Wall clock time and date at job start Mon Mar 30 2020 02:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47280 * 2 1 4 4 C 1.53006 * 109.46811 * 120.00092 * 2 1 3 5 5 C 1.50700 * 109.47095 * 294.99736 * 4 2 1 6 6 H 1.08000 * 119.99997 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99930 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99914 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99871 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47304 * 89.99807 * 9 7 5 11 11 H 1.48497 * 109.46672 * 210.00115 * 9 7 5 12 12 H 1.48502 * 109.46943 * 329.99646 * 9 7 5 13 13 C 1.53004 * 109.47202 * 239.99750 * 2 1 3 14 14 S 1.81395 * 115.54893 * 205.58419 * 13 2 1 15 15 N 1.65599 * 104.44748 * 179.91566 * 14 13 2 16 16 O 1.42105 * 110.54530 * 291.53960 * 14 13 2 17 17 O 1.42101 * 110.54333 * 68.29132 * 14 13 2 18 18 C 1.53001 * 117.51693 * 351.28896 * 13 2 1 19 19 C 1.53001 * 117.49622 * 59.91909 * 13 2 1 20 20 H 1.09006 * 109.46786 * 60.00106 * 1 2 3 21 21 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47067 * 300.00524 * 1 2 3 23 23 H 1.08999 * 109.47090 * 54.99808 * 4 2 1 24 24 H 1.09001 * 109.46527 * 174.99832 * 4 2 1 25 25 H 0.97002 * 119.99777 * 179.97438 * 8 7 5 26 26 H 0.97004 * 120.00159 * 270.00112 * 15 14 13 27 27 H 0.97005 * 120.00098 * 90.00362 * 15 14 13 28 28 H 1.09002 * 117.49466 * 214.96865 * 18 13 2 29 29 H 1.08997 * 117.49985 * 359.97438 * 18 13 2 30 30 H 1.08997 * 117.49824 * 359.96854 * 19 13 2 31 31 H 1.08995 * 117.49778 * 145.00019 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9932 -0.4018 3.7283 8 7 2.6771 -1.5183 3.8511 9 14 1.4984 0.5627 5.2497 10 1 0.1714 0.0935 5.7234 11 1 2.5079 0.3533 6.3184 12 1 1.4225 2.0079 4.9167 13 6 2.0400 -0.7213 -1.2492 14 16 3.6925 -1.4561 -1.1085 15 7 3.9621 -2.1529 -2.5863 16 8 4.6830 -0.4416 -1.0135 17 8 3.6759 -2.5509 -0.2026 18 6 1.0111 -1.4561 -2.1108 19 6 1.6342 -0.1507 -2.6096 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.6053 -1.7198 1.2952 24 1 3.1263 -0.7995 1.2056 25 1 2.9250 -1.8409 4.7317 26 1 3.6991 -3.0732 -2.7439 27 1 4.3830 -1.6408 -3.2945 28 1 1.3272 -2.3811 -2.5931 29 1 -0.0294 -1.4261 -1.7876 30 1 1.0034 0.7382 -2.6146 31 1 2.3600 -0.2170 -3.4200 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696294002.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:06 Heat of formation + Delta-G solvation = -90.237003 kcal Electronic energy + Delta-G solvation = -15397.829486 eV Core-core repulsion = 12805.666461 eV Total energy + Delta-G solvation = -2592.163025 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.55077 -38.10070 -37.02049 -35.71179 -34.19923 -33.05939 -28.85544 -26.69213 -23.86468 -23.42297 -21.29642 -19.92184 -18.73893 -18.29024 -18.04546 -17.59073 -16.52880 -16.03776 -15.86353 -15.29086 -14.50618 -14.14682 -13.82868 -13.27040 -13.17636 -13.14252 -13.05488 -12.80177 -12.78039 -12.50832 -12.25261 -12.04611 -12.00544 -11.76493 -11.39753 -11.10182 -10.95401 -10.69178 -10.57445 -8.18456 -6.32601 -0.60106 1.37246 1.40450 1.51193 2.13926 2.36441 2.41048 3.01279 3.12906 3.48446 3.53613 3.79321 3.98774 4.41001 4.48946 4.56382 4.68258 4.85990 4.94098 5.13850 5.18374 5.24143 5.24511 5.35657 5.45253 5.66967 5.81281 6.18901 6.45383 6.84552 7.36666 8.93251 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.034660 B = 0.009060 C = 0.007857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.665181 B = 3089.685584 C = 3562.638215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.032 4.032 3 H 0.065 0.935 4 C 0.011 3.989 5 C -0.537 4.537 6 H 0.072 0.928 7 C -0.008 4.008 8 N -0.932 5.932 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.259 1.259 13 C -0.659 4.659 14 S 2.651 3.349 15 N -1.227 6.227 16 O -1.007 7.007 17 O -0.998 6.998 18 C -0.116 4.116 19 C -0.100 4.100 20 H 0.080 0.920 21 H 0.054 0.946 22 H 0.049 0.951 23 H 0.004 0.996 24 H -0.027 1.027 25 H 0.263 0.737 26 H 0.429 0.571 27 H 0.429 0.571 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.341 0.875 -17.513 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.052 4.052 3 H 0.083 0.917 4 C -0.027 4.027 5 C -0.575 4.575 6 H 0.090 0.910 7 C -0.206 4.206 8 N -0.572 5.572 9 Si 0.792 3.208 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.183 1.183 13 C -0.752 4.752 14 S 2.744 3.256 15 N -0.904 5.904 16 O -0.997 6.997 17 O -0.988 6.988 18 C -0.153 4.153 19 C -0.138 4.138 20 H 0.098 0.902 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.022 0.978 24 H -0.009 1.009 25 H 0.071 0.929 26 H 0.260 0.740 27 H 0.261 0.739 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.644 0.818 -16.491 16.909 hybrid contribution -0.146 0.070 0.829 0.845 sum -3.790 0.889 -15.662 16.139 Atomic orbital electron populations 1.21751 0.92785 1.01803 1.01868 1.20363 0.98165 0.97524 0.89126 0.91711 1.19368 0.93333 0.95921 0.94059 1.21576 1.35360 1.08907 0.91620 0.91034 1.26135 0.95057 0.96129 1.03233 1.70201 1.39556 1.23052 1.24416 0.85407 0.78115 0.79251 0.78044 1.19270 1.21094 1.18324 1.32061 1.20646 1.20232 1.02229 1.03283 0.76144 0.73368 0.72834 1.52972 1.78397 1.25903 1.33127 1.93485 1.57421 1.62475 1.86296 1.93581 1.87826 1.54049 1.63357 1.23279 0.98182 0.97260 0.96622 1.23135 1.02770 0.98970 0.88962 0.90150 0.92681 0.93209 0.97802 1.00921 0.92854 0.73961 0.73927 0.85414 0.85914 0.85868 0.84875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.20 7.60 71.98 0.55 -3.66 16 2 C -0.03 -1.31 2.58 -10.79 -0.03 -1.34 16 3 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 4 C 0.01 0.59 3.35 29.85 0.10 0.69 16 5 C -0.54 -31.68 8.41 25.60 0.22 -31.46 16 6 H 0.07 3.92 7.06 -2.91 -0.02 3.90 16 7 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 8 N -0.93 -61.19 13.29 21.45 0.28 -60.91 16 9 Si 0.97 46.13 29.54 68.60 2.03 48.16 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 13 C -0.66 -20.66 2.64 -10.79 -0.03 -20.69 16 14 S 2.65 98.06 4.57 -56.49 -0.26 97.80 16 15 N -1.23 -25.10 8.17 37.02 0.30 -24.80 16 16 O -1.01 -44.73 18.10 -127.65 -2.31 -47.04 16 17 O -1.00 -48.37 16.53 -127.65 -2.11 -50.48 16 18 C -0.12 -2.39 9.08 30.60 0.28 -2.11 16 19 C -0.10 -1.87 9.41 30.60 0.29 -1.58 16 20 H 0.08 1.98 7.07 -2.38 -0.02 1.97 16 21 H 0.05 1.81 6.97 -2.39 -0.02 1.80 16 22 H 0.05 1.85 6.95 -2.39 -0.02 1.84 16 23 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 24 H -0.03 -1.70 6.06 -2.39 -0.01 -1.72 16 25 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 26 H 0.43 6.62 8.96 -96.74 -0.87 5.76 16 27 H 0.43 6.08 8.96 -96.74 -0.87 5.21 16 28 H 0.13 1.89 7.82 -2.39 -0.02 1.87 16 29 H 0.12 2.43 5.85 -2.39 -0.01 2.42 16 30 H 0.12 2.00 7.60 -2.39 -0.02 1.98 16 31 H 0.13 1.60 7.82 -2.39 -0.02 1.58 16 Total: -1.00 -86.83 265.76 -0.81 -87.64 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -0.58 Total: 9.78 kcal Atomic # 6 Polarization: -61.99 SS G_CDS: 1.83 Total: -60.16 kcal Atomic # 7 Polarization: -86.29 SS G_CDS: 0.59 Total: -85.71 kcal Atomic # 8 Polarization: -93.09 SS G_CDS: -4.42 Total: -97.52 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Atomic # 16 Polarization: 98.06 SS G_CDS: -0.26 Total: 97.80 kcal Total: -86.83 -0.81 -87.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696294002.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.595 kcal (2) G-P(sol) polarization free energy of solvation -86.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds