Wall clock time and date at job start Mon Mar 30 2020 02:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46443 * 126.08080 * 59.71465 * 12 2 1 14 14 C 1.53190 * 113.71126 * 181.59147 * 13 12 2 15 15 H 1.09003 * 109.94285 * 92.00074 * 14 13 12 16 16 C 1.53000 * 110.21555 * 213.52119 * 14 13 12 17 17 C 1.55555 * 106.33477 * 332.83214 * 14 13 12 18 18 S 1.67292 * 126.08416 * 240.02806 * 12 2 1 19 19 O 1.42102 * 105.40556 * 314.73977 * 18 12 2 20 20 O 1.42093 * 105.40505 * 85.00404 * 18 12 2 21 21 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 22 22 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 23 23 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.09004 * 108.65049 * 302.86618 * 13 12 2 26 26 H 1.09000 * 108.64805 * 60.64548 * 13 12 2 27 27 H 1.09006 * 109.47042 * 178.44814 * 16 14 13 28 28 H 1.09004 * 109.47055 * 298.44672 * 16 14 13 29 29 H 1.09001 * 109.47686 * 58.44476 * 16 14 13 30 30 H 1.09006 * 111.36529 * 279.19584 * 17 14 13 31 31 H 1.08997 * 111.37301 * 154.39941 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.7431 -2.0817 1.5618 14 6 2.3659 -2.5027 2.8966 15 1 1.6543 -2.3409 3.7063 16 6 2.7787 -3.9750 2.8463 17 6 3.6186 -1.6028 3.0980 18 16 2.9836 -0.0282 2.3913 19 8 4.0039 0.6815 1.7024 20 8 2.0877 0.6187 3.2847 21 1 -0.3633 0.5138 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.9028 -0.5285 -4.4375 25 1 0.6634 -2.2198 1.6195 26 1 2.1323 -2.7315 0.7780 27 1 3.2449 -4.2541 3.7913 28 1 1.8972 -4.5941 2.6793 29 1 3.4882 -4.1260 2.0327 30 1 4.4715 -1.9768 2.5316 31 1 3.8636 -1.4937 4.1545 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224948266.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:07 Heat of formation + Delta-G solvation = -87.564122 kcal Electronic energy + Delta-G solvation = -15531.285838 eV Core-core repulsion = 12939.238718 eV Total energy + Delta-G solvation = -2592.047120 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -38.93077 -38.03766 -36.94803 -36.31374 -34.10992 -31.38166 -28.66809 -27.19008 -26.54182 -22.71192 -21.81820 -19.80069 -18.71524 -18.24364 -17.55958 -16.78020 -16.69747 -15.94244 -15.49616 -14.97751 -14.42349 -14.36579 -14.09558 -13.79063 -13.58466 -13.32524 -13.15654 -13.01234 -12.95538 -12.63436 -12.53911 -12.03688 -11.95503 -11.75827 -11.50720 -11.43416 -11.18108 -10.75524 -9.55804 -8.31788 -6.35189 -0.66537 1.27562 1.35665 1.43439 1.65299 2.29121 2.71668 2.96779 3.06336 3.36524 3.65364 3.98858 4.15224 4.39230 4.46478 4.53115 4.63222 4.68887 4.78237 4.82161 5.00456 5.13310 5.13884 5.25511 5.43314 5.49429 5.53815 5.93217 6.34989 6.68034 7.29109 8.84528 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.032323 B = 0.010157 C = 0.009139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.059505 B = 2756.112385 C = 3062.894471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.275 3.725 3 H 0.026 0.974 4 C -0.521 4.521 5 H 0.049 0.951 6 C 0.018 3.982 7 N -0.940 5.940 8 Si 0.934 3.066 9 H -0.254 1.254 10 H -0.258 1.258 11 H -0.294 1.294 12 N -0.975 5.975 13 C 0.077 3.923 14 C -0.088 4.088 15 H 0.123 0.877 16 C -0.132 4.132 17 C -0.546 4.546 18 S 2.536 3.464 19 O -1.012 7.012 20 O -0.992 6.992 21 H 0.059 0.941 22 H 0.042 0.958 23 H 0.068 0.932 24 H 0.267 0.733 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.155 0.845 31 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.806 -5.415 15.252 16.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.170 3.830 3 H 0.043 0.957 4 C -0.560 4.560 5 H 0.067 0.933 6 C -0.180 4.180 7 N -0.580 5.580 8 Si 0.761 3.239 9 H -0.179 1.179 10 H -0.182 1.182 11 H -0.222 1.222 12 N -0.816 5.816 13 C -0.049 4.049 14 C -0.108 4.108 15 H 0.141 0.859 16 C -0.190 4.190 17 C -0.681 4.681 18 S 2.639 3.361 19 O -1.002 7.002 20 O -0.982 6.982 21 H 0.078 0.922 22 H 0.061 0.939 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.173 0.827 31 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.694 -4.312 15.199 15.814 hybrid contribution -0.263 0.158 -0.963 1.011 sum -0.957 -4.153 14.236 14.860 Atomic orbital electron populations 1.22373 0.96975 1.02404 0.99922 1.18468 0.91570 0.90925 0.82024 0.95661 1.21454 1.31257 1.13230 0.90076 0.93253 1.25691 0.97301 0.99587 0.95446 1.70004 1.47298 1.42204 0.98528 0.86085 0.80018 0.80374 0.77413 1.17922 1.18233 1.22174 1.56786 1.68448 1.20536 1.35847 1.21781 1.02651 0.83235 0.97224 1.22110 0.93984 0.98546 0.96190 0.85921 1.21742 1.02546 0.91012 1.03689 1.30700 1.07725 1.14980 1.14739 1.07126 0.75095 0.78570 0.75274 1.93522 1.60106 1.73925 1.72626 1.93551 1.63816 1.74599 1.66217 0.92234 0.93914 0.91252 0.92362 0.90167 0.92030 0.89203 0.90648 0.92463 0.82717 0.80321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.66 8.70 71.98 0.63 -6.04 16 2 C 0.27 13.31 2.56 44.24 0.11 13.42 16 3 H 0.03 1.33 7.15 -2.38 -0.02 1.31 16 4 C -0.52 -29.53 9.11 25.60 0.23 -29.29 16 5 H 0.05 3.03 7.65 -2.91 -0.02 3.01 16 6 C 0.02 1.06 5.45 84.66 0.46 1.52 16 7 N -0.94 -58.13 13.96 21.45 0.30 -57.83 16 8 Si 0.93 44.96 24.37 68.60 1.67 46.63 16 9 H -0.25 -11.24 6.87 99.48 0.68 -10.55 16 10 H -0.26 -11.98 6.53 99.48 0.65 -11.33 16 11 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 12 N -0.98 -38.89 3.13 -497.06 -1.55 -40.45 16 13 C 0.08 2.33 5.86 86.45 0.51 2.84 16 14 C -0.09 -1.72 3.29 -9.85 -0.03 -1.75 16 15 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 16 C -0.13 -1.94 9.06 71.98 0.65 -1.28 16 17 C -0.55 -10.90 7.05 72.86 0.51 -10.38 16 18 S 2.54 89.28 6.16 -56.49 -0.35 88.93 16 19 O -1.01 -45.57 18.04 -127.81 -2.31 -47.88 16 20 O -0.99 -38.23 18.14 -127.81 -2.32 -40.55 16 21 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 22 H 0.04 1.84 3.27 -2.39 -0.01 1.83 16 23 H 0.07 2.72 7.58 -2.39 -0.02 2.71 16 24 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 25 H 0.08 2.25 7.59 -2.38 -0.02 2.23 16 26 H 0.06 2.05 7.27 -2.39 -0.02 2.03 16 27 H 0.09 0.88 8.14 -2.38 -0.02 0.87 16 28 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 30 H 0.15 2.84 8.08 -2.38 -0.02 2.82 16 31 H 0.18 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -77.41 261.08 -0.45 -77.85 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 1.03 Total: 4.26 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 3.07 Total: -30.97 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -1.25 Total: -98.28 kcal Atomic # 8 Polarization: -83.80 SS G_CDS: -4.62 Total: -88.43 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.67 Total: 46.63 kcal Atomic # 16 Polarization: 89.28 SS G_CDS: -0.35 Total: 88.93 kcal Total: -77.41 -0.45 -77.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224948266.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.711 kcal (2) G-P(sol) polarization free energy of solvation -77.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds