Wall clock time and date at job start Mon Mar 30 2020 03:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.39176 * 111.00067 * 2 1 4 4 C 1.55034 * 110.28102 * 193.15439 * 3 2 1 5 5 S 1.79469 * 109.76590 * 287.46480 * 4 3 2 6 6 O 1.42096 * 108.00429 * 203.74149 * 5 4 3 7 7 O 1.42104 * 108.00065 * 333.28488 * 5 4 3 8 8 C 1.82314 * 105.44509 * 88.46856 * 5 4 3 9 9 C 1.54473 * 110.35134 * 319.41681 * 8 5 4 10 10 C 1.47008 * 110.99765 * 132.09673 * 2 1 3 11 11 H 1.09003 * 110.43750 * 254.14535 * 10 2 1 12 12 C 1.50704 * 110.43881 * 16.51624 * 10 2 1 13 13 H 1.07998 * 119.99296 * 59.72496 * 12 10 2 14 14 C 1.37873 * 120.00344 * 239.73316 * 12 10 2 15 15 N 1.31519 * 119.99783 * 6.21673 * 14 12 10 16 16 Si 1.86801 * 120.00024 * 186.21830 * 14 12 10 17 17 H 1.48496 * 109.46890 * 59.99857 * 16 14 12 18 18 H 1.48500 * 109.46873 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46707 * 299.99758 * 16 14 12 20 20 H 1.09003 * 109.46839 * 282.69870 * 1 2 3 21 21 H 1.09003 * 109.46876 * 42.69447 * 1 2 3 22 22 H 1.08997 * 109.47271 * 162.70223 * 1 2 3 23 23 H 1.08992 * 109.33609 * 313.40518 * 3 2 1 24 24 H 1.09004 * 109.33231 * 73.07267 * 3 2 1 25 25 H 1.09004 * 109.42483 * 47.55748 * 4 3 2 26 26 H 1.09007 * 109.42234 * 167.37334 * 4 3 2 27 27 H 1.08995 * 109.32470 * 79.68143 * 8 5 4 28 28 H 1.08999 * 109.32589 * 199.33007 * 8 5 4 29 29 H 1.09002 * 109.56800 * 201.23647 * 9 8 5 30 30 H 1.09000 * 109.56688 * 80.87055 * 9 8 5 31 31 H 0.96997 * 119.99786 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9678 1.2993 0.0000 4 6 3.4824 1.2935 -0.3309 5 16 4.4069 0.6547 1.0683 6 8 5.7340 1.1556 0.9835 7 8 3.6544 0.9115 2.2461 8 6 4.4697 -1.1511 0.8251 9 6 3.1095 -1.6714 0.3100 10 6 1.9958 -0.9201 1.0184 11 1 2.3927 -0.3622 1.8666 12 6 0.9204 -1.8726 1.4738 13 1 0.4438 -2.5294 0.7612 14 6 0.5449 -1.9053 2.8000 15 7 1.0352 -1.0241 3.6442 16 14 -0.6602 -3.2014 3.3978 17 1 -0.0964 -4.5528 3.1510 18 1 -0.8979 -3.0228 4.8527 19 1 -1.9439 -3.0592 2.6649 20 1 -0.3633 0.2259 1.0026 21 1 -0.3633 0.7553 -0.6969 22 1 -0.3633 -0.9811 -0.3056 23 1 1.4374 1.8895 -0.7472 24 1 1.8175 1.7435 0.9840 25 1 3.6608 0.6626 -1.2018 26 1 3.8099 2.3103 -0.5480 27 1 5.2460 -1.3904 0.0984 28 1 4.7021 -1.6350 1.7738 29 1 3.0227 -2.7373 0.5211 30 1 3.0375 -1.5031 -0.7645 31 1 0.7713 -1.0473 4.5773 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260511862.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:31 Heat of formation + Delta-G solvation = -69.879956 kcal Electronic energy + Delta-G solvation = -15975.913983 eV Core-core repulsion = 13384.633706 eV Total energy + Delta-G solvation = -2591.280277 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -39.83646 -37.67909 -36.93550 -35.02809 -33.89694 -31.99675 -28.69934 -26.74332 -25.16308 -23.36644 -21.20853 -19.47322 -18.79155 -17.66676 -17.21299 -16.87270 -16.53558 -16.03973 -15.59278 -14.95442 -14.58922 -14.40663 -13.62598 -13.53307 -13.26227 -13.18726 -12.92528 -12.83715 -12.76536 -12.56925 -12.49754 -12.28845 -11.80592 -11.35914 -11.26195 -11.08436 -10.71429 -10.58889 -8.66057 -8.08170 -6.20790 -0.78811 1.43278 1.44199 1.51883 2.01490 2.42914 2.81605 3.07335 3.13635 3.54866 3.82273 3.97327 4.19343 4.23621 4.41942 4.64090 4.80038 4.86599 4.94841 5.04080 5.16997 5.23210 5.40506 5.52227 5.72028 5.91542 6.07719 6.48956 7.02365 7.08491 7.47614 8.96918 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.035439 B = 0.010801 C = 0.009750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.894252 B = 2591.761013 C = 2871.075257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.577 5.577 3 C 0.091 3.909 4 C -0.596 4.596 5 S 2.403 3.597 6 O -0.995 6.995 7 O -0.974 6.974 8 C -0.584 4.584 9 C -0.089 4.089 10 C 0.116 3.884 11 H 0.091 0.909 12 C -0.515 4.515 13 H 0.062 0.938 14 C 0.016 3.984 15 N -0.911 5.911 16 Si 0.950 3.050 17 H -0.267 1.267 18 H -0.293 1.293 19 H -0.268 1.268 20 H -0.004 1.004 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.109 0.891 24 H 0.008 0.992 25 H 0.169 0.831 26 H 0.162 0.838 27 H 0.158 0.842 28 H 0.119 0.881 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.291 1.440 -9.746 10.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.302 5.302 3 C -0.040 4.040 4 C -0.729 4.729 5 S 2.592 3.408 6 O -0.992 6.992 7 O -0.971 6.971 8 C -0.716 4.716 9 C -0.128 4.128 10 C 0.011 3.989 11 H 0.108 0.892 12 C -0.554 4.554 13 H 0.080 0.920 14 C -0.185 4.185 15 N -0.549 5.549 16 Si 0.775 3.225 17 H -0.192 1.192 18 H -0.219 1.219 19 H -0.193 1.193 20 H 0.015 0.985 21 H 0.083 0.917 22 H 0.078 0.922 23 H 0.127 0.873 24 H 0.026 0.974 25 H 0.186 0.814 26 H 0.180 0.820 27 H 0.176 0.824 28 H 0.138 0.862 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.841 1.833 -9.243 10.176 hybrid contribution -1.107 -0.693 1.087 1.699 sum 2.734 1.140 -8.156 8.677 Atomic orbital electron populations 1.21794 0.87053 1.01055 0.97799 1.58773 1.08492 1.10714 1.52188 1.20520 0.91429 0.91940 1.00140 1.30364 1.07999 1.14759 1.19752 1.08079 0.74517 0.79785 0.78462 1.93453 1.38075 1.79598 1.88056 1.93588 1.72113 1.84472 1.46934 1.30448 1.07815 1.21847 1.11498 1.21878 0.88577 1.01261 1.01133 1.20686 0.94857 0.92371 0.90961 0.89170 1.21112 1.20862 1.20205 0.93250 0.92029 1.25827 0.97825 0.97144 0.97697 1.70171 1.45057 1.35492 1.04144 0.85743 0.79798 0.80098 0.76818 1.19237 1.21885 1.19307 0.98507 0.91745 0.92182 0.87287 0.97410 0.81353 0.81983 0.82361 0.86238 0.91295 0.88408 0.93123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.78 8.55 127.69 1.09 3.87 16 2 N -0.58 -22.58 3.58 -918.09 -3.29 -25.87 16 3 C 0.09 3.10 5.06 88.38 0.45 3.55 16 4 C -0.60 -16.04 5.91 72.68 0.43 -15.61 16 5 S 2.40 84.94 4.92 -56.49 -0.28 84.66 16 6 O -0.99 -37.81 18.06 -127.30 -2.30 -40.10 16 7 O -0.97 -46.47 14.10 -127.30 -1.80 -48.26 16 8 C -0.58 -18.61 6.54 72.48 0.47 -18.14 16 9 C -0.09 -3.26 5.34 30.73 0.16 -3.10 16 10 C 0.12 5.35 2.34 43.78 0.10 5.45 16 11 H 0.09 4.72 3.06 -2.44 -0.01 4.71 16 12 C -0.52 -26.42 5.78 25.60 0.15 -26.27 16 13 H 0.06 3.06 7.24 -2.91 -0.02 3.04 16 14 C 0.02 0.87 5.45 84.65 0.46 1.34 16 15 N -0.91 -53.91 12.66 21.45 0.27 -53.64 16 16 Si 0.95 42.59 29.54 68.60 2.03 44.62 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 H 0.00 -0.18 7.71 -2.39 -0.02 -0.20 16 21 H 0.06 2.02 7.63 -2.39 -0.02 2.01 16 22 H 0.06 2.38 6.90 -2.39 -0.02 2.37 16 23 H 0.11 2.96 7.63 -2.39 -0.02 2.95 16 24 H 0.01 0.33 7.21 -2.38 -0.02 0.31 16 25 H 0.17 3.41 7.74 -2.47 -0.02 3.40 16 26 H 0.16 3.34 8.14 -2.47 -0.02 3.32 16 27 H 0.16 3.56 8.14 -2.39 -0.02 3.54 16 28 H 0.12 4.05 8.14 -2.39 -0.02 4.03 16 29 H 0.07 2.63 7.69 -2.39 -0.02 2.61 16 30 H 0.10 2.98 7.31 -2.39 -0.02 2.96 16 31 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -71.71 252.01 -0.93 -72.63 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 1.12 Total: 14.88 kcal Atomic # 6 Polarization: -52.23 SS G_CDS: 3.32 Total: -48.92 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -3.02 Total: -79.51 kcal Atomic # 8 Polarization: -84.27 SS G_CDS: -4.09 Total: -88.37 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: 84.94 SS G_CDS: -0.28 Total: 84.66 kcal Total: -71.71 -0.93 -72.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260511862.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.754 kcal (2) G-P(sol) polarization free energy of solvation -71.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds