Wall clock time and date at job start Mon Mar 30 2020 02:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46691 * 2 1 4 4 C 1.46498 * 120.00239 * 274.72301 * 3 2 1 5 5 C 1.53008 * 109.46912 * 85.00063 * 4 3 2 6 6 C 1.52996 * 117.49956 * 243.62412 * 5 4 3 7 7 C 1.52996 * 60.00042 * 252.51354 * 6 5 4 8 8 S 1.65597 * 119.99791 * 95.00526 * 3 2 1 9 9 O 1.42101 * 106.40154 * 203.53789 * 8 3 2 10 10 O 1.42106 * 106.40098 * 336.45446 * 8 3 2 11 11 C 1.76193 * 107.22140 * 89.99909 * 8 3 2 12 12 H 1.08005 * 120.00325 * 359.97438 * 11 8 3 13 13 C 1.37879 * 120.00261 * 180.02562 * 11 8 3 14 14 N 1.31516 * 119.99998 * 359.97438 * 13 11 8 15 15 Si 1.86800 * 120.00055 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.47274 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.46919 * 119.99896 * 15 13 11 18 18 H 1.48506 * 109.46958 * 239.99644 * 15 13 11 19 19 H 1.08995 * 109.47574 * 60.00208 * 1 2 3 20 20 H 1.09002 * 109.46832 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47659 * 299.99430 * 1 2 3 22 22 H 1.08999 * 109.46983 * 240.00261 * 2 1 3 23 23 H 1.08998 * 109.47326 * 120.00250 * 2 1 3 24 24 H 1.08990 * 109.47572 * 205.00129 * 4 3 2 25 25 H 1.09003 * 109.47280 * 325.00485 * 4 3 2 26 26 H 1.08996 * 115.54495 * 29.33457 * 5 4 3 27 27 H 1.09000 * 117.50146 * 359.97438 * 6 5 4 28 28 H 1.08997 * 117.49805 * 145.02114 * 6 5 4 29 29 H 1.09001 * 117.50030 * 252.51432 * 7 6 5 30 30 H 1.08997 * 117.50531 * 107.48870 * 7 6 5 31 31 H 0.96993 * 120.00367 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1639 2.1068 -1.2644 5 6 0.8230 2.7357 -1.6488 6 6 0.1573 2.2477 -2.9370 7 6 0.7943 3.6377 -2.8843 8 16 2.4121 2.1202 1.4287 9 8 2.3055 3.5186 1.1999 10 8 1.6868 1.4414 2.4448 11 6 4.1169 1.7942 1.7319 12 1 4.6869 1.2034 1.0301 13 6 4.7231 2.2925 2.8656 14 7 4.0289 3.0115 3.7205 15 14 6.5303 1.9463 3.1874 16 1 7.0803 1.1199 2.0829 17 1 7.2740 3.2293 3.2641 18 1 6.6729 1.2139 4.4714 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 2.9130 2.8901 -1.1497 25 1 2.4781 1.4151 -2.0461 26 1 0.1729 3.0024 -0.8157 27 1 0.6747 1.4788 -3.5109 28 1 -0.9312 2.1931 -2.9515 29 1 0.1249 4.4977 -2.8641 30 1 1.7305 3.7831 -3.4232 31 1 4.4554 3.3624 4.5178 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068947302.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:28 Heat of formation + Delta-G solvation = -98.218471 kcal Electronic energy + Delta-G solvation = -15340.966589 eV Core-core repulsion = 12748.457462 eV Total energy + Delta-G solvation = -2592.509127 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 3.53 seconds Orbital eigenvalues (eV) -38.96282 -37.45682 -36.33874 -36.08735 -35.15903 -31.42740 -28.28251 -27.18177 -23.44551 -23.16461 -21.61759 -20.79910 -18.96436 -18.27162 -17.22532 -17.05887 -16.01369 -15.89656 -15.28984 -15.11889 -14.59673 -14.05116 -13.89325 -13.73193 -13.29477 -13.04161 -12.98754 -12.46754 -12.43558 -12.38684 -12.28925 -12.26261 -12.16896 -11.69256 -11.27892 -11.21384 -10.94101 -10.69334 -9.80801 -8.75338 -7.49927 0.33794 1.31793 1.32327 1.50539 2.19790 2.56163 2.82113 3.01707 3.77608 3.88050 4.03587 4.09691 4.17372 4.36193 4.48554 4.50383 4.61893 4.72349 4.84365 4.90314 4.97595 5.02606 5.08771 5.22679 5.33973 5.34076 5.42711 5.45292 5.89627 6.09030 6.76757 8.19922 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.036224 B = 0.008995 C = 0.008410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.787325 B = 3112.231870 C = 3328.403721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.117 3.883 3 N -1.004 6.004 4 C 0.156 3.844 5 C -0.194 4.194 6 C -0.153 4.153 7 C -0.175 4.175 8 S 2.715 3.285 9 O -1.040 7.040 10 O -1.042 7.042 11 C -1.044 5.044 12 H 0.119 0.881 13 C 0.067 3.933 14 N -0.896 5.896 15 Si 0.991 3.009 16 H -0.245 1.245 17 H -0.258 1.258 18 H -0.258 1.258 19 H 0.073 0.927 20 H 0.087 0.913 21 H 0.025 0.975 22 H 0.108 0.892 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.100 0.900 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.151 -5.177 -12.537 13.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.007 4.007 3 N -0.841 5.841 4 C 0.031 3.969 5 C -0.215 4.215 6 C -0.190 4.190 7 C -0.213 4.213 8 S 2.817 3.183 9 O -1.030 7.030 10 O -1.032 7.032 11 C -1.177 5.177 12 H 0.137 0.863 13 C -0.145 4.145 14 N -0.528 5.528 15 Si 0.808 3.192 16 H -0.168 1.168 17 H -0.182 1.182 18 H -0.182 1.182 19 H 0.092 0.908 20 H 0.106 0.894 21 H 0.044 0.956 22 H 0.126 0.874 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.126 0.874 26 H 0.090 0.910 27 H 0.133 0.867 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.813 -4.595 -11.862 13.029 hybrid contribution 1.025 0.056 0.675 1.228 sum -1.788 -4.539 -11.188 12.205 Atomic orbital electron populations 1.22248 0.95917 1.03062 1.01596 1.21343 0.94925 0.81004 1.03466 1.57518 1.81129 1.23800 1.21676 1.20881 0.95075 0.95379 0.85599 1.22715 0.99703 1.06356 0.92680 1.23120 1.00491 0.97365 0.97983 1.23050 1.03664 0.94650 0.99899 1.00146 0.75971 0.71599 0.70628 1.93294 1.89358 1.34881 1.85501 1.93288 1.75647 1.76165 1.58080 1.31079 1.22394 1.47215 1.17046 0.86319 1.26080 1.06540 0.89430 0.92492 1.70003 1.40920 1.29844 1.11996 0.85103 0.74540 0.79727 0.79799 1.16824 1.18238 1.18237 0.90806 0.89386 0.95566 0.87389 0.91982 0.91764 0.87368 0.90966 0.86679 0.88197 0.88683 0.87404 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.10 10.02 71.98 0.72 -4.37 16 2 C 0.12 3.90 6.09 86.38 0.53 4.42 16 3 N -1.00 -40.86 2.81 -515.78 -1.45 -42.30 16 4 C 0.16 5.26 5.65 86.38 0.49 5.74 16 5 C -0.19 -6.02 4.81 -10.79 -0.05 -6.07 16 6 C -0.15 -3.24 9.62 30.59 0.29 -2.95 16 7 C -0.18 -4.22 10.25 30.59 0.31 -3.91 16 8 S 2.71 150.94 4.87 -56.49 -0.28 150.67 16 9 O -1.04 -63.90 16.99 -128.00 -2.18 -66.07 16 10 O -1.04 -63.93 16.99 -128.00 -2.17 -66.10 16 11 C -1.04 -58.96 9.75 67.73 0.66 -58.30 16 12 H 0.12 6.04 7.81 -2.91 -0.02 6.02 16 13 C 0.07 3.81 5.46 84.65 0.46 4.27 16 14 N -0.90 -54.79 13.19 21.45 0.28 -54.51 16 15 Si 0.99 41.85 29.54 68.60 2.03 43.87 16 16 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 17 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 18 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 19 H 0.07 1.96 6.53 -2.39 -0.02 1.94 16 20 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 21 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.11 2.62 8.00 -2.39 -0.02 2.60 16 23 H 0.06 2.27 7.61 -2.39 -0.02 2.25 16 24 H 0.06 2.41 7.61 -2.39 -0.02 2.39 16 25 H 0.11 2.70 7.73 -2.39 -0.02 2.68 16 26 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.11 1.94 8.03 -2.39 -0.02 1.92 16 28 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.09 2.19 8.14 -2.39 -0.02 2.18 16 30 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.30 16.31 8.31 -92.71 -0.77 15.54 16 Total: -1.00 -77.09 277.86 0.75 -76.34 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 1.10 Total: 19.27 kcal Atomic # 6 Polarization: -64.58 SS G_CDS: 3.41 Total: -61.17 kcal Atomic # 7 Polarization: -95.65 SS G_CDS: -1.17 Total: -96.81 kcal Atomic # 8 Polarization: -127.82 SS G_CDS: -4.35 Total: -132.17 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: 150.94 SS G_CDS: -0.28 Total: 150.67 kcal Total: -77.09 0.75 -76.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068947302.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.879 kcal (2) G-P(sol) polarization free energy of solvation -77.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.53 seconds