Wall clock time and date at job start Mon Mar 30 2020 03:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38457 * 120.48139 * 2 1 4 4 C 1.38709 * 118.52463 * 179.97438 * 3 2 1 5 5 C 1.38557 * 119.42145 * 359.97438 * 4 3 2 6 6 N 1.31533 * 120.93495 * 359.72815 * 5 4 3 7 7 C 1.32993 * 121.59524 * 0.56002 * 6 5 4 8 8 C 1.47310 * 119.75580 * 179.71130 * 7 6 5 9 9 C 1.34851 * 119.99991 * 44.04910 * 8 7 6 10 10 C 1.46352 * 120.00287 * 7.36426 * 9 8 7 11 11 O 1.21645 * 119.99629 * 5.33658 * 10 9 8 12 12 O 1.34856 * 120.00441 * 185.06128 * 10 9 8 13 13 C 1.34774 * 117.00495 * 180.28173 * 12 10 9 14 14 H 1.08000 * 119.99636 * 359.97438 * 13 12 10 15 15 C 1.38895 * 120.00560 * 180.02562 * 13 12 10 16 16 N 1.31364 * 119.99518 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00272 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47158 * 60.00095 * 17 15 13 19 19 H 1.48504 * 109.47215 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47454 * 299.99835 * 17 15 13 21 21 H 1.09006 * 109.46845 * 270.02315 * 1 2 3 22 22 H 1.08993 * 109.47058 * 30.02468 * 1 2 3 23 23 H 1.09000 * 109.47310 * 150.02693 * 1 2 3 24 24 H 1.07994 * 120.73676 * 359.97438 * 3 2 1 25 25 H 1.08002 * 120.28901 * 180.02562 * 4 3 2 26 26 H 1.07996 * 119.52560 * 179.97438 * 5 4 3 27 27 H 1.08000 * 119.99525 * 224.04540 * 8 7 6 28 28 H 1.07997 * 119.99666 * 187.36558 * 9 8 7 29 29 H 0.97003 * 120.00273 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1932 0.0000 4 6 3.5956 1.1458 0.0005 5 6 4.2347 -0.0836 0.0016 6 7 3.5455 -1.2038 0.0075 7 6 2.2155 -1.2038 0.0015 8 6 1.4844 -2.4826 0.0020 9 6 1.8747 -3.4822 0.8187 10 6 2.9185 -3.2461 1.8170 11 8 3.3653 -2.1260 1.9766 12 8 3.3810 -4.2693 2.5639 13 6 4.3378 -3.9828 3.4688 14 1 4.6998 -2.9703 3.5697 15 6 4.8592 -4.9898 4.2709 16 7 4.4192 -6.2214 4.1478 17 14 6.1858 -4.5928 5.5245 18 1 5.6679 -3.5940 6.4938 19 1 6.5696 -5.8314 6.2482 20 1 7.3742 -4.0372 4.8286 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3634 -0.8902 -0.5134 24 1 1.6894 2.1397 -0.0004 25 1 4.1719 2.0593 0.0010 26 1 5.3139 -0.1224 0.0016 27 1 0.6356 -2.6195 -0.6517 28 1 1.4171 -4.4569 0.7359 29 1 4.7835 -6.9249 4.7077 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759797456.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:18 Heat of formation + Delta-G solvation = -9.731866 kcal Electronic energy + Delta-G solvation = -15679.353943 eV Core-core repulsion = 12955.237931 eV Total energy + Delta-G solvation = -2724.116012 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.88558 -38.58767 -35.33772 -33.60396 -32.91752 -32.10357 -30.31704 -26.98390 -25.72638 -24.02737 -21.96986 -21.46779 -18.81401 -17.67629 -17.12282 -16.01575 -15.62695 -14.83260 -14.51791 -14.24223 -14.07757 -13.87587 -13.13185 -12.81796 -12.64370 -12.49881 -12.31298 -11.88311 -11.52973 -11.17651 -11.02316 -10.44256 -10.38317 -9.81268 -9.73497 -9.21229 -8.82320 -8.65794 -8.47877 -7.92829 -6.38833 -3.98669 1.09911 1.71636 2.21859 3.20519 3.20923 3.24940 4.01546 4.22769 4.33490 4.73123 4.74511 4.95580 5.10321 5.22701 5.25877 5.34805 5.62719 5.66756 5.79970 5.83397 6.01270 6.18386 6.35166 6.37433 6.53504 6.68712 7.09393 7.18922 7.45308 8.01799 8.57742 8.87654 9.10251 9.98091 10.79461 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.036514 B = 0.006831 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.635633 B = 4098.049744 C = 4584.485907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.135 4.135 3 C -0.090 4.090 4 C -0.178 4.178 5 C 0.099 3.901 6 N -0.413 5.413 7 C 0.167 3.833 8 C -0.085 4.085 9 C -0.108 4.108 10 C 0.417 3.583 11 O -0.532 6.532 12 O -0.212 6.212 13 C -0.366 4.366 14 H 0.094 0.906 15 C 0.039 3.961 16 N -0.862 5.862 17 Si 0.944 3.056 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.270 1.270 21 H 0.070 0.930 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.125 0.875 25 H 0.125 0.875 26 H 0.147 0.853 27 H 0.141 0.859 28 H 0.135 0.865 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.913 10.436 -8.176 14.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.137 4.137 3 C -0.115 4.115 4 C -0.198 4.198 5 C -0.061 4.061 6 N -0.122 5.122 7 C 0.032 3.968 8 C -0.104 4.104 9 C -0.129 4.129 10 C 0.265 3.735 11 O -0.429 6.429 12 O -0.119 6.119 13 C -0.443 4.443 14 H 0.112 0.888 15 C -0.166 4.166 16 N -0.499 5.499 17 Si 0.768 3.232 18 H -0.196 1.196 19 H -0.204 1.204 20 H -0.195 1.195 21 H 0.089 0.911 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.143 0.857 25 H 0.143 0.857 26 H 0.164 0.836 27 H 0.158 0.842 28 H 0.153 0.847 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.301 9.676 -8.001 13.629 hybrid contribution 0.288 0.946 0.773 1.255 sum -5.014 10.623 -7.228 13.792 Atomic orbital electron populations 1.20695 0.90760 1.02422 1.02427 1.20830 0.96862 0.93486 1.02547 1.21190 0.94129 0.97392 0.98830 1.22096 0.95149 0.99306 1.03218 1.22584 1.00024 0.87555 0.95932 1.67879 1.07104 1.30507 1.06688 1.19699 0.89530 0.92145 0.95397 1.21904 0.98213 0.91225 0.99046 1.22513 0.96397 0.98964 0.94986 1.20880 0.84507 0.84264 0.83844 1.90684 1.59336 1.24392 1.68492 1.83929 1.48375 1.36322 1.43288 1.21192 1.13938 0.96626 1.12504 0.88826 1.25365 0.98565 0.94468 0.98155 1.69953 1.41205 1.00297 1.38408 0.85739 0.79994 0.77856 0.79566 1.19557 1.20370 1.19473 0.91102 0.91863 0.91259 0.85677 0.85665 0.83562 0.84174 0.84695 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.64 36.01 0.35 -0.86 15 2 C -0.14 -2.09 5.94 -104.00 -0.62 -2.71 15 3 C -0.09 -1.27 9.85 -39.33 -0.39 -1.65 15 4 C -0.18 -2.61 10.11 -39.29 -0.40 -3.01 15 5 C 0.10 1.77 11.13 -17.56 -0.20 1.57 15 6 N -0.41 -8.68 7.13 -9.90 -0.07 -8.75 15 7 C 0.17 3.13 5.20 -83.14 -0.43 2.70 15 8 C -0.08 -1.43 8.91 -37.10 -0.33 -1.76 15 9 C -0.11 -2.15 10.17 -37.52 -0.38 -2.54 15 10 C 0.42 10.93 7.55 33.99 0.26 11.18 15 11 O -0.53 -14.72 11.60 -19.38 -0.22 -14.94 15 12 O -0.21 -6.34 9.75 -21.75 -0.21 -6.55 15 13 C -0.37 -11.18 9.65 30.98 0.30 -10.88 15 14 H 0.09 2.88 6.86 -52.49 -0.36 2.52 15 15 C 0.04 1.12 5.50 -17.51 -0.10 1.02 15 16 N -0.86 -25.78 13.67 55.49 0.76 -25.02 15 17 Si 0.94 21.84 29.55 -169.99 -5.02 16.81 15 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 21 H 0.07 0.82 8.14 -51.93 -0.42 0.39 15 22 H 0.06 0.58 8.10 -51.93 -0.42 0.16 15 23 H 0.07 0.70 6.55 -51.93 -0.34 0.36 15 24 H 0.13 1.35 8.06 -52.49 -0.42 0.93 15 25 H 0.13 1.42 8.06 -52.49 -0.42 1.00 15 26 H 0.15 2.31 8.06 -52.49 -0.42 1.89 15 27 H 0.14 1.69 7.11 -52.49 -0.37 1.32 15 28 H 0.14 2.29 8.06 -52.49 -0.42 1.87 15 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 LS Contribution 263.95 15.07 3.98 3.98 Total: -1.00 -35.64 263.95 -5.47 -41.11 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -2.74 Total: 0.30 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.94 Total: -6.94 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.69 Total: -33.77 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.44 Total: -21.50 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -35.64 -5.47 -41.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759797456.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.376 kcal (2) G-P(sol) polarization free energy of solvation -35.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds