Wall clock time and date at job start Mon Mar 30 2020 03:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31387 * 1 3 3 Si 1.86801 * 119.99816 * 2 1 4 4 H 1.48506 * 109.47252 * 240.00072 * 3 2 1 5 5 H 1.48500 * 109.47135 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47079 * 120.00145 * 3 2 1 7 7 C 1.38852 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00531 * 179.97438 * 7 2 1 9 9 O 1.34825 * 119.99681 * 359.97438 * 7 2 1 10 10 C 1.34695 * 116.99699 * 180.02562 * 9 7 2 11 11 O 1.21470 * 120.00059 * 0.02562 * 10 9 7 12 12 C 1.47974 * 119.99620 * 179.97438 * 10 9 7 13 13 C 1.39411 * 119.72789 * 180.02562 * 12 10 9 14 14 C 1.38559 * 119.04920 * 180.02562 * 13 12 10 15 15 C 1.38645 * 118.49925 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.31730 * 180.02562 * 15 14 13 17 17 C 1.53000 * 117.50175 * 188.62245 * 16 15 14 18 18 C 1.52997 * 60.00347 * 252.51187 * 17 16 15 19 19 C 1.38578 * 119.36804 * 0.27300 * 15 14 13 20 20 N 1.31510 * 120.90749 * 359.43380 * 19 15 14 21 21 H 0.96996 * 120.00399 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.47643 * 0.02562 * 13 12 10 23 23 H 1.08005 * 120.75218 * 179.97438 * 14 13 12 24 24 H 1.09004 * 115.56587 * 334.31050 * 16 15 14 25 25 H 1.09002 * 117.49696 * 0.02562 * 17 16 15 26 26 H 1.09002 * 117.50343 * 145.02291 * 17 16 15 27 27 H 1.08999 * 117.49685 * 252.51237 * 18 17 16 28 28 H 1.08997 * 117.50044 * 107.48590 * 18 17 16 29 29 H 1.08000 * 119.54292 * 179.69994 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.1016 1.6965 -1.2125 5 1 1.2828 2.7465 -0.0006 6 1 3.1016 1.6964 1.2124 7 6 2.0082 -1.2025 -0.0005 8 1 3.0882 -1.2025 -0.0010 9 8 1.3341 -2.3701 -0.0005 10 6 2.0677 -3.4997 -0.0005 11 8 3.2808 -3.4361 -0.0001 12 6 1.3959 -4.8181 0.0000 13 6 2.1608 -5.9837 0.0006 14 6 1.5171 -7.2108 0.0006 15 6 0.1308 -7.2306 -0.0005 16 6 -0.6112 -8.5422 0.0000 17 6 -2.1268 -8.4967 -0.2047 18 6 -1.5507 -8.8220 1.1748 19 6 -0.5660 -6.0328 -0.0073 20 7 0.0696 -4.8815 -0.0016 21 1 -0.4850 0.8400 -0.0004 22 1 3.2395 -5.9311 0.0010 23 1 2.0825 -8.1310 0.0006 24 1 -0.0712 -9.3883 -0.4251 25 1 -2.5871 -7.5180 -0.3402 26 1 -2.5838 -9.3127 -0.7644 27 1 -1.6286 -9.8520 1.5226 28 1 -1.6320 -8.0573 1.9473 29 1 -1.6459 -6.0449 -0.0131 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756640267.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:24 Heat of formation + Delta-G solvation = -16.191713 kcal Electronic energy + Delta-G solvation = -15226.137878 eV Core-core repulsion = 12501.741746 eV Total energy + Delta-G solvation = -2724.396132 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.25663 -38.68915 -37.05620 -35.14309 -32.39419 -32.06799 -30.70153 -26.02786 -24.46981 -23.63583 -22.41148 -21.31273 -20.18167 -17.78299 -17.38167 -16.81820 -15.46362 -15.25429 -14.74025 -14.62797 -14.37173 -14.29267 -13.34052 -13.21613 -12.74642 -12.32389 -11.78677 -11.67054 -11.50702 -11.28553 -11.02266 -10.54965 -10.47659 -10.41163 -9.86605 -9.53679 -9.39981 -8.91907 -8.63685 -8.55538 -6.46502 -4.07943 0.95522 1.53260 3.10323 3.16926 3.21549 3.34215 3.78946 3.85953 4.29359 4.37960 4.46364 4.69468 4.80199 4.83203 5.00237 5.05134 5.14783 5.43384 5.47039 5.51446 5.69966 5.85534 5.92168 6.02792 6.09908 6.35596 6.66968 6.97745 7.33845 7.88541 8.22663 8.68205 8.99504 9.84471 10.69759 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.049382 B = 0.005419 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.872929 B = 5165.356846 C = 5652.197901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.043 3.957 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.376 4.376 8 H 0.099 0.901 9 O -0.178 6.178 10 C 0.432 3.568 11 O -0.554 6.554 12 C 0.126 3.874 13 C -0.121 4.121 14 C -0.080 4.080 15 C -0.106 4.106 16 C -0.112 4.112 17 C -0.177 4.177 18 C -0.170 4.170 19 C 0.094 3.906 20 N -0.432 5.432 21 H 0.273 0.727 22 H 0.147 0.853 23 H 0.137 0.863 24 H 0.114 0.886 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 -15.224 0.353 15.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.164 4.164 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.452 4.452 8 H 0.117 0.883 9 O -0.082 6.082 10 C 0.279 3.721 11 O -0.453 6.453 12 C -0.010 4.010 13 C -0.141 4.141 14 C -0.105 4.105 15 C -0.108 4.108 16 C -0.131 4.131 17 C -0.213 4.213 18 C -0.207 4.207 19 C -0.066 4.066 20 N -0.142 5.142 21 H 0.083 0.917 22 H 0.165 0.835 23 H 0.155 0.845 24 H 0.132 0.868 25 H 0.120 0.880 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.250 -14.189 0.357 14.560 hybrid contribution 0.848 -0.074 -0.017 0.852 sum -2.402 -14.263 0.340 14.468 Atomic orbital electron populations 1.70004 1.06167 1.28145 1.43689 1.25465 0.95844 0.99102 0.95987 0.85685 0.78668 0.78991 0.79508 1.19282 1.20221 1.19279 1.21396 0.92647 0.80007 1.51177 0.88349 1.83998 1.38729 1.12878 1.72622 1.20291 0.85333 0.84846 0.81581 1.90628 1.14491 1.87317 1.52870 1.20553 0.89306 0.92510 0.98655 1.22043 1.02100 0.91403 0.98594 1.21257 0.93464 0.97852 0.97965 1.20281 0.94213 0.94838 1.01472 1.20907 0.91935 0.95905 1.04348 1.23089 0.94793 1.03701 0.99751 1.23054 1.02958 1.02814 0.91826 1.22748 1.00443 0.86691 0.96692 1.67905 1.09372 1.28483 1.08481 0.91704 0.83546 0.84534 0.86794 0.88018 0.88300 0.88403 0.88374 0.82727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.20 13.67 55.49 0.76 -24.44 15 2 C 0.04 1.22 5.50 -17.51 -0.10 1.12 15 3 Si 0.95 21.35 29.55 -169.99 -5.02 16.33 15 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 7 C -0.38 -11.44 9.65 30.96 0.30 -11.14 15 8 H 0.10 2.95 6.86 -52.49 -0.36 2.59 15 9 O -0.18 -5.46 9.56 -21.46 -0.21 -5.67 15 10 C 0.43 11.75 7.89 34.72 0.27 12.02 15 11 O -0.55 -15.57 15.57 -19.24 -0.30 -15.87 15 12 C 0.13 2.82 6.75 -83.03 -0.56 2.26 15 13 C -0.12 -2.15 9.63 -39.03 -0.38 -2.52 15 14 C -0.08 -1.11 9.88 -39.31 -0.39 -1.50 15 15 C -0.11 -1.45 5.63 -104.35 -0.59 -2.04 15 16 C -0.11 -1.12 6.06 -91.77 -0.56 -1.68 15 17 C -0.18 -1.55 9.87 -26.73 -0.26 -1.81 15 18 C -0.17 -1.49 10.17 -26.73 -0.27 -1.77 15 19 C 0.09 1.55 10.47 -17.56 -0.18 1.37 15 20 N -0.43 -9.34 10.12 -9.81 -0.10 -9.44 15 21 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 22 H 0.15 2.46 7.64 -52.49 -0.40 2.06 15 23 H 0.14 1.39 8.06 -52.48 -0.42 0.97 15 24 H 0.11 0.96 8.14 -51.93 -0.42 0.53 15 25 H 0.10 0.92 6.19 -51.93 -0.32 0.60 15 26 H 0.10 0.70 8.14 -51.93 -0.42 0.28 15 27 H 0.10 0.69 8.14 -51.93 -0.42 0.27 15 28 H 0.10 0.95 8.14 -51.93 -0.42 0.52 15 29 H 0.16 2.12 6.03 -52.49 -0.32 1.80 15 LS Contribution 266.92 15.07 4.02 4.02 Total: -1.00 -34.38 266.92 -6.20 -40.58 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -2.65 Total: 0.17 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.71 Total: -5.69 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.66 Total: -33.88 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.50 Total: -21.53 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -34.38 -6.20 -40.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756640267.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.390 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds