27 H 0.153 0.847 28 H 0.083 0.917 29 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.914 -6.078 7.894 12.127 hybrid contribution 0.375 1.323 -0.829 1.606 sum -6.539 -4.754 7.066 10.737 Atomic orbital electron populations 1.20650 0.89570 1.03067 1.02363 1.21161 0.96492 0.88549 0.95451 1.21681 0.94821 0.98766 1.04985 1.21536 0.93892 0.97279 0.88582 1.19808 0.94036 0.94408 1.02907 1.22043 0.91694 0.97299 0.97853 1.22470 1.00592 0.97489 0.95428 1.20980 0.86162 0.82428 0.84809 1.90722 1.16632 1.68319 1.68964 1.83956 1.41752 1.42435 1.42915 1.21270 0.95338 1.16124 1.11967 0.88514 1.25424 0.96011 0.96803 0.98226 1.69964 1.09164 1.31263 1.38751 0.85707 0.78783 0.78947 0.79594 1.19345 1.20235 1.19351 1.22693 0.89093 0.97116 0.95927 1.67322 1.09935 1.29057 1.14654 0.90981 0.91044 0.90908 0.85506 0.85665 0.84596 0.84731 0.91743 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.16 36.01 0.37 -0.84 15 2 C 0.12 1.98 6.78 -82.48 -0.56 1.42 15 3 C -0.18 -3.09 9.72 -39.51 -0.38 -3.47 15 4 C 0.01 0.24 6.73 -38.79 -0.26 -0.02 15 5 C -0.11 -1.92 4.55 -104.91 -0.48 -2.40 15 6 C -0.07 -1.08 9.84 -37.12 -0.37 -1.45 15 7 C -0.14 -2.60 10.06 -37.57 -0.38 -2.98 15 8 C 0.41 9.92 6.90 33.90 0.23 10.16 15 9 O -0.55 -14.12 11.38 -19.40 -0.22 -14.34 15 10 O -0.20 -5.79 9.75 -21.92 -0.21 -6.01 15 11 C -0.37 -10.80 9.65 30.96 0.30 -10.50 15 12 H 0.10 2.83 6.86 -52.48 -0.36 2.47 15 13 C 0.04 1.13 5.50 -17.51 -0.10 1.03 15 14 N -0.86 -24.63 13.67 55.49 0.76 -23.87 15 15 Si 0.95 20.95 29.55 -169.99 -5.02 15.92 15 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 17 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 18 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 19 C 0.11 1.79 10.97 -17.03 -0.19 1.61 15 20 N -0.50 -8.67 10.25 -9.05 -0.09 -8.76 15 21 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.07 0.77 8.07 -51.93 -0.42 0.35 15 23 H 0.07 0.87 8.14 -51.93 -0.42 0.44 15 24 H 0.13 1.85 8.06 -52.48 -0.42 1.43 15 25 H 0.13 2.43 7.10 -52.49 -0.37 2.05 15 26 H 0.14 1.53 8.06 -52.48 -0.42 1.11 15 27 H 0.13 2.16 8.06 -52.49 -0.42 1.74 15 28 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 29 H 0.15 2.00 8.06 -52.49 -0.42 1.58 15 LS Contribution 265.64 15.07 4.00 4.00 Total: -1.00 -33.08 265.64 -5.42 -38.50 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -2.82 Total: 2.00 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -1.81 Total: -7.45 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.67 Total: -32.63 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.43 Total: -20.35 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -33.08 -5.42 -38.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754994390.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.358 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds