Wall clock time and date at job start Mon Mar 30 2020 02:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46443 * 126.08080 * 59.71465 * 12 2 1 14 14 C 1.53190 * 113.71126 * 181.59147 * 13 12 2 15 15 H 1.09003 * 109.94285 * 92.00074 * 14 13 12 16 16 C 1.53000 * 110.21555 * 213.52119 * 14 13 12 17 17 C 1.55555 * 106.33477 * 332.83214 * 14 13 12 18 18 S 1.67292 * 126.08416 * 240.02806 * 12 2 1 19 19 O 1.42102 * 105.40556 * 314.73977 * 18 12 2 20 20 O 1.42093 * 105.40505 * 85.00404 * 18 12 2 21 21 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 22 22 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 23 23 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.09004 * 108.65049 * 302.86618 * 13 12 2 26 26 H 1.09000 * 108.64805 * 60.64548 * 13 12 2 27 27 H 1.09006 * 109.47042 * 178.44814 * 16 14 13 28 28 H 1.09004 * 109.47055 * 298.44672 * 16 14 13 29 29 H 1.09001 * 109.47686 * 58.44476 * 16 14 13 30 30 H 1.09006 * 111.36529 * 279.19584 * 17 14 13 31 31 H 1.08997 * 111.37301 * 154.39941 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.7431 -2.0817 1.5618 14 6 2.3659 -2.5027 2.8966 15 1 1.6543 -2.3409 3.7063 16 6 2.7787 -3.9750 2.8463 17 6 3.6186 -1.6028 3.0980 18 16 2.9836 -0.0282 2.3913 19 8 4.0039 0.6815 1.7024 20 8 2.0877 0.6187 3.2847 21 1 -0.3633 0.5138 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.9028 -0.5285 -4.4375 25 1 0.6634 -2.2198 1.6195 26 1 2.1323 -2.7315 0.7780 27 1 3.2449 -4.2541 3.7913 28 1 1.8972 -4.5941 2.6793 29 1 3.4882 -4.1260 2.0327 30 1 4.4715 -1.9768 2.5316 31 1 3.8636 -1.4937 4.1545 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224948266.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:09 Heat of formation + Delta-G solvation = -60.070790 kcal Electronic energy + Delta-G solvation = -15530.093638 eV Core-core repulsion = 12939.238718 eV Total energy + Delta-G solvation = -2590.854920 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -37.61877 -36.53221 -35.43455 -34.76566 -32.15133 -29.76783 -27.68986 -25.48672 -24.92315 -21.06199 -20.61991 -18.31923 -16.86685 -16.63680 -16.11878 -15.32080 -14.95985 -14.73848 -13.88044 -13.26089 -13.15905 -12.81258 -12.76765 -12.34655 -12.16994 -12.00232 -11.61895 -11.49357 -11.38197 -11.27749 -11.03345 -10.69366 -10.45100 -10.19481 -10.08561 -9.52814 -9.36395 -8.61809 -7.95668 -6.12289 -4.12068 0.67101 3.07933 3.24473 3.37011 3.37644 3.99280 4.16997 4.35731 4.44288 4.79354 5.05815 5.16403 5.25405 5.39254 5.60764 5.62722 5.79534 5.99592 6.03607 6.20923 6.23823 6.37450 6.48860 6.55411 6.83020 7.31036 7.43718 7.68221 8.48808 8.91192 9.48279 11.00734 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.032323 B = 0.010157 C = 0.009139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.059505 B = 2756.112385 C = 3062.894471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.278 3.722 3 H 0.047 0.953 4 C -0.522 4.522 5 H 0.082 0.918 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.881 3.119 9 H -0.276 1.276 10 H -0.265 1.265 11 H -0.293 1.293 12 N -0.959 5.959 13 C 0.087 3.913 14 C -0.095 4.095 15 H 0.096 0.904 16 C -0.133 4.133 17 C -0.594 4.594 18 S 2.558 3.442 19 O -0.957 6.957 20 O -0.968 6.968 21 H 0.037 0.963 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.265 0.735 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.140 0.860 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 -4.413 12.797 13.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.175 3.825 3 H 0.064 0.936 4 C -0.561 4.561 5 H 0.100 0.900 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.711 3.289 9 H -0.203 1.203 10 H -0.190 1.190 11 H -0.221 1.221 12 N -0.801 5.801 13 C -0.040 4.040 14 C -0.115 4.115 15 H 0.114 0.886 16 C -0.191 4.191 17 C -0.724 4.724 18 S 2.655 3.345 19 O -0.947 6.947 20 O -0.957 6.957 21 H 0.056 0.944 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.158 0.842 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.032 -3.345 12.744 13.176 hybrid contribution -0.576 -0.006 -0.285 0.642 sum -0.544 -3.351 12.459 12.913 Atomic orbital electron populations 1.22488 0.99036 1.01466 0.99256 1.18757 0.89952 0.92029 0.81791 0.93567 1.21213 1.32316 1.14321 0.88278 0.89995 1.24898 0.95751 0.96589 0.95724 1.69872 1.45295 1.40197 0.97930 0.86970 0.80630 0.83861 0.77467 1.20292 1.19031 1.22057 1.56880 1.67809 1.18628 1.36804 1.21452 1.01544 0.85757 0.95242 1.21960 0.94067 0.97377 0.98093 0.88612 1.21697 1.02007 0.92969 1.02444 1.30892 1.07345 1.21765 1.12397 1.06661 0.75881 0.76345 0.75653 1.93591 1.59190 1.70864 1.71024 1.93594 1.63102 1.72329 1.66695 0.94351 0.93262 0.92284 0.92477 0.91029 0.90268 0.92049 0.91664 0.91583 0.84196 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 8.70 37.16 0.32 -3.22 16 2 C 0.28 6.65 2.56 -69.08 -0.18 6.48 16 3 H 0.05 1.17 7.15 -51.93 -0.37 0.80 16 4 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 5 H 0.08 2.40 7.65 -52.49 -0.40 1.99 16 6 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 7 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 8 Si 0.88 21.69 24.37 -169.99 -4.14 17.55 16 9 H -0.28 -6.50 6.87 56.52 0.39 -6.12 16 10 H -0.27 -6.34 6.53 56.52 0.37 -5.97 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 N -0.96 -19.23 3.13 -108.46 -0.34 -19.57 16 13 C 0.09 1.38 5.86 -3.97 -0.02 1.36 16 14 C -0.09 -1.12 3.29 -89.16 -0.29 -1.41 16 15 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 16 C -0.13 -1.28 9.06 37.16 0.34 -0.94 16 17 C -0.59 -7.17 7.05 38.52 0.27 -6.89 16 18 S 2.56 46.02 6.16 -107.50 -0.66 45.36 16 19 O -0.96 -21.04 18.04 -57.37 -1.03 -22.07 16 20 O -0.97 -19.14 18.14 -57.37 -1.04 -20.18 16 21 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 22 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 23 H 0.06 1.20 7.58 -51.93 -0.39 0.80 16 24 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.07 1.07 7.59 -51.93 -0.39 0.68 16 26 H 0.08 1.32 7.27 -51.93 -0.38 0.94 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 30 H 0.14 1.57 8.08 -51.93 -0.42 1.15 16 31 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 261.08 15.07 3.93 3.93 Total: -1.00 -34.05 261.08 -6.73 -40.78 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.24 Total: -2.38 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 0.03 Total: -17.32 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.43 Total: -45.66 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -2.08 Total: -42.26 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.14 Total: 17.55 kcal Atomic # 16 Polarization: 46.02 SS G_CDS: -0.66 Total: 45.36 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -34.05 -6.73 -40.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224948266.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.290 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds