Wall clock time and date at job start Mon Mar 30 2020 03:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38405 * 120.33129 * 2 1 4 4 N 1.31948 * 121.15072 * 180.02562 * 3 2 1 5 5 C 1.31654 * 121.90265 * 359.97218 * 4 3 2 6 6 C 1.39832 * 120.52229 * 359.97438 * 5 4 3 7 7 C 1.47138 * 120.58759 * 180.02562 * 6 5 4 8 8 C 1.35003 * 120.00133 * 0.02562 * 7 6 5 9 9 C 1.46140 * 120.00247 * 179.97438 * 8 7 6 10 10 O 1.21673 * 119.99887 * 0.02562 * 9 8 7 11 11 O 1.34893 * 120.00036 * 179.73015 * 9 8 7 12 12 C 1.34797 * 116.99933 * 180.27888 * 11 9 8 13 13 H 1.08003 * 119.99994 * 359.97438 * 12 11 9 14 14 C 1.38853 * 120.00208 * 179.97438 * 12 11 9 15 15 N 1.31390 * 120.00385 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99886 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47388 * 89.99346 * 16 14 12 18 18 H 1.48499 * 109.47095 * 210.00054 * 16 14 12 19 19 H 1.48501 * 109.47101 * 329.99602 * 16 14 12 20 20 C 1.38272 * 120.33050 * 180.27449 * 2 1 3 21 21 H 1.09000 * 109.46711 * 90.00296 * 1 2 3 22 22 H 1.08999 * 109.47009 * 210.00330 * 1 2 3 23 23 H 1.09001 * 109.47360 * 330.00681 * 1 2 3 24 24 H 1.08003 * 119.42712 * 0.02562 * 3 2 1 25 25 H 1.08002 * 119.73474 * 180.02562 * 5 4 3 26 26 H 1.08002 * 120.00289 * 180.02562 * 7 6 5 27 27 H 1.08001 * 120.00109 * 0.02562 * 8 7 6 28 28 H 0.97002 * 120.00114 * 179.97438 * 15 14 12 29 29 H 1.07993 * 120.87157 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1946 0.0000 4 7 3.5253 1.2135 -0.0005 5 6 4.2370 0.1059 -0.0005 6 6 3.6075 -1.1427 0.0006 7 6 4.4014 -2.3815 0.0012 8 6 5.7500 -2.3190 0.0012 9 6 6.5386 -3.5493 0.0024 10 8 5.9797 -4.6301 0.0028 11 8 7.8861 -3.4868 -0.0032 12 6 8.5530 -4.6582 -0.0076 13 1 8.0074 -5.5903 -0.0062 14 6 9.9415 -4.6666 -0.0139 15 7 10.5917 -5.8084 -0.0177 16 14 10.8853 -3.0545 -0.0155 17 1 11.1416 -2.6295 1.3840 18 1 12.1785 -3.2387 -0.7217 19 1 10.0858 -2.0136 -0.7103 20 6 2.2053 -1.1935 -0.0057 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3634 0.8900 0.5137 24 1 1.6620 2.1276 0.0004 25 1 5.3155 0.1621 -0.0005 26 1 3.9054 -3.3409 0.0016 27 1 6.2461 -1.3597 0.0012 28 1 11.5617 -5.8142 -0.0225 29 1 1.6850 -2.1398 -0.0107 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772372760.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:26 Heat of formation + Delta-G solvation = -55.588749 kcal Electronic energy + Delta-G solvation = -14801.256255 eV Core-core repulsion = 12075.151740 eV Total energy + Delta-G solvation = -2726.104515 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.34172 -40.99275 -37.66127 -35.63846 -34.58541 -34.54483 -31.50431 -28.19994 -28.01718 -25.49454 -24.09263 -22.50638 -20.40446 -20.05025 -19.04210 -17.96948 -17.51331 -16.69452 -16.66956 -15.85172 -15.76436 -15.29078 -14.62552 -14.48915 -14.24947 -14.04038 -13.65408 -13.38818 -13.28510 -13.13264 -12.53064 -12.46492 -12.29738 -11.88456 -11.88002 -11.28343 -10.86833 -10.47096 -10.31868 -9.48126 -8.58997 -6.42881 -0.69562 0.22502 0.79105 1.33505 1.39047 1.54937 2.08573 2.25276 2.39997 2.82811 2.93238 3.41080 3.67293 3.80887 3.88709 3.99790 4.09107 4.27744 4.40927 4.63021 4.77879 4.87450 4.92748 5.19368 5.21129 5.31197 5.32671 5.46801 5.70871 5.85882 6.47579 6.76927 6.92898 7.53210 8.53517 Molecular weight = 233.08amu Principal moments of inertia in cm(-1) A = 0.050759 B = 0.004741 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.497998 B = 5904.395298 C = 6440.735230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.136 4.136 3 C 0.098 3.902 4 N -0.505 5.505 5 C 0.098 3.902 6 C -0.125 4.125 7 C -0.011 4.011 8 C -0.171 4.171 9 C 0.436 3.564 10 O -0.580 6.580 11 O -0.250 6.250 12 C -0.408 4.408 13 H 0.059 0.941 14 C 0.015 3.985 15 N -0.911 5.911 16 Si 0.985 3.015 17 H -0.258 1.258 18 H -0.263 1.263 19 H -0.250 1.250 20 C -0.060 4.060 21 H 0.085 0.915 22 H 0.077 0.923 23 H 0.087 0.913 24 H 0.184 0.816 25 H 0.167 0.833 26 H 0.134 0.866 27 H 0.161 0.839 28 H 0.291 0.709 29 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.047 16.568 -0.007 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.137 4.137 3 C -0.059 4.059 4 N -0.212 5.212 5 C -0.059 4.059 6 C -0.127 4.127 7 C -0.030 4.030 8 C -0.189 4.189 9 C 0.287 3.713 10 O -0.479 6.479 11 O -0.159 6.159 12 C -0.484 4.484 13 H 0.077 0.923 14 C -0.185 4.185 15 N -0.550 5.550 16 Si 0.804 3.196 17 H -0.183 1.183 18 H -0.187 1.187 19 H -0.173 1.173 20 C -0.085 4.085 21 H 0.103 0.897 22 H 0.096 0.904 23 H 0.106 0.894 24 H 0.201 0.799 25 H 0.184 0.816 26 H 0.151 0.849 27 H 0.178 0.822 28 H 0.101 0.899 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -17.531 16.986 -0.009 24.410 hybrid contribution 0.352 -1.301 0.009 1.348 sum -17.179 15.685 0.000 23.262 Atomic orbital electron populations 1.20812 0.87331 1.04535 1.03786 1.21228 0.99499 0.93016 0.99996 1.23389 0.89484 0.99156 0.93865 1.67699 1.09278 1.31373 1.12882 1.23332 1.01183 0.86931 0.94406 1.19910 0.94740 0.93337 1.04713 1.22217 0.92478 0.97476 0.90829 1.22198 0.93823 0.95319 1.07579 1.21759 0.81672 0.90697 0.77177 1.90687 1.72360 1.33188 1.51681 1.83590 1.19580 1.34932 1.77842 1.20377 0.90554 0.83101 1.54321 0.92348 1.25638 0.95796 1.03077 0.94025 1.69674 1.10056 1.28005 1.47284 0.85058 0.77460 0.77150 0.79947 1.18279 1.18738 1.17343 1.22051 0.92046 1.00210 0.94214 0.89668 0.90373 0.89410 0.79926 0.81581 0.84860 0.82172 0.89866 0.82430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.03 71.24 0.71 -0.13 15 2 C -0.14 -2.06 5.89 -19.82 -0.12 -2.17 15 3 C 0.10 1.68 10.85 84.72 0.92 2.60 15 4 N -0.50 -11.75 10.34 -194.47 -2.01 -13.76 15 5 C 0.10 2.35 10.59 85.11 0.90 3.26 15 6 C -0.12 -2.97 5.88 -20.05 -0.12 -3.08 15 7 C -0.01 -0.31 9.48 23.86 0.23 -0.08 15 8 C -0.17 -5.95 9.54 23.58 0.23 -5.72 15 9 C 0.44 21.59 7.82 69.87 0.55 22.14 15 10 O -0.58 -32.66 15.48 19.27 0.30 -32.36 15 11 O -0.25 -13.81 8.58 10.26 0.09 -13.72 15 12 C -0.41 -25.65 10.11 67.97 0.69 -24.97 15 13 H 0.06 4.16 7.09 -2.91 -0.02 4.14 15 14 C 0.02 0.90 5.50 84.91 0.47 1.36 15 15 N -0.91 -55.43 13.95 21.64 0.30 -55.13 15 16 Si 0.98 44.00 28.62 68.60 1.96 45.97 15 17 H -0.26 -10.92 7.11 99.48 0.71 -10.21 15 18 H -0.26 -10.88 7.11 99.48 0.71 -10.17 15 19 H -0.25 -10.73 7.11 99.48 0.71 -10.03 15 20 C -0.06 -1.11 9.63 22.78 0.22 -0.89 15 21 H 0.08 0.54 8.14 -2.39 -0.02 0.52 15 22 H 0.08 0.54 8.09 -2.39 -0.02 0.52 15 23 H 0.09 0.43 8.09 -2.39 -0.02 0.42 15 24 H 0.18 1.94 8.06 -2.91 -0.02 1.91 15 25 H 0.17 3.64 6.19 -2.91 -0.02 3.63 15 26 H 0.13 4.01 7.52 -2.91 -0.02 3.99 15 27 H 0.16 4.56 6.11 -2.91 -0.02 4.54 15 28 H 0.29 15.89 8.31 -92.71 -0.77 15.12 15 29 H 0.16 2.25 8.06 -2.91 -0.02 2.23 15 Total: -1.00 -76.59 269.28 6.48 -70.11 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.17 Total: 6.59 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 4.67 Total: -7.70 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -1.71 Total: -68.89 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: 0.39 Total: -46.08 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.96 Total: 45.97 kcal Total: -76.59 6.48 -70.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772372760.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.519 kcal (2) G-P(sol) polarization free energy of solvation -76.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds