Wall clock time and date at job start Mon Mar 30 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46904 * 110.99963 * 2 1 4 4 C 1.50699 * 109.29863 * 303.58251 * 3 2 1 5 5 H 1.08001 * 119.99895 * 122.21683 * 4 3 2 6 6 C 1.37873 * 119.99760 * 302.21329 * 4 3 2 7 7 N 1.31513 * 120.00360 * 6.45655 * 6 4 3 8 8 Si 1.86807 * 119.99715 * 186.45063 * 6 4 3 9 9 H 1.48499 * 109.47174 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47233 * 120.00334 * 8 6 4 11 11 H 1.48496 * 109.47149 * 240.00213 * 8 6 4 12 12 C 1.52590 * 109.38177 * 63.32052 * 3 2 1 13 13 C 1.52588 * 110.63978 * 190.14574 * 12 3 2 14 14 C 1.53038 * 109.98570 * 290.00895 * 13 12 3 15 15 S 1.81671 * 108.99750 * 63.64979 * 14 13 12 16 16 O 1.42097 * 108.66755 * 191.37296 * 15 14 13 17 17 O 1.42098 * 108.66206 * 60.02899 * 15 14 13 18 18 C 1.53036 * 109.38371 * 183.84167 * 3 2 1 19 19 H 1.09002 * 109.47090 * 293.91543 * 1 2 3 20 20 H 1.09003 * 109.47716 * 53.91520 * 1 2 3 21 21 H 1.09000 * 109.47308 * 173.91921 * 1 2 3 22 22 H 1.00900 * 110.99914 * 123.95539 * 2 1 3 23 23 H 0.96999 * 120.00109 * 180.02562 * 7 6 4 24 24 H 1.09001 * 109.24360 * 310.44169 * 12 3 2 25 25 H 1.09000 * 109.24401 * 69.84085 * 12 3 2 26 26 H 1.09006 * 109.38202 * 169.85718 * 13 12 3 27 27 H 1.08994 * 109.30190 * 50.11871 * 13 12 3 28 28 H 1.09007 * 109.54928 * 303.79719 * 14 13 12 29 29 H 1.08995 * 109.63452 * 183.55443 * 14 13 12 30 30 H 1.08998 * 109.54978 * 296.05428 * 18 3 2 31 31 H 1.08997 * 109.54814 * 56.34490 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.4394 2.1184 -1.1849 5 1 0.8785 3.0290 -1.0345 6 6 1.6469 1.6393 -2.4610 7 7 2.2181 0.4681 -2.6389 8 14 1.1165 2.6537 -3.9372 9 1 0.5038 3.9235 -3.4709 10 1 2.3005 2.9565 -4.7809 11 1 0.1242 1.8879 -4.7334 12 6 1.5735 2.0758 1.2862 13 6 1.8857 3.5675 1.2098 14 6 3.3993 3.7883 1.2578 15 16 4.1545 3.0289 -0.2097 16 8 5.5642 3.0021 -0.0333 17 8 3.6087 3.6409 -1.3702 18 6 3.5221 1.3295 -0.0967 19 1 -0.3633 0.4166 0.9394 20 1 -0.3634 0.6053 -0.8305 21 1 -0.3634 -1.0219 -0.1089 22 1 1.8305 -0.5261 0.7814 23 1 2.3644 0.1312 -3.5367 24 1 0.5023 1.9402 1.4353 25 1 2.1108 1.6389 2.1279 26 1 1.4187 4.0784 2.0519 27 1 1.4905 3.9710 0.2776 28 1 3.8068 3.3273 2.1576 29 1 3.6134 4.8569 1.2665 30 1 3.9307 0.8465 0.7909 31 1 3.8160 0.7711 -0.9855 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261043069.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:36 Heat of formation + Delta-G solvation = -55.861536 kcal Electronic energy + Delta-G solvation = -16220.374910 eV Core-core repulsion = 13629.702518 eV Total energy + Delta-G solvation = -2590.672393 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -37.85018 -35.89759 -34.93426 -33.37389 -31.91695 -29.47171 -26.79326 -25.20772 -23.84723 -21.73888 -19.34067 -17.94588 -16.25711 -15.89076 -15.19185 -14.82654 -14.57912 -14.30946 -13.76750 -13.18290 -13.15384 -12.51179 -12.26592 -11.93051 -11.63816 -11.09670 -11.06093 -10.86924 -10.73834 -10.68043 -10.60900 -10.40078 -10.31652 -9.74696 -9.71461 -9.22347 -8.90265 -8.35071 -6.91625 -5.89476 -4.08263 1.07113 3.42170 3.52584 3.57490 3.71548 4.53544 4.62267 4.83275 5.23705 5.31283 5.43192 5.64128 5.70074 5.87264 5.99866 6.11018 6.19670 6.36119 6.40323 6.47266 6.61792 6.75792 6.78611 7.15658 7.37711 7.86202 7.98918 8.42330 8.77838 9.06473 9.65597 11.09008 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.023781 B = 0.016465 C = 0.012588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.125759 B = 1700.193337 C = 2223.866335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.642 5.642 3 C 0.261 3.739 4 C -0.537 4.537 5 H 0.070 0.930 6 C 0.100 3.900 7 N -0.841 5.841 8 Si 0.890 3.110 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.293 1.293 12 C -0.162 4.162 13 C -0.097 4.097 14 C -0.610 4.610 15 S 2.417 3.583 16 O -0.985 6.985 17 O -0.910 6.910 18 C -0.559 4.559 19 H -0.007 1.007 20 H 0.079 0.921 21 H 0.036 0.964 22 H 0.298 0.702 23 H 0.256 0.744 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.718 2.175 7.424 7.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.269 5.269 3 C 0.170 3.830 4 C -0.575 4.575 5 H 0.088 0.912 6 C -0.108 4.108 7 N -0.474 5.474 8 Si 0.718 3.282 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.220 1.220 12 C -0.201 4.201 13 C -0.136 4.136 14 C -0.737 4.737 15 S 2.600 3.400 16 O -0.982 6.982 17 O -0.907 6.907 18 C -0.692 4.692 19 H 0.011 0.989 20 H 0.098 0.902 21 H 0.054 0.946 22 H 0.113 0.887 23 H 0.066 0.934 24 H 0.089 0.911 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.106 0.894 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.007 2.374 5.976 6.430 hybrid contribution -0.823 0.380 0.853 1.244 sum -0.830 2.754 6.828 7.409 Atomic orbital electron populations 1.21930 0.89694 0.99260 0.99115 1.60606 1.05922 1.14690 1.45687 1.18054 0.86683 0.86723 0.91534 1.20948 1.38191 1.08862 0.89523 0.91212 1.24812 0.93667 0.93613 0.98733 1.70120 1.40041 1.16111 1.21177 0.86585 0.78009 0.80644 0.82977 1.19594 1.20774 1.21985 1.22479 1.02278 0.95273 1.00083 1.21199 0.90491 0.97716 1.04196 1.30262 1.09102 1.12327 1.22045 1.07881 0.74531 0.80306 0.77278 1.93478 1.29657 1.87719 1.87333 1.93573 1.79368 1.74662 1.43060 1.29930 1.09289 1.19856 1.10145 0.98912 0.90219 0.94570 0.88696 0.93410 0.91074 0.93904 0.92399 0.88156 0.86875 0.86678 0.89429 0.82686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.99 10.01 60.06 0.60 1.59 16 2 N -0.64 -13.62 5.43 -108.56 -0.59 -14.21 16 3 C 0.26 5.51 0.33 -132.94 -0.04 5.47 16 4 C -0.54 -13.01 3.34 -34.44 -0.12 -13.13 16 5 H 0.07 1.70 5.99 -52.49 -0.31 1.38 16 6 C 0.10 2.61 4.70 -17.82 -0.08 2.52 16 7 N -0.84 -22.45 11.00 55.43 0.61 -21.85 16 8 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 C -0.16 -2.85 4.60 -27.15 -0.12 -2.98 16 13 C -0.10 -1.62 5.56 -26.92 -0.15 -1.77 16 14 C -0.61 -9.65 6.35 37.18 0.24 -9.41 16 15 S 2.42 48.56 5.21 -107.50 -0.56 48.00 16 16 O -0.98 -21.69 18.10 -57.81 -1.05 -22.73 16 17 O -0.91 -21.55 15.54 -57.81 -0.90 -22.44 16 18 C -0.56 -11.55 5.24 37.18 0.19 -11.35 16 19 H -0.01 -0.13 6.48 -51.93 -0.34 -0.47 16 20 H 0.08 1.76 6.69 -51.93 -0.35 1.42 16 21 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.30 5.65 8.82 -39.29 -0.35 5.31 16 23 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 24 H 0.07 1.24 6.11 -51.93 -0.32 0.93 16 25 H 0.04 0.67 8.09 -51.93 -0.42 0.25 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.10 1.85 5.69 -51.93 -0.30 1.56 16 28 H 0.11 1.52 8.14 -51.92 -0.42 1.10 16 29 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 30 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 31 H 0.16 3.67 6.57 -51.93 -0.34 3.33 16 LS Contribution 249.73 15.07 3.76 3.76 Total: -1.00 -30.08 249.73 -7.19 -37.27 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -3.97 Total: 4.52 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: 0.52 Total: -29.06 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.02 Total: -36.05 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -1.94 Total: -45.18 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 48.56 SS G_CDS: -0.56 Total: 48.00 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.08 -7.19 -37.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261043069.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.589 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds