Wall clock time and date at job start Mon Mar 30 2020 03:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30993 * 1 3 3 Si 1.86795 * 119.99823 * 2 1 4 4 H 1.48501 * 109.47105 * 239.99849 * 3 2 1 5 5 H 1.48495 * 109.47536 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47144 * 120.00356 * 3 2 1 7 7 C 1.39738 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99745 * 179.97438 * 7 2 1 9 9 C 1.41487 * 120.00045 * 0.02562 * 7 2 1 10 10 N 1.34849 * 126.02137 * 0.18476 * 9 7 2 11 11 N 1.28670 * 109.63152 * 180.27863 * 10 9 7 12 12 N 1.40121 * 108.94029 * 359.72903 * 11 10 9 13 13 C 1.46502 * 126.49486 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.46977 * 270.02122 * 13 12 11 15 15 O 1.42898 * 109.47065 * 179.97438 * 14 13 12 16 16 C 1.35022 * 107.01196 * 359.97438 * 12 11 10 17 17 C 1.50703 * 126.77093 * 180.02562 * 16 12 11 18 18 F 1.39904 * 109.46969 * 59.99854 * 17 16 12 19 19 F 1.39901 * 109.47086 * 300.00257 * 17 16 12 20 20 H 0.97000 * 119.99715 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46894 * 30.02438 * 13 12 11 22 22 H 1.08998 * 109.47271 * 150.02763 * 13 12 11 23 23 H 1.08998 * 109.47046 * 300.00463 * 14 13 12 24 24 H 1.09007 * 109.46848 * 60.00073 * 14 13 12 25 25 H 0.96702 * 113.99768 * 179.97438 * 15 14 13 26 26 H 1.09002 * 109.47152 * 179.97438 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6177 0.0000 4 1 3.0976 1.6964 -1.2125 5 1 1.2789 2.7464 -0.0006 6 1 3.0977 1.6964 1.2125 7 6 2.0086 -1.2102 0.0005 8 1 3.0885 -1.2101 0.0001 9 6 1.3012 -2.4355 0.0005 10 7 -0.0399 -2.5769 -0.0035 11 7 -0.3427 -3.8275 0.0038 12 7 0.8384 -4.5814 0.0069 13 6 0.9392 -6.0429 0.0154 14 6 0.9754 -6.5432 1.4609 15 8 1.0730 -7.9688 1.4693 16 6 1.8661 -3.7057 0.0005 17 6 3.3357 -4.0394 0.0003 18 9 3.6428 -4.7922 -1.1383 19 9 3.6461 -4.7794 1.1462 20 1 -0.4850 0.8401 0.0004 21 1 0.0759 -6.4696 -0.4952 22 1 1.8517 -6.3473 -0.4972 23 1 1.8386 -6.1164 1.9716 24 1 0.0628 -6.2388 1.9737 25 1 1.1011 -8.3559 2.3550 26 1 3.9176 -3.1177 -0.0062 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544710.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:18 Heat of formation + Delta-G solvation = -67.771940 kcal Electronic energy + Delta-G solvation = -16619.612948 eV Core-core repulsion = 13371.043351 eV Total energy + Delta-G solvation = -3248.569597 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.35071 -46.35400 -40.16848 -36.94051 -34.04929 -33.00274 -30.59632 -28.54759 -26.22646 -24.58283 -23.02858 -20.63254 -19.75261 -17.86331 -17.01328 -16.63085 -16.57897 -16.10688 -15.10809 -14.87955 -14.73208 -14.30916 -13.31638 -13.16724 -13.05954 -12.77173 -12.19985 -12.07115 -11.73593 -11.45085 -11.28067 -11.20413 -10.59685 -10.39219 -10.01192 -9.90407 -9.52261 -9.22981 -8.83159 -7.82589 -6.64930 -4.51795 2.40074 3.03963 3.08225 3.09553 3.22880 3.93775 4.03191 4.40398 4.58769 5.03356 5.05035 5.20989 5.29949 5.46589 5.55501 5.78327 5.82781 6.01709 6.49030 6.81147 7.06196 7.19904 7.58933 7.82902 8.09009 8.46860 8.75976 9.85784 10.29986 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.035300 B = 0.008456 C = 0.007378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.006466 B = 3310.389146 C = 3794.229008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.448 4.448 8 H 0.086 0.914 9 C 0.189 3.811 10 N -0.226 5.226 11 N -0.091 5.091 12 N -0.361 5.361 13 C 0.139 3.861 14 C 0.061 3.939 15 O -0.573 6.573 16 C -0.218 4.218 17 C 0.364 3.636 18 F -0.214 7.214 19 F -0.215 7.215 20 H 0.279 0.721 21 H 0.094 0.906 22 H 0.090 0.910 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.382 0.618 26 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.034 -6.186 2.268 8.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.482 4.482 8 H 0.104 0.896 9 C 0.061 3.939 10 N -0.100 5.100 11 N -0.068 5.068 12 N -0.162 5.162 13 C 0.014 3.986 14 C -0.018 4.018 15 O -0.377 6.377 16 C -0.346 4.346 17 C 0.309 3.691 18 F -0.195 7.195 19 F -0.196 7.196 20 H 0.090 0.910 21 H 0.112 0.888 22 H 0.108 0.892 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.229 0.771 26 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.295 -6.054 1.611 7.078 hybrid contribution 1.494 0.437 0.653 1.688 sum 4.789 -5.617 2.265 7.721 Atomic orbital electron populations 1.69989 1.07021 1.28838 1.32536 1.25863 0.94949 1.01007 0.92981 0.86266 0.79842 0.80207 0.79793 1.18940 1.20277 1.18953 1.18638 0.93756 0.87991 1.47847 0.89640 1.18925 0.87713 0.90974 0.96279 1.75219 1.13633 1.05202 1.15976 1.81474 1.05513 0.98778 1.21056 1.49095 1.05567 1.04964 1.56525 1.21122 1.04389 0.76684 0.96359 1.22556 1.01150 0.80661 0.97445 1.86356 1.97513 1.19995 1.33872 1.21460 0.89151 0.91853 1.32138 1.19496 0.91263 0.88162 0.70218 1.92940 1.94279 1.79859 1.52456 1.92925 1.94213 1.80491 1.51972 0.90998 0.88802 0.89172 0.92349 0.92914 0.77139 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.25 11.92 55.54 0.66 -19.59 15 2 C 0.07 1.85 5.49 -17.35 -0.10 1.75 15 3 Si 0.91 18.20 29.56 -169.99 -5.02 13.18 15 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 15 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 15 7 C -0.45 -11.42 9.12 -37.78 -0.34 -11.77 15 8 H 0.09 1.95 6.83 -52.49 -0.36 1.59 15 9 C 0.19 5.03 6.72 -85.02 -0.57 4.46 15 10 N -0.23 -6.35 10.56 32.05 0.34 -6.01 15 11 N -0.09 -2.33 13.74 60.35 0.83 -1.50 15 12 N -0.36 -8.17 3.63 -56.17 -0.20 -8.37 15 13 C 0.14 2.52 6.67 -4.04 -0.03 2.50 15 14 C 0.06 0.98 7.37 37.16 0.27 1.25 15 15 O -0.57 -7.84 13.66 -35.23 -0.48 -8.33 15 16 C -0.22 -5.10 6.55 -80.90 -0.53 -5.63 15 17 C 0.36 7.10 5.32 36.01 0.19 7.29 15 18 F -0.21 -4.12 16.51 2.25 0.04 -4.08 15 19 F -0.21 -4.03 16.19 2.25 0.04 -4.00 15 20 H 0.28 6.79 8.30 -40.82 -0.34 6.45 15 21 H 0.09 1.60 8.14 -51.93 -0.42 1.17 15 22 H 0.09 1.60 7.12 -51.93 -0.37 1.23 15 23 H 0.06 0.97 6.99 -51.93 -0.36 0.61 15 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 15 25 H 0.38 3.29 9.12 45.56 0.42 3.70 15 26 H 0.13 2.23 6.89 -51.93 -0.36 1.87 15 LS Contribution 245.86 15.07 3.71 3.71 Total: -1.00 -30.45 245.86 -2.22 -32.67 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -1.01 Total: 2.47 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -1.10 Total: -0.15 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 1.63 Total: -35.47 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -0.48 Total: -8.33 kcal Atomic # 9 Polarization: -8.15 SS G_CDS: 0.07 Total: -8.08 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.02 Total: 13.18 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.45 -2.22 -32.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544710.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.106 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds