Wall clock time and date at job start Mon Mar 30 2020 02:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 108.89848 * 2 1 4 4 C 1.53623 * 108.82512 * 241.37789 * 2 1 3 5 5 S 1.83243 * 105.34333 * 241.70330 * 4 2 1 6 6 O 1.42094 * 109.61354 * 133.32744 * 5 4 2 7 7 O 1.42104 * 109.61376 * 267.28288 * 5 4 2 8 8 C 1.83843 * 95.32211 * 20.30258 * 5 4 2 9 9 C 1.52975 * 108.93105 * 118.68051 * 2 1 3 10 10 H 1.08996 * 109.65525 * 210.38569 * 9 2 1 11 11 N 1.46898 * 109.65042 * 330.83571 * 9 2 1 12 12 C 1.46903 * 110.99813 * 204.99562 * 11 9 2 13 13 C 1.50694 * 109.47330 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00179 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00472 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99350 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00608 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47339 * 179.97438 * 17 15 13 19 19 H 1.48493 * 109.47239 * 300.00306 * 17 15 13 20 20 H 1.48504 * 109.46636 * 59.99865 * 17 15 13 21 21 H 1.08997 * 109.47669 * 301.31569 * 1 2 3 22 22 H 1.09000 * 109.46967 * 61.32151 * 1 2 3 23 23 H 1.09006 * 109.47168 * 181.31377 * 1 2 3 24 24 H 1.08997 * 110.26866 * 0.66607 * 4 2 1 25 25 H 1.09000 * 110.26706 * 122.64357 * 4 2 1 26 26 H 1.09002 * 111.07946 * 206.09097 * 8 5 4 27 27 H 1.08998 * 111.07395 * 82.05593 * 8 5 4 28 28 H 1.00905 * 111.00182 * 81.04709 * 11 9 2 29 29 H 1.09005 * 109.46786 * 60.00475 * 12 11 9 30 30 H 1.08998 * 109.47526 * 300.00194 * 12 11 9 31 31 H 0.97005 * 119.99661 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8830 1.0312 0.0000 4 6 2.0257 -0.6965 -1.2764 5 16 2.9750 -2.1527 -0.6966 6 8 2.5874 -3.3010 -1.4384 7 8 4.3487 -1.8094 -0.5760 8 6 2.2036 -2.2061 0.9713 9 6 2.0263 -0.6945 1.2695 10 1 2.9828 -0.2675 1.5709 11 7 1.0439 -0.5154 2.3468 12 6 1.6840 -0.6165 3.6652 13 6 0.6476 -0.4274 4.7427 14 1 -0.3836 -0.2502 4.4750 15 6 1.0157 -0.4806 6.0703 16 7 2.2714 -0.6969 6.3963 17 14 -0.2688 -0.2454 7.4060 18 1 0.3783 -0.3478 8.7386 19 1 -0.8947 1.0933 7.2607 20 1 -1.3113 -1.2955 7.2805 21 1 -0.3634 0.5341 0.8779 22 1 -0.3633 0.4932 -0.9016 23 1 -0.3634 -1.0274 0.0236 24 1 1.1798 -1.0153 -1.8854 25 1 2.6696 -0.0267 -1.8463 26 1 2.8699 -2.6733 1.6966 27 1 1.2405 -2.7155 0.9415 28 1 0.2875 -1.1777 2.2603 29 1 2.4488 0.1547 3.7578 30 1 2.1439 -1.5990 3.7714 31 1 2.5305 -0.7339 7.3304 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711708914.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:51 Heat of formation + Delta-G solvation = -99.128069 kcal Electronic energy + Delta-G solvation = -14919.413099 eV Core-core repulsion = 12326.864528 eV Total energy + Delta-G solvation = -2592.548570 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.37625 -38.09375 -37.07493 -35.64995 -33.86917 -30.83922 -28.85895 -27.63567 -25.05895 -23.62358 -20.65237 -19.86101 -18.70227 -17.67205 -17.29503 -16.98623 -16.59277 -16.14426 -15.50204 -15.22458 -14.65041 -14.32721 -13.95102 -13.65668 -13.43409 -13.24138 -13.16187 -13.08103 -12.79468 -12.64401 -12.52678 -12.10101 -12.00088 -11.62794 -11.52022 -11.28607 -11.19201 -10.64298 -9.11511 -8.22139 -6.32941 -0.89550 1.42497 1.45069 1.53031 1.55905 2.40027 2.62564 3.00966 3.12177 3.28265 3.57136 3.82999 3.91348 3.99173 4.06398 4.49637 4.69563 4.79243 4.82393 4.86837 5.09852 5.21899 5.30270 5.37241 5.61544 5.67174 6.01650 6.40065 6.69763 6.89816 7.38158 8.89026 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.044855 B = 0.006203 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.076975 B = 4513.048892 C = 4829.813872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.073 4.073 3 H 0.102 0.898 4 C -0.549 4.549 5 S 2.396 3.604 6 O -0.975 6.975 7 O -0.977 6.977 8 C -0.611 4.611 9 C 0.081 3.919 10 H 0.079 0.921 11 N -0.658 5.658 12 C 0.202 3.798 13 C -0.535 4.535 14 H 0.069 0.931 15 C 0.001 3.999 16 N -0.935 5.935 17 Si 0.971 3.029 18 H -0.287 1.287 19 H -0.268 1.268 20 H -0.266 1.266 21 H 0.065 0.935 22 H 0.075 0.925 23 H 0.060 0.940 24 H 0.167 0.833 25 H 0.162 0.838 26 H 0.121 0.879 27 H 0.153 0.847 28 H 0.345 0.655 29 H 0.001 0.999 30 H -0.033 1.033 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.627 0.349 -14.814 15.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.093 4.093 3 H 0.120 0.880 4 C -0.682 4.682 5 S 2.583 3.417 6 O -0.971 6.971 7 O -0.974 6.974 8 C -0.743 4.743 9 C -0.032 4.032 10 H 0.097 0.903 11 N -0.289 5.289 12 C 0.075 3.925 13 C -0.573 4.573 14 H 0.087 0.913 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.795 3.205 18 H -0.212 1.212 19 H -0.193 1.193 20 H -0.191 1.191 21 H 0.084 0.916 22 H 0.094 0.906 23 H 0.079 0.921 24 H 0.185 0.815 25 H 0.180 0.820 26 H 0.140 0.860 27 H 0.171 0.829 28 H 0.164 0.836 29 H 0.019 0.981 30 H -0.015 1.015 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.753 0.413 -15.120 15.374 hybrid contribution -0.403 -0.555 1.625 1.764 sum -3.155 -0.143 -13.495 13.859 Atomic orbital electron populations 1.21885 0.92578 1.02832 1.03078 1.21112 0.99279 1.01049 0.87835 0.88007 1.30293 1.15130 1.16333 1.06444 1.08678 0.76211 0.78220 0.78580 1.93542 1.84742 1.49114 1.69740 1.93567 1.32349 1.85141 1.86339 1.31268 1.14799 1.05720 1.22484 1.22274 0.97441 0.89221 0.94264 0.90290 1.60607 1.10672 1.56232 1.01355 1.19301 0.94045 0.93164 0.86039 1.21537 0.95729 1.48763 0.91282 0.91301 1.25935 0.97520 0.94827 1.01482 1.70086 1.18256 1.50625 1.18544 0.85411 0.78639 0.79151 0.77250 1.21229 1.19254 1.19113 0.91611 0.90632 0.92098 0.81494 0.82037 0.86034 0.82935 0.83591 0.98117 1.01545 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 7.83 71.98 0.56 -2.27 16 2 C -0.07 -1.50 3.15 -10.59 -0.03 -1.54 16 3 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 4 C -0.55 -8.20 6.93 72.19 0.50 -7.70 16 5 S 2.40 55.84 6.05 -56.49 -0.34 55.50 16 6 O -0.97 -27.94 18.16 -127.52 -2.32 -30.25 16 7 O -0.98 -30.67 18.16 -127.52 -2.32 -32.98 16 8 C -0.61 -15.92 6.80 72.70 0.49 -15.42 16 9 C 0.08 2.39 2.64 45.63 0.12 2.51 16 10 H 0.08 2.59 7.80 -2.39 -0.02 2.57 16 11 N -0.66 -24.48 4.69 -491.92 -2.30 -26.78 16 12 C 0.20 10.16 5.25 85.55 0.45 10.61 16 13 C -0.53 -29.06 9.32 25.60 0.24 -28.83 16 14 H 0.07 3.57 7.81 -2.91 -0.02 3.55 16 15 C 0.00 0.03 5.46 84.66 0.46 0.50 16 16 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 17 Si 0.97 43.12 29.54 68.60 2.03 45.15 16 18 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 H 0.06 1.61 7.17 -2.39 -0.02 1.59 16 22 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.06 1.06 8.09 -2.38 -0.02 1.04 16 24 H 0.17 1.64 7.62 -2.39 -0.02 1.62 16 25 H 0.16 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 27 H 0.15 3.36 7.90 -2.39 -0.02 3.34 16 28 H 0.34 11.80 7.72 -89.69 -0.69 11.11 16 29 H 0.00 0.04 8.06 -2.38 -0.02 0.02 16 30 H -0.03 -1.79 8.06 -2.39 -0.02 -1.81 16 31 H 0.26 14.85 8.31 -92.70 -0.77 14.08 16 Total: -1.00 -72.95 269.69 -1.74 -74.70 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.43 Total: 12.12 kcal Atomic # 6 Polarization: -44.94 SS G_CDS: 2.80 Total: -42.15 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -2.02 Total: -82.08 kcal Atomic # 8 Polarization: -58.60 SS G_CDS: -4.63 Total: -63.23 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 55.84 SS G_CDS: -0.34 Total: 55.50 kcal Total: -72.95 -1.74 -74.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711708914.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.430 kcal (2) G-P(sol) polarization free energy of solvation -72.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds