Wall clock time and date at job start Mon Mar 30 2020 03:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38457 * 120.48139 * 2 1 4 4 C 1.38709 * 118.52463 * 179.97438 * 3 2 1 5 5 C 1.38557 * 119.42145 * 359.97438 * 4 3 2 6 6 N 1.31533 * 120.93495 * 359.72815 * 5 4 3 7 7 C 1.32993 * 121.59524 * 0.56002 * 6 5 4 8 8 C 1.47310 * 119.75580 * 179.71130 * 7 6 5 9 9 C 1.34851 * 119.99991 * 44.04910 * 8 7 6 10 10 C 1.46352 * 120.00287 * 7.36426 * 9 8 7 11 11 O 1.21645 * 119.99629 * 5.33658 * 10 9 8 12 12 O 1.34856 * 120.00441 * 185.06128 * 10 9 8 13 13 C 1.34774 * 117.00495 * 180.28173 * 12 10 9 14 14 H 1.08000 * 119.99636 * 359.97438 * 13 12 10 15 15 C 1.38895 * 120.00560 * 180.02562 * 13 12 10 16 16 N 1.31364 * 119.99518 * 359.97438 * 15 13 12 17 17 Si 1.86791 * 120.00272 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47158 * 60.00095 * 17 15 13 19 19 H 1.48504 * 109.47215 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47454 * 299.99835 * 17 15 13 21 21 H 1.09006 * 109.46845 * 270.02315 * 1 2 3 22 22 H 1.08993 * 109.47058 * 30.02468 * 1 2 3 23 23 H 1.09000 * 109.47310 * 150.02693 * 1 2 3 24 24 H 1.07994 * 120.73676 * 359.97438 * 3 2 1 25 25 H 1.08002 * 120.28901 * 180.02562 * 4 3 2 26 26 H 1.07996 * 119.52560 * 179.97438 * 5 4 3 27 27 H 1.08000 * 119.99525 * 224.04540 * 8 7 6 28 28 H 1.07997 * 119.99666 * 187.36558 * 9 8 7 29 29 H 0.97003 * 120.00273 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1932 0.0000 4 6 3.5956 1.1458 0.0005 5 6 4.2347 -0.0836 0.0016 6 7 3.5455 -1.2038 0.0075 7 6 2.2155 -1.2038 0.0015 8 6 1.4844 -2.4826 0.0020 9 6 1.8747 -3.4822 0.8187 10 6 2.9185 -3.2461 1.8170 11 8 3.3653 -2.1260 1.9766 12 8 3.3810 -4.2693 2.5639 13 6 4.3378 -3.9828 3.4688 14 1 4.6998 -2.9703 3.5697 15 6 4.8592 -4.9898 4.2709 16 7 4.4192 -6.2214 4.1478 17 14 6.1858 -4.5928 5.5245 18 1 5.6679 -3.5940 6.4938 19 1 6.5696 -5.8314 6.2482 20 1 7.3742 -4.0372 4.8286 21 1 -0.3633 0.0004 1.0277 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3634 -0.8902 -0.5134 24 1 1.6894 2.1397 -0.0004 25 1 4.1719 2.0593 0.0010 26 1 5.3139 -0.1224 0.0016 27 1 0.6356 -2.6195 -0.6517 28 1 1.4171 -4.4569 0.7359 29 1 4.7835 -6.9249 4.7077 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759797456.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:18 Heat of formation + Delta-G solvation = -33.539458 kcal Electronic energy + Delta-G solvation = -15680.386318 eV Core-core repulsion = 12955.237931 eV Total energy + Delta-G solvation = -2725.148386 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.32049 -40.48388 -37.31697 -35.00581 -34.29844 -34.23219 -31.66203 -28.19034 -27.66250 -25.62319 -23.48900 -22.77903 -20.49357 -19.84173 -18.79936 -17.50222 -17.13655 -16.44602 -16.30167 -16.16328 -15.49472 -15.38652 -14.51514 -14.33007 -13.90542 -13.70514 -13.62489 -13.29661 -13.21463 -13.04314 -12.33986 -12.22506 -12.18049 -11.97899 -11.22475 -10.84576 -10.68877 -10.33181 -9.99569 -9.32964 -8.53806 -6.28910 -0.28633 0.46420 0.84843 1.30678 1.39996 1.47160 2.13570 2.31347 2.94798 3.02792 3.05775 3.48267 3.85106 4.01040 4.14773 4.20161 4.48511 4.58771 4.66691 4.78558 4.84045 4.90235 5.05461 5.11937 5.23074 5.30313 5.41710 5.55692 5.85351 5.94728 6.78047 6.91279 7.27369 7.86795 8.67681 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.036514 B = 0.006831 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.635633 B = 4098.049744 C = 4584.485907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.128 4.128 3 C -0.093 4.093 4 C -0.164 4.164 5 C 0.063 3.937 6 N -0.465 5.465 7 C 0.113 3.887 8 C -0.028 4.028 9 C -0.158 4.158 10 C 0.416 3.584 11 O -0.552 6.552 12 O -0.250 6.250 13 C -0.411 4.411 14 H 0.075 0.925 15 C -0.008 4.008 16 N -0.904 5.904 17 Si 1.018 2.982 18 H -0.262 1.262 19 H -0.257 1.257 20 H -0.264 1.264 21 H 0.071 0.929 22 H 0.093 0.907 23 H 0.085 0.915 24 H 0.168 0.832 25 H 0.161 0.839 26 H 0.148 0.852 27 H 0.199 0.801 28 H 0.161 0.839 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.317 12.580 -8.919 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.130 4.130 3 C -0.119 4.119 4 C -0.184 4.184 5 C -0.096 4.096 6 N -0.174 5.174 7 C -0.022 4.022 8 C -0.047 4.047 9 C -0.178 4.178 10 C 0.265 3.735 11 O -0.448 6.448 12 O -0.159 6.159 13 C -0.487 4.487 14 H 0.093 0.907 15 C -0.207 4.207 16 N -0.542 5.542 17 Si 0.836 3.164 18 H -0.187 1.187 19 H -0.181 1.181 20 H -0.188 1.188 21 H 0.089 0.911 22 H 0.112 0.888 23 H 0.104 0.896 24 H 0.186 0.814 25 H 0.179 0.821 26 H 0.166 0.834 27 H 0.216 0.784 28 H 0.178 0.822 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.726 11.835 -8.770 16.193 hybrid contribution 0.601 0.579 0.766 1.133 sum -6.125 12.414 -8.004 15.990 Atomic orbital electron populations 1.20837 0.87557 1.04903 1.03073 1.21331 0.99138 0.92655 0.99849 1.21769 0.93977 0.98804 0.97319 1.22491 0.96121 0.99262 1.00506 1.22862 1.00541 0.88529 0.97703 1.67727 1.08861 1.32604 1.08241 1.20199 0.89474 0.94167 0.98324 1.22678 0.97062 0.89055 0.95858 1.22524 0.97131 1.01747 0.96361 1.22134 0.84375 0.83429 0.83518 1.90649 1.60089 1.25065 1.69036 1.83954 1.49388 1.37975 1.44624 1.21289 1.16071 0.96534 1.14807 0.90720 1.26551 1.00586 0.93946 0.99658 1.70039 1.42918 1.01346 1.39863 0.84697 0.76470 0.78596 0.76610 1.18686 1.18064 1.18846 0.91084 0.88787 0.89590 0.81425 0.82094 0.83432 0.78436 0.82173 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 9.64 71.24 0.69 -1.24 15 2 C -0.13 -3.54 5.94 -19.46 -0.12 -3.66 15 3 C -0.09 -2.29 9.85 22.43 0.22 -2.06 15 4 C -0.16 -4.46 10.11 22.46 0.23 -4.23 15 5 C 0.06 2.27 11.13 84.81 0.94 3.22 15 6 N -0.47 -19.87 7.13 -185.24 -1.32 -21.19 15 7 C 0.11 4.09 5.20 41.70 0.22 4.31 15 8 C -0.03 -0.89 8.91 23.88 0.21 -0.68 15 9 C -0.16 -6.30 10.17 23.60 0.24 -6.06 15 10 C 0.42 22.84 7.55 69.93 0.53 23.36 15 11 O -0.55 -31.91 11.60 19.36 0.22 -31.69 15 12 O -0.25 -15.89 9.75 10.89 0.11 -15.79 15 13 C -0.41 -26.53 9.65 67.98 0.66 -25.88 15 14 H 0.08 4.92 6.86 -2.91 -0.02 4.90 15 15 C -0.01 -0.46 5.50 84.92 0.47 0.01 15 16 N -0.90 -55.88 13.67 21.65 0.30 -55.58 15 17 Si 1.02 45.71 29.55 68.60 2.03 47.74 15 18 H -0.26 -11.32 7.11 99.48 0.71 -10.61 15 19 H -0.26 -10.52 7.11 99.48 0.71 -9.82 15 20 H -0.26 -11.48 7.11 99.48 0.71 -10.77 15 21 H 0.07 1.35 8.14 -2.38 -0.02 1.33 15 22 H 0.09 1.16 8.10 -2.39 -0.02 1.14 15 23 H 0.09 1.27 6.55 -2.39 -0.02 1.25 15 24 H 0.17 2.66 8.06 -2.91 -0.02 2.63 15 25 H 0.16 3.09 8.06 -2.91 -0.02 3.07 15 26 H 0.15 4.90 8.06 -2.91 -0.02 4.87 15 27 H 0.20 3.80 7.11 -2.91 -0.02 3.78 15 28 H 0.16 5.42 8.06 -2.91 -0.02 5.39 15 29 H 0.28 15.57 8.31 -92.71 -0.77 14.80 15 Total: -1.00 -84.24 263.95 6.78 -77.46 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 1.16 Total: 11.97 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 4.28 Total: -12.92 kcal Atomic # 7 Polarization: -75.75 SS G_CDS: -1.02 Total: -76.77 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: 0.33 Total: -47.47 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -84.24 6.78 -77.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759797456.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.918 kcal (2) G-P(sol) polarization free energy of solvation -84.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds