Wall clock time and date at job start Mon Mar 30 2020 02:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47280 * 2 1 4 4 C 1.53006 * 109.46811 * 120.00092 * 2 1 3 5 5 C 1.50700 * 109.47095 * 294.99736 * 4 2 1 6 6 H 1.08000 * 119.99997 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99930 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99914 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99871 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47304 * 89.99807 * 9 7 5 11 11 H 1.48497 * 109.46672 * 210.00115 * 9 7 5 12 12 H 1.48502 * 109.46943 * 329.99646 * 9 7 5 13 13 C 1.53004 * 109.47202 * 239.99750 * 2 1 3 14 14 S 1.81395 * 115.54893 * 205.58419 * 13 2 1 15 15 N 1.65599 * 104.44748 * 179.91566 * 14 13 2 16 16 O 1.42105 * 110.54530 * 291.53960 * 14 13 2 17 17 O 1.42101 * 110.54333 * 68.29132 * 14 13 2 18 18 C 1.53001 * 117.51693 * 351.28896 * 13 2 1 19 19 C 1.53001 * 117.49622 * 59.91909 * 13 2 1 20 20 H 1.09006 * 109.46786 * 60.00106 * 1 2 3 21 21 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47067 * 300.00524 * 1 2 3 23 23 H 1.08999 * 109.47090 * 54.99808 * 4 2 1 24 24 H 1.09001 * 109.46527 * 174.99832 * 4 2 1 25 25 H 0.97002 * 119.99777 * 179.97438 * 8 7 5 26 26 H 0.97004 * 120.00159 * 270.00112 * 15 14 13 27 27 H 0.97005 * 120.00098 * 90.00362 * 15 14 13 28 28 H 1.09002 * 117.49466 * 214.96865 * 18 13 2 29 29 H 1.08997 * 117.49985 * 359.97438 * 18 13 2 30 30 H 1.08997 * 117.49824 * 359.96854 * 19 13 2 31 31 H 1.08995 * 117.49778 * 145.00019 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9932 -0.4018 3.7283 8 7 2.6771 -1.5183 3.8511 9 14 1.4984 0.5627 5.2497 10 1 0.1714 0.0935 5.7234 11 1 2.5079 0.3533 6.3184 12 1 1.4225 2.0079 4.9167 13 6 2.0400 -0.7213 -1.2492 14 16 3.6925 -1.4561 -1.1085 15 7 3.9621 -2.1529 -2.5863 16 8 4.6830 -0.4416 -1.0135 17 8 3.6759 -2.5509 -0.2026 18 6 1.0111 -1.4561 -2.1108 19 6 1.6342 -0.1507 -2.6096 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.6053 -1.7198 1.2952 24 1 3.1263 -0.7995 1.2056 25 1 2.9250 -1.8409 4.7317 26 1 3.6991 -3.0732 -2.7439 27 1 4.3830 -1.6408 -3.2945 28 1 1.3272 -2.3811 -2.5931 29 1 -0.0294 -1.4261 -1.7876 30 1 1.0034 0.7382 -2.6146 31 1 2.3600 -0.2170 -3.4200 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696294002.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:07 Heat of formation + Delta-G solvation = -59.548319 kcal Electronic energy + Delta-G solvation = -15396.498725 eV Core-core repulsion = 12805.666461 eV Total energy + Delta-G solvation = -2590.832264 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.28036 -36.53052 -35.44430 -33.97647 -32.77612 -31.35066 -26.98762 -24.98952 -22.59499 -21.96515 -19.77868 -18.52514 -17.18459 -16.99964 -16.44566 -16.08259 -14.78936 -14.52271 -14.34897 -13.67701 -12.99676 -12.29982 -12.08892 -11.88853 -11.71737 -11.51143 -11.45227 -11.16474 -11.07581 -10.90781 -10.80052 -10.53217 -10.47141 -10.30120 -9.89075 -9.59087 -9.12640 -9.02575 -8.32161 -5.92787 -3.98437 0.77364 3.34942 3.37842 3.41469 3.43610 3.45408 4.38682 4.48343 4.70829 4.72659 4.92875 5.15693 5.40276 5.51438 5.73490 5.82662 5.93411 6.08253 6.09177 6.11744 6.36199 6.74584 6.87009 6.97084 7.24460 7.49510 7.75392 8.00635 8.39955 9.06517 9.65108 11.17433 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.034660 B = 0.009060 C = 0.007857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.665181 B = 3089.685584 C = 3562.638215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.035 4.035 3 H 0.073 0.927 4 C 0.009 3.991 5 C -0.522 4.522 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.883 5.883 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C -0.627 4.627 14 S 2.652 3.348 15 N -1.258 6.258 16 O -0.960 6.960 17 O -0.935 6.935 18 C -0.128 4.128 19 C -0.132 4.132 20 H 0.035 0.965 21 H 0.052 0.948 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.009 0.991 25 H 0.262 0.738 26 H 0.414 0.586 27 H 0.412 0.588 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.494 -0.263 -15.294 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.055 4.055 3 H 0.091 0.909 4 C -0.028 4.028 5 C -0.560 4.560 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.521 5.521 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 C -0.716 4.716 14 S 2.741 3.259 15 N -0.926 5.926 16 O -0.950 6.950 17 O -0.925 6.925 18 C -0.166 4.166 19 C -0.170 4.170 20 H 0.054 0.946 21 H 0.071 0.929 22 H 0.088 0.912 23 H 0.054 0.946 24 H 0.027 0.973 25 H 0.071 0.929 26 H 0.242 0.758 27 H 0.239 0.761 28 H 0.117 0.883 29 H 0.134 0.866 30 H 0.125 0.875 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.825 -0.311 -14.243 14.363 hybrid contribution -0.700 0.439 0.243 0.862 sum -2.525 0.128 -14.000 14.227 Atomic orbital electron populations 1.21795 0.95114 1.01273 1.00635 1.20609 0.96300 0.98522 0.90051 0.90884 1.19468 0.95557 0.96876 0.90923 1.21033 1.35905 1.08503 0.90530 0.92225 1.25064 0.95129 0.95082 0.99195 1.70020 1.37743 1.20818 1.23551 0.86601 0.78194 0.80363 0.82874 1.20681 1.21167 1.19849 1.32545 1.21383 1.16412 1.01266 1.03872 0.75511 0.74438 0.72088 1.53769 1.78526 1.25220 1.35127 1.93561 1.54848 1.61407 1.85181 1.93665 1.86676 1.51943 1.60179 1.22929 0.99011 0.95440 0.99251 1.22756 1.03255 0.98761 0.92246 0.94630 0.92867 0.91241 0.94643 0.97341 0.92853 0.75808 0.76067 0.88328 0.86627 0.87480 0.88316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 7.60 37.16 0.28 -2.04 16 2 C -0.04 -0.72 2.58 -90.61 -0.23 -0.95 16 3 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 4 C 0.01 0.24 3.35 -27.88 -0.09 0.15 16 5 C -0.52 -14.96 8.41 -34.44 -0.29 -15.25 16 6 H 0.06 1.62 7.06 -52.49 -0.37 1.25 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.88 -27.73 13.29 55.43 0.74 -27.00 16 9 Si 0.89 22.10 29.54 -169.99 -5.02 17.07 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C -0.63 -10.33 2.64 -90.62 -0.24 -10.57 16 14 S 2.65 48.27 4.57 -107.50 -0.49 47.78 16 15 N -1.26 -14.11 8.17 60.35 0.49 -13.62 16 16 O -0.96 -20.61 18.10 -57.54 -1.04 -21.65 16 17 O -0.93 -21.38 16.53 -57.54 -0.95 -22.33 16 18 C -0.13 -1.59 9.08 -26.73 -0.24 -1.83 16 19 C -0.13 -1.55 9.41 -26.73 -0.25 -1.80 16 20 H 0.03 0.51 7.07 -51.93 -0.37 0.14 16 21 H 0.05 0.92 6.97 -51.93 -0.36 0.56 16 22 H 0.07 1.34 6.95 -51.93 -0.36 0.97 16 23 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.01 0.25 6.06 -51.93 -0.31 -0.07 16 25 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 26 H 0.41 3.70 8.96 -34.47 -0.31 3.39 16 27 H 0.41 3.53 8.96 -34.47 -0.31 3.22 16 28 H 0.10 0.96 7.82 -51.93 -0.41 0.55 16 29 H 0.12 1.40 5.85 -51.93 -0.30 1.10 16 30 H 0.11 1.19 7.60 -51.93 -0.39 0.79 16 31 H 0.10 0.88 7.82 -51.93 -0.41 0.48 16 LS Contribution 265.76 15.07 4.00 4.00 Total: -1.00 -36.91 265.76 -7.32 -44.23 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -3.88 Total: 2.20 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: -1.17 Total: -30.69 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 1.23 Total: -40.61 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -1.99 Total: -43.98 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 48.27 SS G_CDS: -0.49 Total: 47.78 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -36.91 -7.32 -44.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696294002.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.316 kcal (2) G-P(sol) polarization free energy of solvation -36.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds