Wall clock time and date at job start Mon Mar 30 2020 02:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47153 * 2 1 4 4 C 1.50694 * 109.47024 * 119.99540 * 2 1 3 5 5 H 1.08001 * 119.99942 * 120.00578 * 4 2 1 6 6 C 1.37874 * 120.00579 * 299.99965 * 4 2 1 7 7 N 1.31514 * 119.99583 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00423 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47268 * 270.00265 * 8 6 4 10 10 H 1.48501 * 109.46875 * 30.00655 * 8 6 4 11 11 H 1.48504 * 109.47064 * 150.00584 * 8 6 4 12 12 C 1.52997 * 109.47448 * 239.99866 * 2 1 3 13 13 H 1.09005 * 112.96720 * 282.97228 * 12 2 1 14 14 C 1.53948 * 113.76838 * 54.64665 * 12 2 1 15 15 C 1.53954 * 86.28932 * 137.91005 * 14 12 2 16 16 N 1.47582 * 86.11828 * 336.39538 * 15 14 12 17 17 S 1.65590 * 134.49567 * 204.64490 * 16 15 14 18 18 C 1.81409 * 104.44656 * 269.99476 * 17 16 15 19 19 O 1.42094 * 104.27812 * 26.06358 * 17 16 15 20 20 O 1.42095 * 104.28384 * 153.92363 * 17 16 15 21 21 H 1.08997 * 109.47332 * 305.14099 * 1 2 3 22 22 H 1.09004 * 109.46952 * 65.14085 * 1 2 3 23 23 H 1.09000 * 109.46785 * 185.13354 * 1 2 3 24 24 H 0.96998 * 120.00287 * 179.97438 * 7 6 4 25 25 H 1.09001 * 113.74249 * 252.25375 * 14 12 2 26 26 H 1.08996 * 113.74103 * 23.46585 * 14 12 2 27 27 H 1.09001 * 113.76867 * 90.69720 * 15 14 12 28 28 H 1.08997 * 113.77068 * 222.09136 * 15 14 12 29 29 H 1.08999 * 109.46685 * 59.99899 * 18 17 16 30 30 H 1.09003 * 109.46661 * 179.97438 * 18 17 16 31 31 H 1.08992 * 109.47062 * 299.99734 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1314 6 6 1.6993 -0.2392 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3213 -1.1201 4.0080 9 1 1.3427 -2.1615 4.4119 10 1 3.6293 -1.7580 3.7123 11 1 2.4864 -0.1411 5.1123 12 6 2.0401 -0.7212 -1.2492 13 1 1.9694 -1.8063 -1.1725 14 6 1.4783 -0.1545 -2.5657 15 6 2.9050 -0.3073 -3.1237 16 7 3.3537 -0.2400 -1.7193 17 16 4.7642 0.1991 -0.9714 18 6 5.7205 -1.3391 -0.8698 19 8 5.3743 1.1065 -1.8788 20 8 4.3581 0.6201 0.3236 21 1 -0.3634 0.5915 0.8403 22 1 -0.3633 0.4320 -0.9325 23 1 -0.3633 -1.0236 0.0920 24 1 0.7081 1.1610 3.4843 25 1 0.7471 -0.8043 -3.0466 26 1 1.1433 0.8799 -2.4906 27 1 3.0903 -1.2708 -3.5984 28 1 3.2323 0.5371 -3.7303 29 1 5.8954 -1.7251 -1.8740 30 1 6.6767 -1.1411 -0.3853 31 1 5.1643 -2.0751 -0.2894 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260404107.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:26 Heat of formation + Delta-G solvation = -34.129193 kcal Electronic energy + Delta-G solvation = -15640.209293 eV Core-core repulsion = 13050.479285 eV Total energy + Delta-G solvation = -2589.730008 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.76724 -36.35376 -35.14009 -33.61084 -30.41781 -29.11126 -27.84996 -25.08016 -24.67745 -21.01727 -19.82676 -17.93717 -16.89923 -16.12355 -15.58158 -15.39948 -14.76207 -13.99186 -13.65286 -13.24947 -12.80673 -12.76724 -12.62280 -11.84118 -11.54822 -11.35705 -11.26971 -11.15535 -11.01854 -10.73354 -10.51214 -10.42604 -10.32697 -10.14330 -9.75171 -9.15918 -8.69665 -8.33853 -8.14093 -5.80094 -3.81566 0.88483 3.18813 3.40459 3.47544 3.49793 4.50120 4.59306 4.65202 4.97541 5.12946 5.25546 5.42341 5.53585 5.56133 5.74297 5.94966 6.06709 6.23606 6.45462 6.54809 6.76523 6.92889 7.11652 7.21601 7.39425 7.85814 8.14139 8.22152 8.54288 9.13207 9.80045 11.28086 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.026706 B = 0.012075 C = 0.009429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.203273 B = 2318.282302 C = 2968.799929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.036 3.964 3 H 0.043 0.957 4 C -0.488 4.488 5 H 0.046 0.954 6 C 0.068 3.932 7 N -0.892 5.892 8 Si 0.885 3.115 9 H -0.285 1.285 10 H -0.277 1.277 11 H -0.288 1.288 12 C 0.169 3.831 13 H 0.078 0.922 14 C -0.145 4.145 15 C 0.118 3.882 16 N -1.024 6.024 17 S 2.613 3.387 18 C -0.685 4.685 19 O -0.979 6.979 20 O -0.897 6.897 21 H 0.082 0.918 22 H 0.010 0.990 23 H 0.027 0.973 24 H 0.256 0.744 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.912 -4.766 -9.933 11.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.017 3.983 3 H 0.061 0.939 4 C -0.526 4.526 5 H 0.064 0.936 6 C -0.133 4.133 7 N -0.532 5.532 8 Si 0.714 3.286 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.214 1.214 12 C 0.064 3.936 13 H 0.096 0.904 14 C -0.185 4.185 15 C -0.008 4.008 16 N -0.863 5.863 17 S 2.705 3.295 18 C -0.832 4.832 19 O -0.970 6.970 20 O -0.887 6.887 21 H 0.100 0.900 22 H 0.029 0.971 23 H 0.046 0.954 24 H 0.066 0.934 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.319 -3.756 -9.379 10.988 hybrid contribution 0.737 -1.373 0.844 1.772 sum 5.056 -5.129 -8.536 11.168 Atomic orbital electron populations 1.21738 0.97930 0.99808 0.99478 1.18955 0.92719 0.96831 0.89839 0.93942 1.20823 1.30071 1.11231 0.90485 0.93584 1.24783 0.95081 0.94810 0.98590 1.69865 1.37444 1.23005 1.22848 0.86720 0.79030 0.79276 0.83573 1.21170 1.20187 1.21408 1.22756 0.76926 0.97969 0.95923 0.90425 1.23607 0.94858 1.02639 0.97357 1.22618 0.94035 1.00634 0.83512 1.60471 1.26778 1.82672 1.16414 1.04979 0.73398 0.76344 0.74759 1.30730 1.15843 1.26608 1.09999 1.93524 1.77566 1.59679 1.66218 1.93821 1.78443 1.78413 1.38057 0.89962 0.97106 0.95396 0.93374 0.91115 0.89246 0.91063 0.90594 0.86838 0.86562 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.73 37.16 0.32 -2.69 16 2 C 0.04 0.87 1.58 -91.78 -0.14 0.72 16 3 H 0.04 1.18 7.63 -51.93 -0.40 0.79 16 4 C -0.49 -13.20 6.92 -34.44 -0.24 -13.44 16 5 H 0.05 1.20 7.74 -52.49 -0.41 0.80 16 6 C 0.07 1.93 5.30 -17.82 -0.09 1.83 16 7 N -0.89 -26.31 11.38 55.43 0.63 -25.68 16 8 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 12 C 0.17 3.19 3.76 -66.86 -0.25 2.94 16 13 H 0.08 1.38 8.12 -51.93 -0.42 0.95 16 14 C -0.14 -2.17 6.72 -25.80 -0.17 -2.35 16 15 C 0.12 1.62 8.91 -2.97 -0.03 1.59 16 16 N -1.02 -18.02 3.87 -112.01 -0.43 -18.45 16 17 S 2.61 48.09 6.57 -107.50 -0.71 47.38 16 18 C -0.68 -9.47 10.99 101.05 1.11 -8.36 16 19 O -0.98 -19.62 18.02 -57.54 -1.04 -20.66 16 20 O -0.90 -21.31 15.01 -57.54 -0.86 -22.17 16 21 H 0.08 2.15 6.22 -51.93 -0.32 1.82 16 22 H 0.01 0.20 6.92 -51.93 -0.36 -0.16 16 23 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.94 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.09 1.42 7.79 -51.93 -0.40 1.02 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.11 1.29 8.14 -51.92 -0.42 0.87 16 30 H 0.12 1.42 8.14 -51.92 -0.42 1.00 16 31 H 0.13 1.77 8.14 -51.93 -0.42 1.34 16 LS Contribution 268.32 15.07 4.04 4.04 Total: -1.00 -33.78 268.32 -7.28 -41.07 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -4.40 Total: -2.88 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: 0.51 Total: -19.75 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.20 Total: -44.13 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -1.90 Total: -42.83 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 48.09 SS G_CDS: -0.71 Total: 47.38 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.78 -7.28 -41.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404107.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.937 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds