Wall clock time and date at job start Mon Mar 30 2020 03:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42109 * 108.57487 * 2 1 4 4 O 1.42097 * 108.58349 * 228.97170 * 2 1 3 5 5 C 1.81398 * 101.92165 * 114.48102 * 2 1 3 6 6 C 1.53782 * 113.61670 * 180.02562 * 5 2 1 7 7 C 1.53781 * 87.08260 * 220.02158 * 6 5 2 8 8 N 1.46900 * 113.61428 * 270.79940 * 7 6 5 9 9 C 1.46895 * 110.99924 * 203.46824 * 8 7 6 10 10 C 1.50700 * 109.47106 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00413 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00163 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99896 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99943 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47338 * 89.99563 * 14 12 10 16 16 H 1.48501 * 109.46772 * 209.99330 * 14 12 10 17 17 H 1.48497 * 109.47250 * 329.99079 * 14 12 10 18 18 C 1.53786 * 87.17350 * 25.39213 * 7 6 5 19 19 H 1.08992 * 109.47494 * 305.51481 * 1 2 3 20 20 H 1.08996 * 109.46822 * 65.51958 * 1 2 3 21 21 H 1.09007 * 109.47013 * 185.51345 * 1 2 3 22 22 H 1.09002 * 112.84920 * 311.20176 * 5 2 1 23 23 H 1.09001 * 113.61250 * 105.46975 * 6 5 2 24 24 H 1.08997 * 113.61225 * 334.56816 * 6 5 2 25 25 H 1.09002 * 113.61445 * 139.98212 * 7 6 5 26 26 H 1.00902 * 110.99925 * 79.51829 * 8 7 6 27 27 H 1.08994 * 109.47448 * 300.00310 * 9 8 7 28 28 H 1.09001 * 109.47145 * 60.00387 * 9 8 7 29 29 H 0.96992 * 120.00048 * 180.02562 * 13 12 10 30 30 H 1.08993 * 113.61491 * 89.15923 * 18 7 6 31 31 H 1.09000 * 113.61138 * 220.06261 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3471 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7355 1.6153 6 6 3.6946 -0.8641 1.8993 7 6 3.3800 -2.2338 2.5235 8 7 3.0655 -2.1689 3.9570 9 6 3.3184 -3.4600 4.6104 10 6 2.9846 -3.3551 6.0762 11 1 2.6213 -2.4225 6.4820 12 6 3.1440 -4.4495 6.8997 13 7 3.5868 -5.5851 6.4058 14 14 2.7295 -4.3196 8.7164 15 1 1.3045 -4.6810 8.9262 16 1 3.5943 -5.2473 9.4889 17 1 2.9603 -2.9273 9.1785 18 6 2.1355 -2.2742 1.6210 19 1 -0.3634 0.5969 0.8364 20 1 -0.3633 0.4258 -0.9353 21 1 -0.3633 -1.0230 0.0987 22 1 1.6288 -0.2759 2.4298 23 1 4.0677 -0.1328 2.6162 24 1 4.3052 -0.9248 0.9984 25 1 4.1166 -3.0014 2.2862 26 1 2.1135 -1.8691 4.1051 27 1 2.6965 -4.2280 4.1506 28 1 4.3691 -3.7260 4.4949 29 1 3.6986 -6.3550 6.9849 30 1 2.3190 -2.7210 0.6439 31 1 1.2518 -2.6796 2.1137 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716123337.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:17 Heat of formation + Delta-G solvation = -77.224021 kcal Electronic energy + Delta-G solvation = -14520.335675 eV Core-core repulsion = 11928.736935 eV Total energy + Delta-G solvation = -2591.598740 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.20413 -37.95316 -37.00951 -35.76201 -33.65949 -30.36276 -28.64803 -26.73388 -25.91654 -23.75935 -20.67533 -19.59111 -18.55343 -18.12519 -17.07903 -16.86517 -16.62446 -16.26780 -15.49364 -14.95749 -14.57911 -14.05282 -13.90774 -13.75138 -13.60866 -13.53300 -13.35039 -13.09375 -12.97835 -12.68027 -12.57155 -12.06112 -11.92998 -11.77640 -11.66332 -11.34268 -10.77361 -10.66094 -9.11066 -8.22646 -6.33898 -0.85818 1.42158 1.43920 1.55410 1.88361 2.40133 2.66634 2.93875 3.11286 3.32357 3.46450 3.53125 3.90492 4.10773 4.14853 4.30995 4.57791 4.60683 4.79807 4.90762 4.99137 5.01911 5.09573 5.20310 5.30245 5.62737 6.02517 6.45613 6.73487 6.91193 7.37508 8.88843 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.058939 B = 0.004928 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.955265 B = 5680.604404 C = 5777.912157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.636 4.636 2 S 2.434 3.566 3 O -0.985 6.985 4 O -0.978 6.978 5 C -0.582 4.582 6 C -0.107 4.107 7 C 0.060 3.940 8 N -0.668 5.668 9 C 0.208 3.792 10 C -0.537 4.537 11 H 0.066 0.934 12 C 0.002 3.998 13 N -0.934 5.934 14 Si 0.973 3.027 15 H -0.270 1.270 16 H -0.284 1.284 17 H -0.265 1.265 18 C -0.137 4.137 19 H 0.152 0.848 20 H 0.140 0.860 21 H 0.149 0.851 22 H 0.171 0.829 23 H 0.089 0.911 24 H 0.098 0.902 25 H 0.068 0.932 26 H 0.341 0.659 27 H -0.032 1.032 28 H -0.002 1.002 29 H 0.265 0.735 30 H 0.111 0.889 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.339 9.783 -11.063 16.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.789 4.789 2 S 2.621 3.379 3 O -0.982 6.982 4 O -0.976 6.976 5 C -0.691 4.691 6 C -0.146 4.146 7 C -0.052 4.052 8 N -0.298 5.298 9 C 0.081 3.919 10 C -0.575 4.575 11 H 0.084 0.916 12 C -0.196 4.196 13 N -0.574 5.574 14 Si 0.797 3.203 15 H -0.195 1.195 16 H -0.210 1.210 17 H -0.190 1.190 18 C -0.177 4.177 19 H 0.170 0.830 20 H 0.158 0.842 21 H 0.167 0.833 22 H 0.189 0.811 23 H 0.107 0.893 24 H 0.116 0.884 25 H 0.086 0.914 26 H 0.160 0.840 27 H -0.014 1.014 28 H 0.016 0.984 29 H 0.074 0.926 30 H 0.129 0.871 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.071 10.188 -11.501 16.914 hybrid contribution -1.082 -1.097 1.132 1.912 sum -8.153 9.091 -10.369 16.020 Atomic orbital electron populations 1.30056 1.21786 1.13703 1.13363 1.07207 0.80059 0.73880 0.76749 1.93527 1.81233 1.36325 1.87092 1.93528 1.81186 1.67611 1.55248 1.31593 1.06920 1.07625 1.22961 1.22781 0.91450 0.98738 1.01631 1.22595 0.97534 0.97137 0.87968 1.60329 1.29911 1.30785 1.08802 1.19236 0.94196 0.85241 0.93263 1.21556 1.44106 0.97479 0.94369 0.91596 1.25936 0.94884 0.94748 1.04054 1.70085 1.47105 1.02497 1.37720 0.85333 0.78237 0.78225 0.78491 1.19541 1.20979 1.18954 1.23449 1.00642 0.90787 1.02859 0.82994 0.84158 0.83296 0.81132 0.89271 0.88409 0.91368 0.84001 1.01431 0.98418 0.92624 0.87078 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -5.97 10.62 113.37 1.20 -4.77 16 2 S 2.43 46.12 5.34 -56.49 -0.30 45.81 16 3 O -0.98 -26.25 18.10 -127.37 -2.31 -28.55 16 4 O -0.98 -25.55 17.20 -127.37 -2.19 -27.74 16 5 C -0.58 -11.84 3.92 31.18 0.12 -11.72 16 6 C -0.11 -2.85 7.47 31.12 0.23 -2.62 16 7 C 0.06 1.97 4.26 45.44 0.19 2.16 16 8 N -0.67 -26.80 6.55 -492.86 -3.23 -30.03 16 9 C 0.21 10.78 5.29 85.56 0.45 11.23 16 10 C -0.54 -29.73 9.32 25.60 0.24 -29.49 16 11 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 12 C 0.00 0.12 5.46 84.66 0.46 0.58 16 13 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 14 Si 0.97 43.25 29.54 68.60 2.03 45.27 16 15 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 18 C -0.14 -3.31 7.16 31.18 0.22 -3.09 16 19 H 0.15 0.82 8.14 -2.39 -0.02 0.80 16 20 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 21 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.17 2.71 8.05 -2.39 -0.02 2.69 16 23 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.10 2.38 8.10 -2.39 -0.02 2.36 16 25 H 0.07 2.45 7.88 -2.39 -0.02 2.43 16 26 H 0.34 12.30 8.09 -89.69 -0.73 11.58 16 27 H -0.03 -1.76 8.14 -2.39 -0.02 -1.78 16 28 H 0.00 -0.13 8.13 -2.39 -0.02 -0.15 16 29 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 30 H 0.11 2.49 7.37 -2.39 -0.02 2.47 16 31 H 0.09 2.08 8.09 -2.39 -0.02 2.06 16 Total: -1.00 -74.83 277.38 -2.20 -77.02 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.39 Total: 11.17 kcal Atomic # 6 Polarization: -40.84 SS G_CDS: 3.13 Total: -37.71 kcal Atomic # 7 Polarization: -82.33 SS G_CDS: -2.95 Total: -85.27 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -4.50 Total: -56.30 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: 46.12 SS G_CDS: -0.30 Total: 45.81 kcal Total: -74.83 -2.20 -77.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716123337.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.203 kcal (2) G-P(sol) polarization free energy of solvation -74.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds