Wall clock time and date at job start Mon Mar 30 2020 03:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30993 * 1 3 3 Si 1.86795 * 119.99823 * 2 1 4 4 H 1.48501 * 109.47105 * 239.99849 * 3 2 1 5 5 H 1.48495 * 109.47536 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47144 * 120.00356 * 3 2 1 7 7 C 1.39738 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99745 * 179.97438 * 7 2 1 9 9 C 1.41487 * 120.00045 * 0.02562 * 7 2 1 10 10 N 1.34849 * 126.02137 * 0.18476 * 9 7 2 11 11 N 1.28670 * 109.63152 * 180.27863 * 10 9 7 12 12 N 1.40121 * 108.94029 * 359.72903 * 11 10 9 13 13 C 1.46502 * 126.49486 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.46977 * 270.02122 * 13 12 11 15 15 O 1.42898 * 109.47065 * 179.97438 * 14 13 12 16 16 C 1.35022 * 107.01196 * 359.97438 * 12 11 10 17 17 C 1.50703 * 126.77093 * 180.02562 * 16 12 11 18 18 F 1.39904 * 109.46969 * 59.99854 * 17 16 12 19 19 F 1.39901 * 109.47086 * 300.00257 * 17 16 12 20 20 H 0.97000 * 119.99715 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.46894 * 30.02438 * 13 12 11 22 22 H 1.08998 * 109.47271 * 150.02763 * 13 12 11 23 23 H 1.08998 * 109.47046 * 300.00463 * 14 13 12 24 24 H 1.09007 * 109.46848 * 60.00073 * 14 13 12 25 25 H 0.96702 * 113.99768 * 179.97438 * 15 14 13 26 26 H 1.09002 * 109.47152 * 179.97438 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 14 2.2439 1.6177 0.0000 4 1 3.0976 1.6964 -1.2125 5 1 1.2789 2.7464 -0.0006 6 1 3.0977 1.6964 1.2125 7 6 2.0086 -1.2102 0.0005 8 1 3.0885 -1.2101 0.0001 9 6 1.3012 -2.4355 0.0005 10 7 -0.0399 -2.5769 -0.0035 11 7 -0.3427 -3.8275 0.0038 12 7 0.8384 -4.5814 0.0069 13 6 0.9392 -6.0429 0.0154 14 6 0.9754 -6.5432 1.4609 15 8 1.0730 -7.9688 1.4693 16 6 1.8661 -3.7057 0.0005 17 6 3.3357 -4.0394 0.0003 18 9 3.6428 -4.7922 -1.1383 19 9 3.6461 -4.7794 1.1462 20 1 -0.4850 0.8401 0.0004 21 1 0.0759 -6.4696 -0.4952 22 1 1.8517 -6.3473 -0.4972 23 1 1.8386 -6.1164 1.9716 24 1 0.0628 -6.2388 1.9737 25 1 1.1011 -8.3559 2.3550 26 1 3.9176 -3.1177 -0.0062 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544710.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:18 Heat of formation + Delta-G solvation = -91.433973 kcal Electronic energy + Delta-G solvation = -16620.639011 eV Core-core repulsion = 13371.043351 eV Total energy + Delta-G solvation = -3249.595659 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 233.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.92060 -47.91334 -42.04415 -38.16584 -35.79827 -34.74590 -32.41110 -30.17637 -27.94973 -26.38974 -24.54578 -22.49101 -21.46765 -19.45690 -18.52983 -18.20381 -18.15853 -17.69857 -16.74155 -16.33441 -16.30070 -16.01609 -14.86386 -14.74953 -14.69505 -14.32138 -13.84762 -13.63199 -13.36138 -12.97709 -12.92971 -12.65744 -12.34211 -12.00355 -11.76566 -11.26715 -11.19623 -11.04539 -10.68172 -9.73467 -8.46050 -6.43400 0.56649 1.47279 1.47523 1.56447 1.61545 2.15788 2.29273 2.82873 3.24916 3.34392 3.46731 3.58376 3.89950 4.00590 4.15831 4.20240 4.40209 4.61797 4.66645 4.95551 5.23610 5.36143 6.06669 6.21226 6.60856 6.72044 6.88899 7.95990 8.51711 Molecular weight = 233.07amu Principal moments of inertia in cm(-1) A = 0.035300 B = 0.008456 C = 0.007378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.006466 B = 3310.389146 C = 3794.229008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.026 3.974 3 Si 0.994 3.006 4 H -0.255 1.255 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.475 4.475 8 H 0.108 0.892 9 C 0.153 3.847 10 N -0.274 5.274 11 N -0.120 5.120 12 N -0.347 5.347 13 C 0.126 3.874 14 C 0.077 3.923 15 O -0.574 6.574 16 C -0.204 4.204 17 C 0.372 3.628 18 F -0.209 7.209 19 F -0.207 7.207 20 H 0.281 0.719 21 H 0.105 0.895 22 H 0.099 0.901 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.406 0.594 26 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.993 -6.680 2.542 10.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.191 4.191 3 Si 0.814 3.186 4 H -0.179 1.179 5 H -0.204 1.204 6 H -0.178 1.178 7 C -0.510 4.510 8 H 0.126 0.874 9 C 0.024 3.976 10 N -0.146 5.146 11 N -0.097 5.097 12 N -0.147 5.147 13 C 0.004 3.996 14 C -0.002 4.002 15 O -0.383 6.383 16 C -0.336 4.336 17 C 0.316 3.684 18 F -0.191 7.191 19 F -0.188 7.188 20 H 0.091 0.909 21 H 0.124 0.876 22 H 0.118 0.882 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.257 0.743 26 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.229 -6.620 1.905 8.648 hybrid contribution 0.920 0.326 0.573 1.132 sum 6.149 -6.293 2.479 9.141 Atomic orbital electron populations 1.70134 1.09065 1.29871 1.34391 1.26887 0.95612 1.04783 0.91822 0.85073 0.78270 0.74927 0.80330 1.17901 1.20354 1.17789 1.19152 0.94960 0.88269 1.48632 0.87409 1.19495 0.87773 0.92759 0.97615 1.75181 1.14955 1.06231 1.18271 1.81375 1.06564 0.98633 1.23089 1.49473 1.04920 1.06627 1.53640 1.21498 1.05405 0.74183 0.98531 1.22180 1.00780 0.82030 0.95253 1.86306 1.97403 1.18292 1.36279 1.22127 0.91149 0.91270 1.29004 1.19586 0.89047 0.89334 0.70391 1.92949 1.93978 1.79838 1.52302 1.92939 1.93888 1.80395 1.51600 0.90855 0.87641 0.88238 0.92820 0.93248 0.74268 0.82760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.33 11.92 21.80 0.26 -44.07 15 2 C 0.03 1.31 5.49 85.18 0.47 1.78 15 3 Si 0.99 36.90 29.56 68.60 2.03 38.93 15 4 H -0.25 -8.97 7.11 99.48 0.71 -8.26 15 5 H -0.28 -10.22 7.11 99.48 0.71 -9.52 15 6 H -0.25 -8.89 7.11 99.48 0.71 -8.18 15 7 C -0.48 -24.15 9.12 23.43 0.21 -23.94 15 8 H 0.11 4.73 6.83 -2.91 -0.02 4.71 15 9 C 0.15 8.23 6.72 39.67 0.27 8.49 15 10 N -0.27 -15.86 10.56 -52.52 -0.55 -16.41 15 11 N -0.12 -6.27 13.74 37.02 0.51 -5.76 15 12 N -0.35 -15.48 3.63 -331.62 -1.20 -16.69 15 13 C 0.13 4.38 6.67 86.38 0.58 4.95 15 14 C 0.08 2.30 7.37 71.98 0.53 2.83 15 15 O -0.57 -14.03 13.66 -148.98 -2.04 -16.07 15 16 C -0.20 -9.36 6.55 42.26 0.28 -9.08 15 17 C 0.37 13.54 5.32 71.24 0.38 13.92 15 18 F -0.21 -7.47 16.51 44.97 0.74 -6.73 15 19 F -0.21 -7.18 16.19 44.97 0.73 -6.45 15 20 H 0.28 14.12 8.30 -92.71 -0.77 13.35 15 21 H 0.11 3.42 8.14 -2.39 -0.02 3.41 15 22 H 0.10 3.29 7.12 -2.39 -0.02 3.27 15 23 H 0.05 1.66 6.99 -2.39 -0.02 1.64 15 24 H 0.05 1.51 8.14 -2.38 -0.02 1.49 15 25 H 0.41 5.66 9.12 -74.06 -0.68 4.99 15 26 H 0.16 4.90 6.89 -2.39 -0.02 4.88 15 Total: -1.00 -66.25 245.86 3.75 -62.50 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.57 Total: 11.79 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 2.71 Total: -1.04 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -0.99 Total: -82.93 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -2.04 Total: -16.07 kcal Atomic # 9 Polarization: -14.65 SS G_CDS: 1.47 Total: -13.18 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Total: -66.25 3.75 -62.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544710.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.933 kcal (2) G-P(sol) polarization free energy of solvation -66.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds