Wall clock time and date at job start Mon Mar 30 2020 03:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42109 * 108.57487 * 2 1 4 4 O 1.42097 * 108.58349 * 228.97170 * 2 1 3 5 5 C 1.81398 * 101.92165 * 114.48102 * 2 1 3 6 6 C 1.53782 * 113.61670 * 180.02562 * 5 2 1 7 7 C 1.53781 * 87.08260 * 220.02158 * 6 5 2 8 8 N 1.46900 * 113.61428 * 270.79940 * 7 6 5 9 9 C 1.46895 * 110.99924 * 203.46824 * 8 7 6 10 10 C 1.50700 * 109.47106 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00413 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00163 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99896 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99943 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47338 * 89.99563 * 14 12 10 16 16 H 1.48501 * 109.46772 * 209.99330 * 14 12 10 17 17 H 1.48497 * 109.47250 * 329.99079 * 14 12 10 18 18 C 1.53786 * 87.17350 * 25.39213 * 7 6 5 19 19 H 1.08992 * 109.47494 * 305.51481 * 1 2 3 20 20 H 1.08996 * 109.46822 * 65.51958 * 1 2 3 21 21 H 1.09007 * 109.47013 * 185.51345 * 1 2 3 22 22 H 1.09002 * 112.84920 * 311.20176 * 5 2 1 23 23 H 1.09001 * 113.61250 * 105.46975 * 6 5 2 24 24 H 1.08997 * 113.61225 * 334.56816 * 6 5 2 25 25 H 1.09002 * 113.61445 * 139.98212 * 7 6 5 26 26 H 1.00902 * 110.99925 * 79.51829 * 8 7 6 27 27 H 1.08994 * 109.47448 * 300.00310 * 9 8 7 28 28 H 1.09001 * 109.47145 * 60.00387 * 9 8 7 29 29 H 0.96992 * 120.00048 * 180.02562 * 13 12 10 30 30 H 1.08993 * 113.61491 * 89.15923 * 18 7 6 31 31 H 1.09000 * 113.61138 * 220.06261 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3471 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7355 1.6153 6 6 3.6946 -0.8641 1.8993 7 6 3.3800 -2.2338 2.5235 8 7 3.0655 -2.1689 3.9570 9 6 3.3184 -3.4600 4.6104 10 6 2.9846 -3.3551 6.0762 11 1 2.6213 -2.4225 6.4820 12 6 3.1440 -4.4495 6.8997 13 7 3.5868 -5.5851 6.4058 14 14 2.7295 -4.3196 8.7164 15 1 1.3045 -4.6810 8.9262 16 1 3.5943 -5.2473 9.4889 17 1 2.9603 -2.9273 9.1785 18 6 2.1355 -2.2742 1.6210 19 1 -0.3634 0.5969 0.8364 20 1 -0.3633 0.4258 -0.9353 21 1 -0.3633 -1.0230 0.0987 22 1 1.6288 -0.2759 2.4298 23 1 4.0677 -0.1328 2.6162 24 1 4.3052 -0.9248 0.9984 25 1 4.1166 -3.0014 2.2862 26 1 2.1135 -1.8691 4.1051 27 1 2.6965 -4.2280 4.1506 28 1 4.3691 -3.7260 4.4949 29 1 3.6986 -6.3550 6.9849 30 1 2.3190 -2.7210 0.6439 31 1 1.2518 -2.6796 2.1137 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716123337.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:17 Heat of formation + Delta-G solvation = -49.682847 kcal Electronic energy + Delta-G solvation = -14519.141400 eV Core-core repulsion = 11928.736935 eV Total energy + Delta-G solvation = -2590.404465 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.00745 -36.98784 -36.05000 -33.89070 -31.78318 -29.75856 -26.80644 -25.66368 -24.57705 -21.82077 -19.48579 -18.62366 -17.29562 -16.37667 -16.18091 -15.95461 -15.05599 -14.73961 -13.97642 -13.65194 -13.44156 -13.34243 -12.85336 -12.57795 -12.30916 -12.12396 -12.04195 -11.92519 -11.51198 -11.12250 -10.89272 -10.81884 -10.63051 -10.46752 -10.10885 -9.73658 -9.22202 -8.56363 -7.45200 -6.10141 -4.12831 -0.03357 2.67523 3.27074 3.33838 3.38000 3.52767 3.82530 4.31497 4.34916 4.43480 4.63213 4.80811 4.86794 4.98416 5.25641 5.33015 5.46677 5.63455 5.75823 5.91152 6.10477 6.15085 6.33018 7.15162 7.32362 7.70007 8.04032 8.26609 8.49139 8.96013 9.52559 11.00860 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.058939 B = 0.004928 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.955265 B = 5680.604404 C = 5777.912157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.420 3.580 3 O -0.947 6.947 4 O -0.942 6.942 5 C -0.591 4.591 6 C -0.104 4.104 7 C 0.084 3.916 8 N -0.669 5.669 9 C 0.193 3.807 10 C -0.518 4.518 11 H 0.062 0.938 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.900 3.100 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.147 4.147 19 H 0.127 0.873 20 H 0.123 0.877 21 H 0.128 0.872 22 H 0.150 0.850 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.331 0.669 27 H -0.011 1.011 28 H 0.031 0.969 29 H 0.262 0.738 30 H 0.101 0.899 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.238 8.649 -11.282 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.806 4.806 2 S 2.603 3.397 3 O -0.944 6.944 4 O -0.939 6.939 5 C -0.702 4.702 6 C -0.143 4.143 7 C -0.029 4.029 8 N -0.298 5.298 9 C 0.067 3.933 10 C -0.557 4.557 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.728 3.272 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.188 4.188 19 H 0.145 0.855 20 H 0.142 0.858 21 H 0.147 0.853 22 H 0.168 0.832 23 H 0.113 0.887 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.149 0.851 27 H 0.007 0.993 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.011 9.037 -11.706 15.615 hybrid contribution -1.710 -0.750 1.270 2.258 sum -6.721 8.287 -10.436 14.925 Atomic orbital electron populations 1.30245 1.27568 1.11519 1.11239 1.07860 0.78107 0.75531 0.78165 1.93572 1.79022 1.34809 1.86973 1.93574 1.79045 1.67051 1.54267 1.31625 1.08727 1.08683 1.21156 1.22813 0.89013 1.00896 1.01597 1.22469 0.95596 0.95595 0.89238 1.60495 1.29096 1.33789 1.06410 1.19628 0.96778 0.83422 0.93481 1.21165 1.44160 0.97242 0.93135 0.91971 1.24985 0.95216 0.95208 0.99069 1.69953 1.46073 1.01659 1.35874 0.86470 0.78132 0.78026 0.84612 1.20726 1.21178 1.19761 1.23561 1.02482 0.89276 1.03438 0.85467 0.85799 0.85329 0.83236 0.88743 0.89393 0.89431 0.85111 0.99267 0.95128 0.92809 0.88017 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -4.56 10.62 101.05 1.07 -3.49 16 2 S 2.42 25.48 5.34 -107.50 -0.57 24.90 16 3 O -0.95 -13.30 18.10 -57.83 -1.05 -14.34 16 4 O -0.94 -12.92 17.20 -57.83 -0.99 -13.92 16 5 C -0.59 -6.59 3.92 -25.82 -0.10 -6.69 16 6 C -0.10 -1.40 7.47 -25.92 -0.19 -1.60 16 7 C 0.08 1.37 4.26 -66.90 -0.28 1.08 16 8 N -0.67 -13.29 6.55 -107.13 -0.70 -13.99 16 9 C 0.19 4.84 5.29 -4.98 -0.03 4.81 16 10 C -0.52 -14.23 9.32 -34.44 -0.32 -14.55 16 11 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -26.20 13.29 55.43 0.74 -25.47 16 14 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 18 C -0.15 -1.87 7.16 -25.82 -0.18 -2.05 16 19 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 20 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.13 0.74 8.14 -51.92 -0.42 0.31 16 22 H 0.15 1.41 8.05 -51.93 -0.42 1.00 16 23 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 24 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 25 H 0.09 1.48 7.88 -51.93 -0.41 1.07 16 26 H 0.33 6.09 8.09 -39.29 -0.32 5.78 16 27 H -0.01 -0.28 8.14 -51.93 -0.42 -0.70 16 28 H 0.03 0.83 8.13 -51.93 -0.42 0.41 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.10 1.20 7.37 -51.93 -0.38 0.82 16 31 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 LS Contribution 277.38 15.07 4.18 4.18 Total: -1.00 -34.21 277.38 -8.01 -42.22 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.45 Total: 1.24 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -0.14 Total: -21.00 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.03 Total: -39.46 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -2.04 Total: -28.26 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 25.48 SS G_CDS: -0.57 Total: 24.90 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -34.21 -8.01 -42.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716123337.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.467 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds