Wall clock time and date at job start Mon Mar 30 2020 02:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.60341 * 2 1 4 4 C 1.53188 * 109.60302 * 120.31824 * 2 1 3 5 5 N 1.46470 * 109.90009 * 182.55922 * 4 2 1 6 6 C 1.46902 * 110.99867 * 163.00260 * 5 4 2 7 7 C 1.50703 * 109.47123 * 64.78235 * 6 5 4 8 8 H 1.07993 * 119.99926 * 4.83348 * 7 6 5 9 9 C 1.37879 * 119.99944 * 184.83126 * 7 6 5 10 10 N 1.31513 * 119.99533 * 359.97438 * 9 7 6 11 11 Si 1.86788 * 120.00057 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47262 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47313 * 120.00059 * 11 9 7 14 14 H 1.48504 * 109.47347 * 240.00215 * 11 9 7 15 15 C 1.46473 * 112.46112 * 288.03441 * 5 4 2 16 16 C 1.53182 * 109.89729 * 71.96690 * 15 5 4 17 17 S 1.81814 * 109.73793 * 239.58954 * 2 1 3 18 18 O 1.42100 * 108.70222 * 302.10376 * 17 2 1 19 19 O 1.42103 * 108.70128 * 73.44906 * 17 2 1 20 20 H 1.08998 * 109.46954 * 299.68250 * 1 2 3 21 21 H 1.08998 * 109.46709 * 59.67685 * 1 2 3 22 22 H 1.08996 * 109.46763 * 179.68333 * 1 2 3 23 23 H 1.08998 * 109.39595 * 62.42626 * 4 2 1 24 24 H 1.09001 * 109.32639 * 302.64613 * 4 2 1 25 25 H 1.08995 * 109.46667 * 184.78223 * 6 5 4 26 26 H 1.08996 * 109.46773 * 304.77943 * 6 5 4 27 27 H 0.97009 * 119.99454 * 179.97438 * 10 9 7 28 28 H 1.08997 * 109.39842 * 192.09473 * 15 5 4 29 29 H 1.09002 * 109.40378 * 311.83756 * 15 5 4 30 30 H 1.09002 * 109.60173 * 177.60438 * 16 15 5 31 31 H 1.08997 * 109.73891 * 57.19890 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0439 -0.7285 1.2457 5 7 3.5073 -0.6795 1.2837 6 6 4.0100 -0.9983 2.6267 7 6 3.6635 -2.4249 2.9672 8 1 3.1935 -3.0574 2.2287 9 6 3.9465 -2.9225 4.2215 10 7 4.5193 -2.1523 5.1206 11 14 3.5176 -4.6909 4.6433 12 1 2.8860 -5.3412 3.4671 13 1 4.7544 -5.4260 5.0112 14 1 2.5709 -4.7114 5.7873 15 6 4.1226 -1.5440 0.2740 16 6 3.9255 -0.9397 -1.1197 17 16 2.1440 -0.8663 -1.4759 18 8 1.6246 -2.1889 -1.4770 19 8 1.9370 -0.0362 -2.6105 20 1 -0.3633 0.5089 0.8928 21 1 -0.3633 0.5188 -0.8871 22 1 -0.3633 -1.0276 -0.0057 23 1 1.7171 -1.7679 1.2179 24 1 1.6423 -0.2464 2.1370 25 1 5.0924 -0.8721 2.6488 26 1 3.5513 -0.3293 3.3546 27 1 4.7180 -2.5024 6.0032 28 1 5.1887 -1.6390 0.4799 29 1 3.6589 -2.5297 0.3101 30 1 4.4215 -1.5644 -1.8626 31 1 4.3458 0.0656 -1.1479 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155511548.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:55 Heat of formation + Delta-G solvation = -71.055122 kcal Electronic energy + Delta-G solvation = -15372.048863 eV Core-core repulsion = 12780.717627 eV Total energy + Delta-G solvation = -2591.331236 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -37.96286 -36.64705 -35.81037 -33.70664 -32.72977 -30.59193 -27.09527 -25.39181 -23.10838 -22.20344 -20.39763 -18.52012 -16.81425 -16.42190 -16.13615 -15.30790 -15.17729 -14.99972 -14.11581 -13.60430 -13.25690 -12.77999 -12.61075 -12.36660 -12.10248 -11.87143 -11.77509 -11.67074 -11.33021 -11.19102 -11.02635 -10.94276 -10.51048 -10.35320 -10.00569 -9.73684 -9.66376 -8.56025 -7.57001 -6.16578 -4.26556 0.28024 2.90024 3.20651 3.29703 3.34431 3.82735 4.15433 4.32146 4.58940 4.78425 4.91457 5.02994 5.16873 5.29916 5.41509 5.57387 5.66418 5.74125 6.06354 6.08260 6.25623 6.36765 6.40782 7.00451 7.35913 7.64106 7.77736 7.95321 8.09160 8.82579 9.42345 10.89097 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.039222 B = 0.007782 C = 0.007744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.720421 B = 3597.051222 C = 3615.062891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.555 4.555 3 H 0.139 0.861 4 C 0.078 3.922 5 N -0.558 5.558 6 C 0.192 3.808 7 C -0.560 4.560 8 H 0.061 0.939 9 C 0.067 3.933 10 N -0.888 5.888 11 Si 0.889 3.111 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.073 3.927 16 C -0.592 4.592 17 S 2.403 3.597 18 O -0.942 6.942 19 O -0.957 6.957 20 H 0.081 0.919 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.093 0.907 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.264 0.736 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.128 0.872 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.639 3.929 -8.943 10.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.666 4.666 3 H 0.157 0.843 4 C -0.051 4.051 5 N -0.282 5.282 6 C 0.068 3.932 7 C -0.599 4.599 8 H 0.079 0.921 9 C -0.136 4.136 10 N -0.526 5.526 11 Si 0.717 3.283 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.057 4.057 16 C -0.723 4.723 17 S 2.588 3.412 18 O -0.939 6.939 19 O -0.954 6.954 20 H 0.100 0.900 21 H 0.085 0.915 22 H 0.091 0.909 23 H 0.076 0.924 24 H 0.111 0.889 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.146 0.854 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.900 4.080 -9.615 11.149 hybrid contribution 0.144 -1.419 1.208 1.870 sum -3.755 2.661 -8.406 9.584 Atomic orbital electron populations 1.21555 0.90441 1.03781 1.03893 1.30011 1.05635 1.13588 1.17380 0.84256 1.21696 0.89470 0.98973 0.95001 1.61803 1.04641 1.52964 1.08770 1.19801 0.96158 0.95286 0.81969 1.21813 1.41405 0.98106 0.98584 0.92113 1.24954 0.94602 0.97799 0.96247 1.69944 1.41537 1.35972 1.05169 0.86572 0.78291 0.84851 0.78600 1.19558 1.20836 1.20837 1.21579 1.02935 0.94637 0.86526 1.30209 1.24048 1.10979 1.07110 1.08451 0.79322 0.76161 0.77315 1.93560 1.77494 1.35999 1.86893 1.93536 1.84992 1.69669 1.47219 0.90045 0.91517 0.90904 0.92372 0.88909 0.94707 0.94134 0.92674 0.88839 0.92372 0.85379 0.84653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.21 37.16 0.34 -1.35 16 2 C -0.55 -7.74 3.22 -26.63 -0.09 -7.83 16 3 H 0.14 1.69 8.14 -51.93 -0.42 1.27 16 4 C 0.08 1.36 4.14 -3.96 -0.02 1.34 16 5 N -0.56 -10.60 4.61 -236.56 -1.09 -11.69 16 6 C 0.19 4.53 5.01 -4.97 -0.02 4.50 16 7 C -0.56 -14.46 7.92 -34.44 -0.27 -14.74 16 8 H 0.06 1.56 6.17 -52.49 -0.32 1.24 16 9 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 11 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.07 1.27 4.77 -3.96 -0.02 1.25 16 16 C -0.59 -8.08 6.58 37.25 0.25 -7.83 16 17 S 2.40 36.10 4.74 -107.50 -0.51 35.59 16 18 O -0.94 -17.15 18.06 -57.81 -1.04 -18.19 16 19 O -0.96 -16.11 18.11 -57.81 -1.05 -17.15 16 20 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 21 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.06 1.09 7.24 -51.93 -0.38 0.72 16 24 H 0.09 1.62 7.85 -51.93 -0.41 1.21 16 25 H 0.03 0.87 8.05 -51.93 -0.42 0.45 16 26 H 0.04 1.02 7.97 -51.93 -0.41 0.60 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.09 1.62 7.91 -51.93 -0.41 1.21 16 29 H 0.06 1.09 6.87 -51.93 -0.36 0.73 16 30 H 0.13 1.46 8.14 -51.93 -0.42 1.03 16 31 H 0.14 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 265.18 15.07 4.00 4.00 Total: -1.00 -31.21 265.18 -8.29 -39.49 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -4.38 Total: -0.64 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 0.07 Total: -22.94 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.35 Total: -35.85 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -2.09 Total: -35.34 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 36.10 SS G_CDS: -0.51 Total: 35.59 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.21 -8.29 -39.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155511548.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.563 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds