Wall clock time and date at job start Mon Mar 30 2020 03:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.39176 * 111.00067 * 2 1 4 4 C 1.55034 * 110.28102 * 193.15439 * 3 2 1 5 5 S 1.79469 * 109.76590 * 287.46480 * 4 3 2 6 6 O 1.42096 * 108.00429 * 203.74149 * 5 4 3 7 7 O 1.42104 * 108.00065 * 333.28488 * 5 4 3 8 8 C 1.82314 * 105.44509 * 88.46856 * 5 4 3 9 9 C 1.54473 * 110.35134 * 319.41681 * 8 5 4 10 10 C 1.47008 * 110.99765 * 132.09673 * 2 1 3 11 11 H 1.09003 * 110.43750 * 254.14535 * 10 2 1 12 12 C 1.50704 * 110.43881 * 16.51624 * 10 2 1 13 13 H 1.07998 * 119.99296 * 59.72496 * 12 10 2 14 14 C 1.37873 * 120.00344 * 239.73316 * 12 10 2 15 15 N 1.31519 * 119.99783 * 6.21673 * 14 12 10 16 16 Si 1.86801 * 120.00024 * 186.21830 * 14 12 10 17 17 H 1.48496 * 109.46890 * 59.99857 * 16 14 12 18 18 H 1.48500 * 109.46873 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46707 * 299.99758 * 16 14 12 20 20 H 1.09003 * 109.46839 * 282.69870 * 1 2 3 21 21 H 1.09003 * 109.46876 * 42.69447 * 1 2 3 22 22 H 1.08997 * 109.47271 * 162.70223 * 1 2 3 23 23 H 1.08992 * 109.33609 * 313.40518 * 3 2 1 24 24 H 1.09004 * 109.33231 * 73.07267 * 3 2 1 25 25 H 1.09004 * 109.42483 * 47.55748 * 4 3 2 26 26 H 1.09007 * 109.42234 * 167.37334 * 4 3 2 27 27 H 1.08995 * 109.32470 * 79.68143 * 8 5 4 28 28 H 1.08999 * 109.32589 * 199.33007 * 8 5 4 29 29 H 1.09002 * 109.56800 * 201.23647 * 9 8 5 30 30 H 1.09000 * 109.56688 * 80.87055 * 9 8 5 31 31 H 0.96997 * 119.99786 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9678 1.2993 0.0000 4 6 3.4824 1.2935 -0.3309 5 16 4.4069 0.6547 1.0683 6 8 5.7340 1.1556 0.9835 7 8 3.6544 0.9115 2.2461 8 6 4.4697 -1.1511 0.8251 9 6 3.1095 -1.6714 0.3100 10 6 1.9958 -0.9201 1.0184 11 1 2.3927 -0.3622 1.8666 12 6 0.9204 -1.8726 1.4738 13 1 0.4438 -2.5294 0.7612 14 6 0.5449 -1.9053 2.8000 15 7 1.0352 -1.0241 3.6442 16 14 -0.6602 -3.2014 3.3978 17 1 -0.0964 -4.5528 3.1510 18 1 -0.8979 -3.0228 4.8527 19 1 -1.9439 -3.0592 2.6649 20 1 -0.3633 0.2259 1.0026 21 1 -0.3633 0.7553 -0.6969 22 1 -0.3633 -0.9811 -0.3056 23 1 1.4374 1.8895 -0.7472 24 1 1.8175 1.7435 0.9840 25 1 3.6608 0.6626 -1.2018 26 1 3.8099 2.3103 -0.5480 27 1 5.2460 -1.3904 0.0984 28 1 4.7021 -1.6350 1.7738 29 1 3.0227 -2.7373 0.5211 30 1 3.0375 -1.5031 -0.7645 31 1 0.7713 -1.0473 4.5773 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260511862.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:32 Heat of formation + Delta-G solvation = -44.962212 kcal Electronic energy + Delta-G solvation = -15974.833468 eV Core-core repulsion = 13384.633706 eV Total energy + Delta-G solvation = -2590.199763 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.23912 -36.15427 -35.38286 -33.31478 -32.18370 -30.49388 -26.98982 -25.08466 -23.49251 -21.86464 -19.53086 -18.03308 -16.99906 -16.21781 -15.59888 -15.17545 -14.99181 -14.32235 -14.06600 -13.36280 -13.07935 -12.77815 -12.17842 -12.01386 -11.69027 -11.59601 -11.33324 -11.20595 -11.01445 -10.95549 -10.86481 -10.55312 -10.17019 -9.89744 -9.69096 -9.47378 -8.90316 -8.60789 -6.97523 -6.07679 -4.16629 0.61230 3.26103 3.32852 3.33831 3.38129 4.19940 4.33835 4.51257 4.87721 5.12129 5.22526 5.31247 5.55240 5.64742 5.70649 6.04959 6.15850 6.37883 6.42283 6.64746 6.66375 6.81308 7.09752 7.19058 7.62998 7.75706 7.88006 8.30240 8.74655 8.97983 9.48206 10.97477 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.035439 B = 0.010801 C = 0.009750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.894252 B = 2591.761013 C = 2871.075257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.588 5.588 3 C 0.103 3.897 4 C -0.619 4.619 5 S 2.409 3.591 6 O -0.975 6.975 7 O -0.914 6.914 8 C -0.593 4.593 9 C -0.093 4.093 10 C 0.137 3.863 11 H 0.114 0.886 12 C -0.516 4.516 13 H 0.060 0.940 14 C 0.069 3.931 15 N -0.867 5.867 16 Si 0.892 3.108 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.276 1.276 20 H 0.035 0.965 21 H 0.026 0.974 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.132 0.868 26 H 0.128 0.872 27 H 0.113 0.887 28 H 0.128 0.872 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.991 1.751 -7.026 7.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.314 5.314 3 C -0.029 4.029 4 C -0.749 4.749 5 S 2.593 3.407 6 O -0.972 6.972 7 O -0.911 6.911 8 C -0.724 4.724 9 C -0.132 4.132 10 C 0.033 3.967 11 H 0.131 0.869 12 C -0.555 4.555 13 H 0.079 0.921 14 C -0.137 4.137 15 N -0.502 5.502 16 Si 0.719 3.281 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 H 0.054 0.946 21 H 0.045 0.955 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.059 0.941 25 H 0.151 0.849 26 H 0.146 0.854 27 H 0.131 0.869 28 H 0.146 0.854 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.527 2.151 -6.529 7.726 hybrid contribution -0.999 -0.829 0.348 1.344 sum 2.528 1.322 -6.181 6.807 Atomic orbital electron populations 1.21800 0.86785 1.00110 0.99101 1.58706 1.08646 1.09925 1.54099 1.20328 0.89031 0.92951 1.00589 1.30571 1.11263 1.12041 1.21044 1.08201 0.75089 0.79249 0.78183 1.93482 1.37122 1.79065 1.87552 1.93643 1.71099 1.83375 1.42986 1.30564 1.07660 1.23584 1.10546 1.22043 0.88905 1.02364 0.99897 1.20597 0.94116 0.91849 0.90126 0.86941 1.20751 1.20977 1.20430 0.93367 0.92139 1.25100 0.96021 0.95384 0.97212 1.69998 1.42763 1.33247 1.04217 0.86668 0.81488 0.82162 0.77754 1.20093 1.21249 1.20103 0.94624 0.95515 0.91717 0.90900 0.94121 0.84928 0.85421 0.86870 0.85364 0.90469 0.91288 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.41 8.55 60.07 0.51 1.92 16 2 N -0.59 -12.11 3.58 -241.54 -0.87 -12.98 16 3 C 0.10 1.88 5.06 -6.71 -0.03 1.84 16 4 C -0.62 -9.54 5.91 38.23 0.23 -9.31 16 5 S 2.41 44.10 4.92 -107.50 -0.53 43.57 16 6 O -0.98 -19.27 18.06 -57.91 -1.05 -20.31 16 7 O -0.91 -21.15 14.10 -57.91 -0.82 -21.97 16 8 C -0.59 -10.09 6.54 37.93 0.25 -9.84 16 9 C -0.09 -1.80 5.34 -26.53 -0.14 -1.94 16 10 C 0.14 3.19 2.34 -69.37 -0.16 3.02 16 11 H 0.11 2.88 3.06 -51.84 -0.16 2.73 16 12 C -0.52 -13.20 5.78 -34.44 -0.20 -13.40 16 13 H 0.06 1.52 7.24 -52.49 -0.38 1.14 16 14 C 0.07 1.83 5.45 -17.82 -0.10 1.73 16 15 N -0.87 -24.66 12.66 55.43 0.70 -23.96 16 16 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H 0.04 0.82 7.71 -51.93 -0.40 0.42 16 21 H 0.03 0.45 7.63 -51.93 -0.40 0.06 16 22 H 0.06 1.33 6.90 -51.93 -0.36 0.97 16 23 H 0.07 1.15 7.63 -51.93 -0.40 0.75 16 24 H 0.04 0.85 7.21 -51.93 -0.37 0.47 16 25 H 0.13 1.75 7.74 -51.79 -0.40 1.35 16 26 H 0.13 1.62 8.14 -51.78 -0.42 1.20 16 27 H 0.11 1.52 8.14 -51.93 -0.42 1.09 16 28 H 0.13 2.21 8.14 -51.93 -0.42 1.79 16 29 H 0.08 1.54 7.69 -51.93 -0.40 1.14 16 30 H 0.07 1.20 7.31 -51.93 -0.38 0.82 16 31 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 252.01 15.07 3.80 3.80 Total: -1.00 -31.97 252.01 -7.47 -39.44 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.05 Total: 2.98 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: 0.35 Total: -25.98 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.16 Total: -36.93 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -1.86 Total: -42.28 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 44.10 SS G_CDS: -0.53 Total: 43.57 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.97 -7.47 -39.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260511862.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.523 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds