Wall clock time and date at job start Mon Mar 30 2020 03:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42104 * 108.57613 * 2 1 4 4 O 1.42101 * 108.57673 * 228.98101 * 2 1 3 5 5 C 1.81391 * 101.92567 * 114.49102 * 2 1 3 6 6 C 1.53006 * 115.54934 * 54.63775 * 5 2 1 7 7 N 1.46891 * 109.47088 * 36.23274 * 6 5 2 8 8 C 1.46902 * 110.99903 * 185.71524 * 7 6 5 9 9 C 1.50706 * 109.47048 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00240 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99924 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99729 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99900 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47171 * 89.99762 * 13 11 9 15 15 H 1.48500 * 109.46778 * 209.99590 * 13 11 9 16 16 H 1.48504 * 109.46983 * 329.99315 * 13 11 9 17 17 C 1.52998 * 117.50457 * 200.30935 * 5 2 1 18 18 C 1.52998 * 117.50103 * 268.97186 * 5 2 1 19 19 H 1.09001 * 109.46715 * 300.03663 * 1 2 3 20 20 H 1.08998 * 109.47099 * 60.04423 * 1 2 3 21 21 H 1.09006 * 109.46992 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46970 * 156.23619 * 6 5 2 23 23 H 1.09009 * 109.47060 * 276.23130 * 6 5 2 24 24 H 1.00898 * 111.00334 * 61.75572 * 7 6 5 25 25 H 1.08996 * 109.47090 * 299.99746 * 8 7 6 26 26 H 1.08994 * 109.47597 * 59.99998 * 8 7 6 27 27 H 0.97003 * 119.99714 * 179.97438 * 12 11 9 28 28 H 1.08997 * 117.50506 * 215.00848 * 17 5 2 29 29 H 1.09002 * 117.49512 * 0.02562 * 17 5 2 30 30 H 1.08999 * 117.50030 * 359.96995 * 18 5 2 31 31 H 1.08996 * 117.50558 * 144.99881 * 18 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8840 -1.0163 5 6 2.1889 -0.7357 1.6151 6 6 1.5435 -2.0963 1.8862 7 7 1.5091 -2.8783 0.6432 8 6 0.7749 -4.1364 0.8330 9 6 0.7602 -4.9095 -0.4606 10 1 1.2471 -4.5063 -1.3362 11 6 0.1251 -6.1315 -0.5263 12 7 0.1119 -6.8059 -1.6553 13 14 -0.7177 -6.8286 0.9880 14 1 -2.1313 -6.3749 1.0208 15 1 -0.6750 -8.3122 0.9394 16 1 -0.0167 -6.3530 2.2077 17 6 3.5801 -0.4847 2.2001 18 6 2.3587 0.2146 2.8020 19 1 -0.3633 0.5144 0.8897 20 1 -0.3633 0.5131 -0.8904 21 1 -0.3633 -1.0277 0.0005 22 1 2.1258 -2.6316 2.6362 23 1 0.5271 -1.9499 2.2517 24 1 2.4416 -3.0520 0.2993 25 1 1.2642 -4.7296 1.6055 26 1 -0.2487 -3.9176 1.1366 27 1 -0.3346 -7.6658 -1.7013 28 1 4.0358 -1.2887 2.7780 29 1 4.2701 0.1231 1.6147 30 1 2.2457 1.2820 2.6124 31 1 2.0108 -0.1294 3.7760 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393698686.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:03 Heat of formation + Delta-G solvation = -66.301171 kcal Electronic energy + Delta-G solvation = -14998.662168 eV Core-core repulsion = 12407.537078 eV Total energy + Delta-G solvation = -2591.125089 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 5.11 seconds Orbital eigenvalues (eV) -39.06260 -37.97238 -36.88171 -36.31490 -34.33436 -30.46684 -29.81340 -26.32195 -23.57612 -22.95928 -22.84150 -19.47096 -18.97213 -17.81830 -17.01718 -16.85199 -16.57078 -15.93626 -15.54154 -15.31522 -14.52442 -14.45730 -13.95840 -13.81125 -13.66327 -13.38952 -13.03429 -12.85750 -12.79074 -12.50279 -12.46619 -12.00731 -11.84493 -11.75006 -11.49282 -11.31212 -11.06176 -10.78252 -9.22155 -8.26674 -6.31946 -0.72239 1.36350 1.39120 1.49513 1.91708 2.31432 2.36044 2.87453 3.06991 3.25620 3.36134 3.69392 3.87399 3.97013 4.17255 4.40382 4.55631 4.60854 4.64679 4.75949 4.81548 4.90205 5.08319 5.11629 5.11934 5.53795 5.92885 6.51471 6.64231 6.79358 7.32302 8.90765 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.038412 B = 0.007349 C = 0.006778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.762294 B = 3809.338935 C = 4129.878367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.636 4.636 2 S 2.459 3.541 3 O -0.983 6.983 4 O -0.971 6.971 5 C -0.632 4.632 6 C 0.104 3.896 7 N -0.700 5.700 8 C 0.175 3.825 9 C -0.530 4.530 10 H 0.032 0.968 11 C 0.002 3.998 12 N -0.952 5.952 13 Si 0.956 3.044 14 H -0.263 1.263 15 H -0.286 1.286 16 H -0.244 1.244 17 C -0.132 4.132 18 C -0.099 4.099 19 H 0.156 0.844 20 H 0.131 0.869 21 H 0.131 0.869 22 H 0.050 0.950 23 H 0.099 0.901 24 H 0.343 0.657 25 H -0.006 1.006 26 H 0.038 0.962 27 H 0.267 0.733 28 H 0.123 0.877 29 H 0.106 0.894 30 H 0.126 0.874 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.184 14.691 13.695 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.788 4.788 2 S 2.645 3.355 3 O -0.980 6.980 4 O -0.968 6.968 5 C -0.723 4.723 6 C -0.026 4.026 7 N -0.332 5.332 8 C 0.047 3.953 9 C -0.568 4.568 10 H 0.050 0.950 11 C -0.194 4.194 12 N -0.592 5.592 13 Si 0.779 3.221 14 H -0.188 1.188 15 H -0.212 1.212 16 H -0.167 1.167 17 C -0.170 4.170 18 C -0.137 4.137 19 H 0.174 0.826 20 H 0.150 0.850 21 H 0.150 0.850 22 H 0.068 0.932 23 H 0.117 0.883 24 H 0.161 0.839 25 H 0.012 0.988 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.141 0.859 29 H 0.124 0.876 30 H 0.144 0.856 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.182 15.173 12.687 19.814 hybrid contribution -0.166 -1.632 0.727 1.794 sum 1.016 13.541 13.414 19.088 Atomic orbital electron populations 1.30008 1.23462 1.12656 1.12703 1.06226 0.79608 0.73302 0.76359 1.93497 1.81309 1.35942 1.87264 1.93556 1.80550 1.67277 1.55416 1.31596 1.12635 1.09083 1.19036 1.21338 1.01154 0.88419 0.91676 1.60437 1.22551 1.21981 1.28257 1.19770 0.94487 0.86655 0.94436 1.21408 1.34828 1.03393 0.97205 0.94991 1.25983 0.96818 0.96996 0.99646 1.70089 1.45592 1.15116 1.28436 0.85590 0.79489 0.77297 0.79722 1.18784 1.21152 1.16739 1.23139 0.88172 1.03777 1.01914 1.23159 0.98475 0.97209 0.94876 0.82583 0.85035 0.85015 0.93181 0.88297 0.83885 0.98802 0.94405 0.92464 0.85915 0.87575 0.85614 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -14.48 10.30 113.37 1.17 -13.31 16 2 S 2.46 70.55 5.06 -56.49 -0.29 70.27 16 3 O -0.98 -30.48 17.53 -127.37 -2.23 -32.71 16 4 O -0.97 -39.08 16.54 -127.37 -2.11 -41.19 16 5 C -0.63 -14.34 2.36 -10.79 -0.03 -14.37 16 6 C 0.10 2.77 5.43 86.31 0.47 3.24 16 7 N -0.70 -27.13 4.59 -517.93 -2.38 -29.51 16 8 C 0.17 7.93 4.50 85.56 0.38 8.31 16 9 C -0.53 -30.95 9.87 25.60 0.25 -30.70 16 10 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 11 C 0.00 0.14 5.47 84.66 0.46 0.61 16 12 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 13 Si 0.96 43.01 27.47 68.60 1.88 44.90 16 14 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 15 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 17 C -0.13 -2.47 9.93 30.62 0.30 -2.16 16 18 C -0.10 -1.44 9.84 30.62 0.30 -1.14 16 19 H 0.16 2.26 8.14 -2.39 -0.02 2.24 16 20 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 21 H 0.13 3.52 7.93 -2.39 -0.02 3.50 16 22 H 0.05 1.23 7.91 -2.39 -0.02 1.21 16 23 H 0.10 2.23 8.13 -2.38 -0.02 2.22 16 24 H 0.34 14.27 8.42 -89.70 -0.75 13.51 16 25 H -0.01 -0.25 7.20 -2.39 -0.02 -0.27 16 26 H 0.04 1.62 7.57 -2.39 -0.02 1.60 16 27 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 28 H 0.12 1.98 8.06 -2.39 -0.02 1.96 16 29 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.13 1.60 7.83 -2.39 -0.02 1.58 16 31 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -77.94 275.59 -1.20 -79.14 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.31 Total: 18.73 kcal Atomic # 6 Polarization: -52.83 SS G_CDS: 3.32 Total: -49.52 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -2.08 Total: -89.61 kcal Atomic # 8 Polarization: -69.56 SS G_CDS: -4.34 Total: -73.90 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.88 Total: 44.90 kcal Atomic # 16 Polarization: 70.55 SS G_CDS: -0.29 Total: 70.27 kcal Total: -77.94 -1.20 -79.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393698686.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.840 kcal (2) G-P(sol) polarization free energy of solvation -77.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.11 seconds