Wall clock time and date at job start Mon Mar 30 2020 02:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47153 * 2 1 4 4 C 1.50694 * 109.47024 * 119.99540 * 2 1 3 5 5 H 1.08001 * 119.99942 * 120.00578 * 4 2 1 6 6 C 1.37874 * 120.00579 * 299.99965 * 4 2 1 7 7 N 1.31514 * 119.99583 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00423 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47268 * 270.00265 * 8 6 4 10 10 H 1.48501 * 109.46875 * 30.00655 * 8 6 4 11 11 H 1.48504 * 109.47064 * 150.00584 * 8 6 4 12 12 C 1.52997 * 109.47448 * 239.99866 * 2 1 3 13 13 H 1.09005 * 112.96720 * 282.97228 * 12 2 1 14 14 C 1.53948 * 113.76838 * 54.64665 * 12 2 1 15 15 C 1.53954 * 86.28932 * 137.91005 * 14 12 2 16 16 N 1.47582 * 86.11828 * 336.39538 * 15 14 12 17 17 S 1.65590 * 134.49567 * 204.64490 * 16 15 14 18 18 C 1.81409 * 104.44656 * 269.99476 * 17 16 15 19 19 O 1.42094 * 104.27812 * 26.06358 * 17 16 15 20 20 O 1.42095 * 104.28384 * 153.92363 * 17 16 15 21 21 H 1.08997 * 109.47332 * 305.14099 * 1 2 3 22 22 H 1.09004 * 109.46952 * 65.14085 * 1 2 3 23 23 H 1.09000 * 109.46785 * 185.13354 * 1 2 3 24 24 H 0.96998 * 120.00287 * 179.97438 * 7 6 4 25 25 H 1.09001 * 113.74249 * 252.25375 * 14 12 2 26 26 H 1.08996 * 113.74103 * 23.46585 * 14 12 2 27 27 H 1.09001 * 113.76867 * 90.69720 * 15 14 12 28 28 H 1.08997 * 113.77068 * 222.09136 * 15 14 12 29 29 H 1.08999 * 109.46685 * 59.99899 * 18 17 16 30 30 H 1.09003 * 109.46661 * 179.97438 * 18 17 16 31 31 H 1.08992 * 109.47062 * 299.99734 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1314 6 6 1.6993 -0.2392 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3213 -1.1201 4.0080 9 1 1.3427 -2.1615 4.4119 10 1 3.6293 -1.7580 3.7123 11 1 2.4864 -0.1411 5.1123 12 6 2.0401 -0.7212 -1.2492 13 1 1.9694 -1.8063 -1.1725 14 6 1.4783 -0.1545 -2.5657 15 6 2.9050 -0.3073 -3.1237 16 7 3.3537 -0.2400 -1.7193 17 16 4.7642 0.1991 -0.9714 18 6 5.7205 -1.3391 -0.8698 19 8 5.3743 1.1065 -1.8788 20 8 4.3581 0.6201 0.3236 21 1 -0.3634 0.5915 0.8403 22 1 -0.3633 0.4320 -0.9325 23 1 -0.3633 -1.0236 0.0920 24 1 0.7081 1.1610 3.4843 25 1 0.7471 -0.8043 -3.0466 26 1 1.1433 0.8799 -2.4906 27 1 3.0903 -1.2708 -3.5984 28 1 3.2323 0.5371 -3.7303 29 1 5.8954 -1.7251 -1.8740 30 1 6.6767 -1.1411 -0.3853 31 1 5.1643 -2.0751 -0.2894 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260404107.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:26 Heat of formation + Delta-G solvation = -59.957836 kcal Electronic energy + Delta-G solvation = -15641.329307 eV Core-core repulsion = 13050.479285 eV Total energy + Delta-G solvation = -2590.850022 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.11216 -37.88960 -36.71380 -35.54930 -32.35964 -30.28904 -29.14455 -26.98421 -26.27723 -22.47995 -21.41403 -19.37870 -18.46052 -17.95601 -17.09012 -16.84194 -16.57412 -15.55724 -15.07899 -14.63305 -14.44600 -13.95452 -13.89302 -13.55317 -13.22002 -12.94341 -12.92660 -12.75227 -12.72143 -12.46977 -12.25544 -12.08168 -11.96932 -11.85266 -11.29516 -10.91032 -10.60291 -10.26815 -9.66472 -7.92899 -5.98770 -0.48680 1.40552 1.44129 1.51011 1.84873 2.53269 3.16026 3.32979 3.40678 3.84053 3.95204 4.14462 4.18609 4.41676 4.70067 4.75572 4.88431 4.91257 5.06152 5.15231 5.20399 5.30131 5.49319 5.58066 5.72188 5.82554 6.21945 6.27281 6.48872 7.07288 7.65105 9.14144 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.026706 B = 0.012075 C = 0.009429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.203273 B = 2318.282302 C = 2968.799929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.031 3.969 3 H -0.006 1.006 4 C -0.485 4.485 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.927 5.927 8 Si 0.936 3.064 9 H -0.271 1.271 10 H -0.269 1.269 11 H -0.296 1.296 12 C 0.163 3.837 13 H 0.098 0.902 14 C -0.136 4.136 15 C 0.125 3.875 16 N -1.037 6.037 17 S 2.608 3.392 18 C -0.657 4.657 19 O -1.006 7.006 20 O -0.967 6.967 21 H 0.044 0.956 22 H 0.040 0.960 23 H 0.036 0.964 24 H 0.251 0.749 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.115 0.885 28 H 0.080 0.920 29 H 0.149 0.851 30 H 0.136 0.864 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.673 -7.346 -11.863 14.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.012 3.988 3 H 0.012 0.988 4 C -0.524 4.524 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.568 5.568 8 Si 0.763 3.237 9 H -0.197 1.197 10 H -0.194 1.194 11 H -0.223 1.223 12 C 0.058 3.942 13 H 0.115 0.885 14 C -0.176 4.176 15 C 0.000 4.000 16 N -0.877 5.877 17 S 2.707 3.293 18 C -0.809 4.809 19 O -0.997 6.997 20 O -0.958 6.958 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.125 0.875 26 H 0.091 0.909 27 H 0.133 0.867 28 H 0.098 0.902 29 H 0.168 0.832 30 H 0.155 0.845 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.058 -6.308 -11.334 13.922 hybrid contribution 0.561 -0.597 1.374 1.600 sum 5.619 -6.905 -9.960 13.359 Atomic orbital electron populations 1.21558 0.97254 0.99771 0.99438 1.18885 0.93383 0.94572 0.91975 0.98825 1.21272 1.28687 1.10882 0.91528 0.93032 1.25571 0.95890 0.95760 1.01638 1.70033 1.39245 1.24702 1.22859 0.85904 0.79066 0.78408 0.80344 1.19683 1.19398 1.22263 1.22639 0.78201 0.98399 0.94964 0.88464 1.23558 0.96777 1.02154 0.95154 1.22921 0.92153 1.03172 0.81708 1.60318 1.26059 1.83043 1.18269 1.04610 0.73819 0.77807 0.73103 1.30415 1.15406 1.22340 1.12759 1.93479 1.77913 1.62195 1.66123 1.93745 1.80027 1.80955 1.41077 0.93730 0.94132 0.94509 0.93958 0.87475 0.90941 0.86704 0.90193 0.83242 0.84544 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.73 71.98 0.63 -5.00 16 2 C 0.03 1.53 1.58 -11.54 -0.02 1.51 16 3 H -0.01 -0.38 7.63 -2.39 -0.02 -0.39 16 4 C -0.49 -26.49 6.92 25.60 0.18 -26.31 16 5 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 6 C 0.01 0.46 5.30 84.65 0.45 0.90 16 7 N -0.93 -56.92 11.38 21.45 0.24 -56.68 16 8 Si 0.94 45.86 29.54 68.60 2.03 47.88 16 9 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 12 C 0.16 5.84 3.76 45.09 0.17 6.01 16 13 H 0.10 3.11 8.12 -2.38 -0.02 3.09 16 14 C -0.14 -3.68 6.72 31.26 0.21 -3.47 16 15 C 0.12 2.95 8.91 86.48 0.77 3.72 16 16 N -1.04 -34.49 3.87 -508.29 -1.97 -36.45 16 17 S 2.61 94.02 6.57 -56.49 -0.37 93.65 16 18 C -0.66 -15.67 10.99 113.37 1.25 -14.42 16 19 O -1.01 -39.85 18.02 -127.65 -2.30 -42.15 16 20 O -0.97 -47.44 15.01 -127.65 -1.92 -49.35 16 21 H 0.04 2.39 6.22 -2.39 -0.01 2.37 16 22 H 0.04 1.57 6.92 -2.39 -0.02 1.55 16 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 25 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.07 2.20 7.79 -2.39 -0.02 2.18 16 27 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.15 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.13 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -77.19 268.32 0.45 -76.73 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: 1.10 Total: 3.42 kcal Atomic # 6 Polarization: -40.69 SS G_CDS: 3.63 Total: -37.06 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -1.72 Total: -93.13 kcal Atomic # 8 Polarization: -87.28 SS G_CDS: -4.22 Total: -91.50 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Atomic # 16 Polarization: 94.02 SS G_CDS: -0.37 Total: 93.65 kcal Total: -77.19 0.45 -76.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404107.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.777 kcal (2) G-P(sol) polarization free energy of solvation -77.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds