Wall clock time and date at job start Mon Mar 30 2020 02:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.08252 * 2 1 4 4 C 1.53202 * 110.10312 * 238.43743 * 2 1 3 5 5 N 1.46451 * 113.70522 * 213.25723 * 4 2 1 6 6 C 1.46497 * 126.08385 * 181.68403 * 5 4 2 7 7 C 1.52995 * 109.47465 * 84.99705 * 6 5 4 8 8 C 1.50697 * 109.47195 * 179.97438 * 7 6 5 9 9 H 1.07995 * 120.00104 * 0.02562 * 8 7 6 10 10 C 1.37883 * 119.99979 * 179.97438 * 8 7 6 11 11 N 1.31509 * 119.99565 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 119.99931 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47238 * 60.00365 * 12 10 8 14 14 H 1.48505 * 109.47351 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47109 * 299.99979 * 12 10 8 16 16 S 1.67287 * 107.83284 * 1.71550 * 5 4 2 17 17 O 1.42104 * 105.40753 * 134.77843 * 16 5 4 18 18 O 1.42102 * 105.40816 * 264.88303 * 16 5 4 19 19 C 1.55566 * 110.10248 * 121.56069 * 2 1 3 20 20 H 1.09002 * 109.47153 * 180.69907 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.70098 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.70079 * 1 2 3 23 23 H 1.08999 * 108.64425 * 334.36649 * 4 2 1 24 24 H 1.09000 * 108.64519 * 92.32147 * 4 2 1 25 25 H 1.09000 * 109.46948 * 205.00263 * 6 5 4 26 26 H 1.09004 * 109.46953 * 324.99812 * 6 5 4 27 27 H 1.09004 * 109.47098 * 300.00505 * 7 6 5 28 28 H 1.09004 * 109.46948 * 60.00103 * 7 6 5 29 29 H 0.97010 * 119.99680 * 179.97438 * 11 10 8 30 30 H 1.08993 * 111.36939 * 273.78930 * 19 2 1 31 31 H 1.09002 * 111.36399 * 38.58225 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9043 1.0237 0.0000 4 6 2.0565 -0.7530 -1.2259 5 7 3.3119 -1.4673 -0.9837 6 6 4.0683 -2.2418 -1.9707 7 6 4.9852 -1.3052 -2.7599 8 6 5.7637 -2.1021 -3.7748 9 1 5.6186 -3.1696 -3.8498 10 6 6.6605 -1.4680 -4.6085 11 7 6.8367 -0.1679 -4.5175 12 14 7.6249 -2.4556 -5.8670 13 1 6.6821 -3.1262 -6.7979 14 1 8.5150 -1.5466 -6.6330 15 1 8.4447 -3.4792 -5.1702 16 16 3.7281 -1.2422 0.6209 17 8 4.1131 -2.5254 1.0947 18 8 4.6247 -0.1397 0.6273 19 6 2.0647 -0.7646 1.2448 20 1 -0.3633 -1.0276 0.0125 21 1 -0.3633 0.5029 -0.8962 22 1 -0.3634 0.5247 0.8837 23 1 1.3019 -1.4726 -1.5435 24 1 2.2156 -0.0375 -2.0326 25 1 4.6697 -2.9934 -1.4594 26 1 3.3762 -2.7337 -2.6543 27 1 4.3838 -0.5536 -3.2712 28 1 5.6773 -0.8133 -2.0764 29 1 7.4679 0.2781 -5.1037 30 1 2.1382 -0.1089 2.1123 31 1 1.4559 -1.6420 1.4636 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086549808.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:55 Heat of formation + Delta-G solvation = -103.472804 kcal Electronic energy + Delta-G solvation = -14986.380262 eV Core-core repulsion = 12393.643289 eV Total energy + Delta-G solvation = -2592.736972 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.86056 -38.06253 -36.96320 -36.10755 -34.50795 -31.35601 -28.72544 -27.46864 -25.58171 -22.86098 -21.84365 -19.89455 -18.75325 -18.00538 -17.50853 -16.87622 -16.49031 -16.18632 -15.67291 -14.87858 -14.72989 -14.26789 -13.92894 -13.80576 -13.52964 -13.21588 -13.07154 -13.00934 -12.91558 -12.69950 -12.56321 -12.11624 -11.95705 -11.74738 -11.65097 -11.40062 -11.26884 -10.57881 -9.71575 -8.21755 -6.35575 -0.73440 1.39459 1.44416 1.51669 1.57157 2.40502 2.70707 2.94109 3.11132 3.29850 3.58828 3.92757 4.05597 4.36313 4.48819 4.54217 4.69580 4.72425 4.80798 4.93418 5.06879 5.09779 5.18536 5.39132 5.43978 5.53772 5.71135 5.88158 6.19400 6.82286 7.34314 8.90445 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.040511 B = 0.006786 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.010004 B = 4125.409979 C = 4375.004491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.094 4.094 3 H 0.103 0.897 4 C 0.072 3.928 5 N -0.992 5.992 6 C 0.170 3.830 7 C 0.009 3.991 8 C -0.549 4.549 9 H 0.071 0.929 10 C -0.003 4.003 11 N -0.935 5.935 12 Si 0.973 3.027 13 H -0.259 1.259 14 H -0.284 1.284 15 H -0.268 1.268 16 S 2.529 3.471 17 O -1.005 7.005 18 O -1.007 7.007 19 C -0.534 4.534 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.085 0.915 23 H 0.096 0.904 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.000 1.000 28 H -0.023 1.023 29 H 0.264 0.736 30 H 0.174 0.826 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.512 -0.587 10.207 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.115 4.115 3 H 0.122 0.878 4 C -0.054 4.054 5 N -0.833 5.833 6 C 0.046 3.954 7 C -0.030 4.030 8 C -0.587 4.587 9 H 0.089 0.911 10 C -0.201 4.201 11 N -0.574 5.574 12 Si 0.797 3.203 13 H -0.184 1.184 14 H -0.209 1.209 15 H -0.193 1.193 16 S 2.632 3.368 17 O -0.995 6.995 18 O -0.997 6.997 19 C -0.670 4.670 20 H 0.094 0.906 21 H 0.091 0.909 22 H 0.104 0.896 23 H 0.115 0.885 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.107 0.893 27 H 0.018 0.982 28 H -0.004 1.004 29 H 0.073 0.927 30 H 0.192 0.808 31 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -15.388 -0.640 10.498 18.639 hybrid contribution 0.583 0.107 -0.949 1.119 sum -14.805 -0.533 9.549 17.626 Atomic orbital electron populations 1.21742 0.88835 1.04082 1.04059 1.22114 1.01322 0.99635 0.88432 0.87848 1.21965 0.86047 0.97435 0.99911 1.56971 1.33727 1.65154 1.27432 1.21018 0.93031 0.91942 0.89369 1.19419 0.93974 0.95331 0.94296 1.21604 1.23448 0.95181 1.18513 0.91088 1.26093 0.98067 0.96027 0.99916 1.70142 1.36753 1.10454 1.40082 0.85387 0.78386 0.78169 0.78393 1.18379 1.20910 1.19286 1.07425 0.79912 0.73970 0.75474 1.93497 1.83947 1.41591 1.80457 1.93583 1.64081 1.56018 1.85996 1.30692 1.15977 1.12783 1.07565 0.90568 0.90901 0.89606 0.88534 0.91986 0.91815 0.89344 0.98181 1.00445 0.92712 0.80806 0.80766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 9.05 71.98 0.65 -0.58 16 2 C -0.09 -1.59 3.29 -9.84 -0.03 -1.63 16 3 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 4 C 0.07 1.83 6.43 86.46 0.56 2.38 16 5 N -0.99 -35.49 3.33 -515.55 -1.72 -37.21 16 6 C 0.17 7.43 6.21 86.38 0.54 7.96 16 7 C 0.01 0.48 5.30 29.85 0.16 0.64 16 8 C -0.55 -32.32 9.11 25.60 0.23 -32.09 16 9 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 10 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 11 N -0.93 -59.53 13.29 21.45 0.28 -59.25 16 12 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 13 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 16 S 2.53 84.76 6.19 -56.49 -0.35 84.41 16 17 O -1.00 -39.90 17.85 -127.79 -2.28 -42.18 16 18 O -1.01 -44.08 18.14 -127.79 -2.32 -46.40 16 19 C -0.53 -8.44 7.06 72.87 0.51 -7.92 16 20 H 0.08 0.58 8.11 -2.39 -0.02 0.57 16 21 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 22 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 23 H 0.10 1.91 7.74 -2.39 -0.02 1.90 16 24 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.06 2.85 7.93 -2.39 -0.02 2.83 16 26 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 27 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 28 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 29 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 30 H 0.17 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.17 1.73 8.08 -2.39 -0.02 1.71 16 Total: -1.00 -84.22 274.61 -0.18 -84.41 By element: Atomic # 1 Polarization: -1.28 SS G_CDS: 1.10 Total: -0.18 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 3.08 Total: -30.96 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -1.43 Total: -96.46 kcal Atomic # 8 Polarization: -83.98 SS G_CDS: -4.60 Total: -88.58 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Atomic # 16 Polarization: 84.76 SS G_CDS: -0.35 Total: 84.41 kcal Total: -84.22 -0.18 -84.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086549808.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.067 kcal (2) G-P(sol) polarization free energy of solvation -84.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds