Wall clock time and date at job start Mon Mar 30 2020 02:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.60341 * 2 1 4 4 C 1.53188 * 109.60302 * 120.31824 * 2 1 3 5 5 N 1.46470 * 109.90009 * 182.55922 * 4 2 1 6 6 C 1.46902 * 110.99867 * 163.00260 * 5 4 2 7 7 C 1.50703 * 109.47123 * 64.78235 * 6 5 4 8 8 H 1.07993 * 119.99926 * 4.83348 * 7 6 5 9 9 C 1.37879 * 119.99944 * 184.83126 * 7 6 5 10 10 N 1.31513 * 119.99533 * 359.97438 * 9 7 6 11 11 Si 1.86788 * 120.00057 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47262 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47313 * 120.00059 * 11 9 7 14 14 H 1.48504 * 109.47347 * 240.00215 * 11 9 7 15 15 C 1.46473 * 112.46112 * 288.03441 * 5 4 2 16 16 C 1.53182 * 109.89729 * 71.96690 * 15 5 4 17 17 S 1.81814 * 109.73793 * 239.58954 * 2 1 3 18 18 O 1.42100 * 108.70222 * 302.10376 * 17 2 1 19 19 O 1.42103 * 108.70128 * 73.44906 * 17 2 1 20 20 H 1.08998 * 109.46954 * 299.68250 * 1 2 3 21 21 H 1.08998 * 109.46709 * 59.67685 * 1 2 3 22 22 H 1.08996 * 109.46763 * 179.68333 * 1 2 3 23 23 H 1.08998 * 109.39595 * 62.42626 * 4 2 1 24 24 H 1.09001 * 109.32639 * 302.64613 * 4 2 1 25 25 H 1.08995 * 109.46667 * 184.78223 * 6 5 4 26 26 H 1.08996 * 109.46773 * 304.77943 * 6 5 4 27 27 H 0.97009 * 119.99454 * 179.97438 * 10 9 7 28 28 H 1.08997 * 109.39842 * 192.09473 * 15 5 4 29 29 H 1.09002 * 109.40378 * 311.83756 * 15 5 4 30 30 H 1.09002 * 109.60173 * 177.60438 * 16 15 5 31 31 H 1.08997 * 109.73891 * 57.19890 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0439 -0.7285 1.2457 5 7 3.5073 -0.6795 1.2837 6 6 4.0100 -0.9983 2.6267 7 6 3.6635 -2.4249 2.9672 8 1 3.1935 -3.0574 2.2287 9 6 3.9465 -2.9225 4.2215 10 7 4.5193 -2.1523 5.1206 11 14 3.5176 -4.6909 4.6433 12 1 2.8860 -5.3412 3.4671 13 1 4.7544 -5.4260 5.0112 14 1 2.5709 -4.7114 5.7873 15 6 4.1226 -1.5440 0.2740 16 6 3.9255 -0.9397 -1.1197 17 16 2.1440 -0.8663 -1.4759 18 8 1.6246 -2.1889 -1.4770 19 8 1.9370 -0.0362 -2.6105 20 1 -0.3633 0.5089 0.8928 21 1 -0.3633 0.5188 -0.8871 22 1 -0.3633 -1.0276 -0.0057 23 1 1.7171 -1.7679 1.2179 24 1 1.6423 -0.2464 2.1370 25 1 5.0924 -0.8721 2.6488 26 1 3.5513 -0.3293 3.3546 27 1 4.7180 -2.5024 6.0032 28 1 5.1887 -1.6390 0.4799 29 1 3.6589 -2.5297 0.3101 30 1 4.4215 -1.5644 -1.8626 31 1 4.3458 0.0656 -1.1479 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155511548.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:54 Heat of formation + Delta-G solvation = -95.289415 kcal Electronic energy + Delta-G solvation = -15373.099741 eV Core-core repulsion = 12780.717627 eV Total energy + Delta-G solvation = -2592.382114 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.44568 -37.95817 -37.10257 -35.19947 -34.39211 -32.08292 -28.71385 -26.91976 -24.75040 -23.45672 -21.96030 -19.79470 -18.60953 -17.71640 -17.48058 -16.79930 -16.59089 -16.56964 -15.69679 -15.10624 -14.55813 -14.10486 -13.94281 -13.77985 -13.52049 -13.20207 -13.12634 -13.08988 -12.87528 -12.78119 -12.66183 -12.36981 -12.15898 -12.01720 -11.75583 -11.39469 -10.89055 -10.61799 -9.24432 -8.19366 -6.37045 -0.91547 1.35489 1.39358 1.49648 1.72217 2.36647 2.64662 2.84318 3.08091 3.23491 3.56847 3.76612 3.89294 4.15528 4.24024 4.30230 4.56275 4.70730 4.85385 4.88724 4.95778 5.02950 5.15483 5.22046 5.34467 5.71993 5.90524 6.11417 6.33338 6.81773 7.35287 8.84183 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.039222 B = 0.007782 C = 0.007744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.720421 B = 3597.051222 C = 3615.062891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.542 4.542 3 H 0.165 0.835 4 C 0.076 3.924 5 N -0.550 5.550 6 C 0.203 3.797 7 C -0.564 4.564 8 H 0.057 0.943 9 C 0.018 3.982 10 N -0.921 5.921 11 Si 0.949 3.051 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.278 1.278 15 C 0.067 3.933 16 C -0.578 4.578 17 S 2.411 3.589 18 O -0.978 6.978 19 O -0.972 6.972 20 H 0.097 0.903 21 H 0.085 0.915 22 H 0.065 0.935 23 H 0.039 0.961 24 H 0.089 0.911 25 H 0.018 0.982 26 H 0.020 0.980 27 H 0.266 0.734 28 H 0.093 0.907 29 H 0.040 0.960 30 H 0.156 0.844 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.904 4.255 -9.872 11.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.654 4.654 3 H 0.183 0.817 4 C -0.053 4.053 5 N -0.274 5.274 6 C 0.077 3.923 7 C -0.603 4.603 8 H 0.076 0.924 9 C -0.182 4.182 10 N -0.560 5.560 11 Si 0.775 3.225 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.204 1.204 15 C -0.063 4.063 16 C -0.710 4.710 17 S 2.598 3.402 18 O -0.976 6.976 19 O -0.969 6.969 20 H 0.116 0.884 21 H 0.104 0.896 22 H 0.084 0.916 23 H 0.057 0.943 24 H 0.108 0.892 25 H 0.036 0.964 26 H 0.039 0.961 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.058 0.942 30 H 0.174 0.826 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.184 4.402 -10.577 12.197 hybrid contribution 0.239 -1.484 1.486 2.114 sum -3.945 2.918 -9.091 10.331 Atomic orbital electron populations 1.21692 0.89012 1.03997 1.05711 1.29920 1.06931 1.14170 1.14358 0.81689 1.21701 0.88328 0.98492 0.96811 1.61757 1.05687 1.53012 1.06916 1.19483 0.94981 0.93752 0.84087 1.22086 1.40619 0.99164 0.98460 0.92443 1.25698 0.94725 1.01406 0.96391 1.70039 1.42764 1.37628 1.05589 0.85641 0.78113 0.80525 0.78263 1.19440 1.20357 1.20399 1.21619 1.02570 0.93995 0.88087 1.30107 1.22966 1.12963 1.04996 1.08102 0.79701 0.75163 0.77217 1.93516 1.78606 1.37962 1.87472 1.93518 1.85507 1.69676 1.48196 0.88431 0.89570 0.91595 0.94269 0.89245 0.96416 0.96149 0.92522 0.88891 0.94152 0.82611 0.81974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.21 71.98 0.66 -2.59 16 2 C -0.54 -13.98 3.22 30.66 0.10 -13.88 16 3 H 0.17 3.45 8.14 -2.39 -0.02 3.43 16 4 C 0.08 2.59 4.14 86.45 0.36 2.95 16 5 N -0.55 -20.54 4.61 -902.34 -4.16 -24.69 16 6 C 0.20 9.66 5.01 85.56 0.43 10.09 16 7 C -0.56 -29.37 7.92 25.60 0.20 -29.17 16 8 H 0.06 2.98 6.17 -2.91 -0.02 2.96 16 9 C 0.02 0.97 5.46 84.66 0.46 1.43 16 10 N -0.92 -52.08 13.29 21.45 0.28 -51.80 16 11 Si 0.95 42.57 29.54 68.60 2.03 44.59 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 13 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 14 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 15 C 0.07 2.25 4.77 86.45 0.41 2.66 16 16 C -0.58 -14.23 6.58 72.04 0.47 -13.75 16 17 S 2.41 67.81 4.74 -56.49 -0.27 67.54 16 18 O -0.98 -34.84 18.06 -127.39 -2.30 -37.14 16 19 O -0.97 -30.36 18.11 -127.39 -2.31 -32.67 16 20 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 21 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 22 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 23 H 0.04 1.48 7.24 -2.39 -0.02 1.46 16 24 H 0.09 3.08 7.85 -2.39 -0.02 3.06 16 25 H 0.02 0.90 8.05 -2.39 -0.02 0.88 16 26 H 0.02 1.05 7.97 -2.39 -0.02 1.03 16 27 H 0.27 14.21 8.31 -92.70 -0.77 13.44 16 28 H 0.09 3.13 7.91 -2.39 -0.02 3.11 16 29 H 0.04 1.50 6.87 -2.39 -0.02 1.49 16 30 H 0.16 3.03 8.14 -2.39 -0.02 3.01 16 31 H 0.16 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -66.15 265.18 -2.51 -68.66 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.11 Total: 7.76 kcal Atomic # 6 Polarization: -45.37 SS G_CDS: 3.10 Total: -42.27 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -3.87 Total: -76.49 kcal Atomic # 8 Polarization: -65.20 SS G_CDS: -4.61 Total: -69.80 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: 67.81 SS G_CDS: -0.27 Total: 67.54 kcal Total: -66.15 -2.51 -68.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155511548.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.629 kcal (2) G-P(sol) polarization free energy of solvation -66.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds