Wall clock time and date at job start Mon Mar 30 2020 03:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31387 * 1 3 3 Si 1.86801 * 119.99816 * 2 1 4 4 H 1.48506 * 109.47252 * 240.00072 * 3 2 1 5 5 H 1.48500 * 109.47135 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47079 * 120.00145 * 3 2 1 7 7 C 1.38852 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00531 * 179.97438 * 7 2 1 9 9 O 1.34825 * 119.99681 * 359.97438 * 7 2 1 10 10 C 1.34695 * 116.99699 * 180.02562 * 9 7 2 11 11 O 1.21470 * 120.00059 * 0.02562 * 10 9 7 12 12 C 1.47974 * 119.99620 * 179.97438 * 10 9 7 13 13 C 1.39411 * 119.72789 * 180.02562 * 12 10 9 14 14 C 1.38559 * 119.04920 * 180.02562 * 13 12 10 15 15 C 1.38645 * 118.49925 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.31730 * 180.02562 * 15 14 13 17 17 C 1.53000 * 117.50175 * 188.62245 * 16 15 14 18 18 C 1.52997 * 60.00347 * 252.51187 * 17 16 15 19 19 C 1.38578 * 119.36804 * 0.27300 * 15 14 13 20 20 N 1.31510 * 120.90749 * 359.43380 * 19 15 14 21 21 H 0.96996 * 120.00399 * 0.02562 * 1 2 3 22 22 H 1.08000 * 120.47643 * 0.02562 * 13 12 10 23 23 H 1.08005 * 120.75218 * 179.97438 * 14 13 12 24 24 H 1.09004 * 115.56587 * 334.31050 * 16 15 14 25 25 H 1.09002 * 117.49696 * 0.02562 * 17 16 15 26 26 H 1.09002 * 117.50343 * 145.02291 * 17 16 15 27 27 H 1.08999 * 117.49685 * 252.51237 * 18 17 16 28 28 H 1.08997 * 117.50044 * 107.48590 * 18 17 16 29 29 H 1.08000 * 119.54292 * 179.69994 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.1016 1.6965 -1.2125 5 1 1.2828 2.7465 -0.0006 6 1 3.1016 1.6964 1.2124 7 6 2.0082 -1.2025 -0.0005 8 1 3.0882 -1.2025 -0.0010 9 8 1.3341 -2.3701 -0.0005 10 6 2.0677 -3.4997 -0.0005 11 8 3.2808 -3.4361 -0.0001 12 6 1.3959 -4.8181 0.0000 13 6 2.1608 -5.9837 0.0006 14 6 1.5171 -7.2108 0.0006 15 6 0.1308 -7.2306 -0.0005 16 6 -0.6112 -8.5422 0.0000 17 6 -2.1268 -8.4967 -0.2047 18 6 -1.5507 -8.8220 1.1748 19 6 -0.5660 -6.0328 -0.0073 20 7 0.0696 -4.8815 -0.0016 21 1 -0.4850 0.8400 -0.0004 22 1 3.2395 -5.9311 0.0010 23 1 2.0825 -8.1310 0.0006 24 1 -0.0712 -9.3883 -0.4251 25 1 -2.5871 -7.5180 -0.3402 26 1 -2.5838 -9.3127 -0.7644 27 1 -1.6286 -9.8520 1.5226 28 1 -1.6320 -8.0573 1.9473 29 1 -1.6459 -6.0449 -0.0131 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756640267.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:24 Heat of formation + Delta-G solvation = -39.176237 kcal Electronic energy + Delta-G solvation = -15227.134561 eV Core-core repulsion = 12501.741746 eV Total energy + Delta-G solvation = -2725.392815 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.74970 -40.61831 -38.06377 -37.28189 -34.41834 -33.55914 -32.11349 -27.99605 -26.08697 -24.94957 -23.11850 -22.82504 -21.51111 -19.96509 -19.24567 -18.08315 -17.09279 -16.76331 -16.63499 -16.17694 -15.81626 -15.65359 -14.88846 -14.69826 -14.21923 -13.74730 -13.53767 -13.22071 -12.72747 -12.44249 -12.30443 -12.18584 -12.08786 -11.99613 -11.43592 -11.26082 -10.83739 -10.75973 -10.46808 -9.85457 -8.60193 -6.38982 -0.49638 0.23608 1.31316 1.32965 1.49389 1.63598 2.04426 2.52618 2.63866 2.96467 3.12573 3.31362 3.56559 3.82642 3.86825 4.01670 4.14305 4.21118 4.32179 4.50039 4.69643 4.87656 4.99737 5.03193 5.07836 5.14672 5.29919 5.30105 5.57597 5.73204 6.43585 6.80398 6.86387 7.68652 8.59938 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.049382 B = 0.005419 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.872929 B = 5165.356846 C = 5652.197901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C -0.004 4.004 3 Si 1.026 2.974 4 H -0.258 1.258 5 H -0.257 1.257 6 H -0.258 1.258 7 C -0.428 4.428 8 H 0.088 0.912 9 O -0.216 6.216 10 C 0.433 3.567 11 O -0.573 6.573 12 C 0.075 3.925 13 C -0.110 4.110 14 C -0.067 4.067 15 C -0.074 4.074 16 C -0.124 4.124 17 C -0.174 4.174 18 C -0.161 4.161 19 C 0.082 3.918 20 N -0.476 5.476 21 H 0.282 0.718 22 H 0.152 0.848 23 H 0.190 0.810 24 H 0.144 0.856 25 H 0.093 0.907 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.085 0.915 29 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.163 -18.014 0.332 18.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.206 4.206 3 Si 0.843 3.157 4 H -0.182 1.182 5 H -0.180 1.180 6 H -0.182 1.182 7 C -0.503 4.503 8 H 0.106 0.894 9 O -0.122 6.122 10 C 0.282 3.718 11 O -0.472 6.472 12 C -0.060 4.060 13 C -0.130 4.130 14 C -0.092 4.092 15 C -0.076 4.076 16 C -0.142 4.142 17 C -0.210 4.210 18 C -0.198 4.198 19 C -0.079 4.079 20 N -0.187 5.187 21 H 0.092 0.908 22 H 0.170 0.830 23 H 0.207 0.793 24 H 0.162 0.838 25 H 0.111 0.889 26 H 0.140 0.860 27 H 0.141 0.859 28 H 0.104 0.896 29 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -3.510 -17.006 0.337 17.368 hybrid contribution 0.826 0.399 0.000 0.917 sum -2.684 -16.607 0.337 16.826 Atomic orbital electron populations 1.70100 1.08024 1.29843 1.44897 1.26783 0.96940 1.02695 0.94159 0.84591 0.77578 0.73457 0.80057 1.18241 1.18023 1.18233 1.21660 0.92578 0.81146 1.54958 0.89448 1.84029 1.39776 1.13881 1.74526 1.21405 0.85552 0.86041 0.78823 1.90561 1.15466 1.88086 1.53129 1.20157 0.90332 0.91087 1.04391 1.22202 1.02236 0.91344 0.97265 1.21790 0.93757 0.97921 0.95710 1.20760 0.94526 0.95711 0.96613 1.21077 0.92630 0.94340 1.06175 1.23217 0.93552 1.04233 1.00012 1.23139 1.01388 1.03930 0.91311 1.23222 1.01570 0.86450 0.96650 1.67675 1.09496 1.31676 1.09848 0.90832 0.83031 0.79326 0.83781 0.88865 0.85985 0.85882 0.89633 0.80588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.54 13.67 21.64 0.30 -55.25 15 2 C 0.00 -0.25 5.50 84.91 0.47 0.22 15 3 Si 1.03 44.76 29.55 68.60 2.03 46.79 15 4 H -0.26 -10.75 7.11 99.48 0.71 -10.05 15 5 H -0.26 -10.21 7.11 99.48 0.71 -9.50 15 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 15 7 C -0.43 -27.70 9.65 67.97 0.66 -27.04 15 8 H 0.09 5.61 6.86 -2.91 -0.02 5.59 15 9 O -0.22 -14.24 9.56 12.01 0.11 -14.12 15 10 C 0.43 25.08 7.89 70.40 0.56 25.63 15 11 O -0.57 -34.01 15.57 19.93 0.31 -33.70 15 12 C 0.07 3.48 6.75 41.86 0.28 3.76 15 13 C -0.11 -3.81 9.63 22.63 0.22 -3.60 15 14 C -0.07 -1.61 9.88 22.44 0.22 -1.39 15 15 C -0.07 -1.78 5.63 -19.69 -0.11 -1.89 15 16 C -0.12 -1.86 6.06 -11.54 -0.07 -1.93 15 17 C -0.17 -2.30 9.87 30.59 0.30 -2.00 15 18 C -0.16 -2.11 10.17 30.60 0.31 -1.80 15 19 C 0.08 2.61 10.47 84.82 0.89 3.50 15 20 N -0.48 -21.26 10.12 -184.97 -1.87 -23.14 15 21 H 0.28 15.74 8.31 -92.71 -0.77 14.97 15 22 H 0.15 5.00 7.64 -2.91 -0.02 4.98 15 23 H 0.19 2.65 8.06 -2.91 -0.02 2.63 15 24 H 0.14 1.45 8.14 -2.38 -0.02 1.43 15 25 H 0.09 1.42 6.19 -2.39 -0.01 1.40 15 26 H 0.12 1.12 8.14 -2.39 -0.02 1.10 15 27 H 0.12 1.07 8.14 -2.39 -0.02 1.05 15 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 15 29 H 0.18 4.64 6.03 -2.91 -0.02 4.62 15 Total: -1.00 -82.18 266.92 5.77 -76.41 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 1.17 Total: 9.54 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 3.72 Total: -6.54 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -1.58 Total: -78.38 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: 0.43 Total: -47.82 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -82.18 5.77 -76.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756640267.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.236 kcal (2) G-P(sol) polarization free energy of solvation -82.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds