Wall clock time and date at job start Mon Mar 30 2020 03:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36932 * 120.00189 * 2 1 4 4 H 1.08001 * 120.00413 * 157.10486 * 3 2 1 5 5 C 1.38809 * 120.00082 * 337.11068 * 3 2 1 6 6 N 1.31618 * 119.99772 * 349.25299 * 5 3 2 7 7 Si 1.86804 * 120.00256 * 169.26109 * 5 3 2 8 8 H 1.48492 * 109.47246 * 359.97438 * 7 5 3 9 9 H 1.48505 * 109.47057 * 119.99514 * 7 5 3 10 10 H 1.48495 * 109.46978 * 239.99311 * 7 5 3 11 11 C 1.46500 * 119.99811 * 179.97438 * 2 1 3 12 12 C 1.53779 * 113.61887 * 323.82644 * 11 2 1 13 13 C 1.53958 * 87.01875 * 89.22576 * 12 11 2 14 14 S 1.81399 * 113.66425 * 139.93406 * 13 12 11 15 15 C 1.81411 * 101.92217 * 82.43959 * 14 13 12 16 16 O 1.42099 * 108.57795 * 196.92504 * 14 13 12 17 17 O 1.42102 * 108.58020 * 327.95578 * 14 13 12 18 18 C 1.53780 * 87.11236 * 25.36339 * 13 12 11 19 19 H 1.08996 * 109.47615 * 213.72194 * 1 2 3 20 20 H 1.09000 * 109.47188 * 333.72621 * 1 2 3 21 21 H 1.09004 * 109.46665 * 93.72342 * 1 2 3 22 22 H 0.97009 * 119.99930 * 180.02562 * 6 5 3 23 23 H 1.08996 * 112.84834 * 192.62479 * 11 2 1 24 24 H 1.08993 * 113.61441 * 203.74487 * 12 11 2 25 25 H 1.08998 * 113.60913 * 334.64818 * 12 11 2 26 26 H 1.09001 * 113.61025 * 270.79847 * 13 12 11 27 27 H 1.09000 * 109.46597 * 59.99678 * 15 14 13 28 28 H 1.08994 * 109.47035 * 179.97438 * 15 14 13 29 29 H 1.08999 * 109.47106 * 300.00196 * 15 14 13 30 30 H 1.08995 * 113.61158 * 220.08928 * 18 13 12 31 31 H 1.09003 * 113.61080 * 89.18441 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1659 1.2227 0.3639 5 6 1.5377 2.3407 -0.4676 6 7 0.3874 2.2648 -1.1028 7 14 2.3466 4.0023 -0.1954 8 1 3.6234 3.8168 0.5396 9 1 2.6188 4.6413 -1.5080 10 1 1.4402 4.8699 0.5989 11 6 2.1974 -1.2688 0.0006 12 6 1.5205 -2.3706 0.8327 13 6 0.7545 -2.7543 -0.4465 14 16 0.5808 -4.5446 -0.6818 15 6 -0.8512 -4.9230 0.3656 16 8 0.2289 -4.7912 -2.0362 17 8 1.7243 -5.1863 -0.1341 18 6 1.9219 -2.1396 -1.2366 19 1 -0.3634 -0.8547 0.5705 20 1 -0.3633 0.9215 0.4549 21 1 -0.3633 -0.0667 -1.0256 22 1 -0.0401 3.0719 -1.4299 23 1 3.2579 -1.1451 0.2200 24 1 2.2086 -3.1423 1.1776 25 1 0.8806 -1.9867 1.6272 26 1 -0.1864 -2.2180 -0.5695 27 1 -1.7162 -4.3596 0.0155 28 1 -1.0676 -5.9900 0.3135 29 1 -0.6305 -4.6465 1.3965 30 1 1.6056 -1.5696 -2.1102 31 1 2.7200 -2.8481 -1.4584 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716138136.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:51 Heat of formation + Delta-G solvation = -16.124034 kcal Electronic energy + Delta-G solvation = -15187.853602 eV Core-core repulsion = 12598.904357 eV Total energy + Delta-G solvation = -2588.949245 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 233.087 amu Computer time = 6.15 seconds Orbital eigenvalues (eV) -38.80672 -36.75065 -35.81125 -34.05737 -30.47089 -29.55804 -26.63389 -25.36150 -25.06830 -22.04946 -18.79929 -18.52754 -17.15296 -16.48345 -15.91131 -15.71735 -15.29464 -14.33729 -13.61982 -13.29144 -13.17334 -13.00173 -12.49717 -12.38823 -12.18910 -11.89051 -11.78658 -11.43456 -11.12758 -10.90712 -10.83617 -10.76089 -10.24735 -10.19250 -9.94285 -9.88518 -9.31752 -8.60549 -6.87195 -5.84092 -3.29255 0.22498 2.93778 3.32821 3.40360 3.42389 3.78544 4.10209 4.39656 4.62681 4.80570 4.84433 5.09865 5.16926 5.28518 5.59057 5.64069 5.65665 5.96627 6.13141 6.22200 6.48647 6.56438 6.63438 6.87857 7.26620 7.58500 7.73314 8.31714 9.13944 9.76124 10.24447 11.22397 Molecular weight = 233.09amu Principal moments of inertia in cm(-1) A = 0.059722 B = 0.006540 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.724752 B = 4280.155582 C = 4378.447110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.154 3.846 2 N -0.577 5.577 3 C -0.258 4.258 4 H 0.073 0.927 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.909 3.091 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.181 3.819 12 C -0.137 4.137 13 C -0.586 4.586 14 S 2.411 3.589 15 C -0.657 4.657 16 O -0.951 6.951 17 O -0.947 6.947 18 C -0.138 4.138 19 H 0.001 0.999 20 H 0.062 0.938 21 H 0.019 0.981 22 H 0.253 0.747 23 H 0.079 0.921 24 H 0.097 0.903 25 H 0.082 0.918 26 H 0.154 0.846 27 H 0.126 0.874 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.087 0.913 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 -10.666 3.934 11.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.296 5.296 3 C -0.387 4.387 4 H 0.090 0.910 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.739 3.261 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.069 3.931 12 C -0.178 4.178 13 C -0.698 4.698 14 S 2.596 3.404 15 C -0.806 4.806 16 O -0.948 6.948 17 O -0.944 6.944 18 C -0.181 4.181 19 H 0.019 0.981 20 H 0.080 0.920 21 H 0.038 0.962 22 H 0.064 0.936 23 H 0.097 0.903 24 H 0.115 0.885 25 H 0.101 0.899 26 H 0.171 0.829 27 H 0.144 0.856 28 H 0.139 0.861 29 H 0.146 0.854 30 H 0.105 0.895 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.635 -11.103 3.355 11.713 hybrid contribution -0.472 1.331 0.387 1.464 sum -2.107 -9.772 3.743 10.674 Atomic orbital electron populations 1.20968 0.82717 0.97518 0.97872 1.43733 1.01790 0.99849 1.84261 1.19315 0.98475 0.85139 1.35818 0.90951 1.25057 0.97691 0.98789 0.98092 1.70074 1.17859 1.27331 1.39992 0.86110 0.78687 0.83831 0.77453 1.20210 1.21632 1.21591 1.21096 0.95587 0.85190 0.91242 1.23367 0.99292 1.01142 0.93997 1.31710 1.08735 1.20599 1.08725 1.08102 0.76871 0.79297 0.76111 1.30247 1.21764 1.11423 1.17153 1.93554 1.84312 1.84631 1.32281 1.93546 1.47003 1.73478 1.80421 1.23472 0.93257 0.99871 1.01472 0.98065 0.91980 0.96237 0.93634 0.90303 0.88464 0.89893 0.82876 0.85559 0.86086 0.85427 0.89478 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.52 7.27 59.85 0.44 3.95 16 2 N -0.58 -13.71 3.13 -172.56 -0.54 -14.25 16 3 C -0.26 -6.83 9.68 -15.06 -0.15 -6.98 16 4 H 0.07 1.87 7.85 -52.49 -0.41 1.45 16 5 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 6 N -0.91 -25.63 10.63 55.49 0.59 -25.04 16 7 Si 0.91 21.27 29.57 -169.99 -5.03 16.25 16 8 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 11 C 0.18 3.50 4.59 -67.12 -0.31 3.19 16 12 C -0.14 -2.09 6.85 -25.83 -0.18 -2.27 16 13 C -0.59 -8.73 3.51 -25.83 -0.09 -8.83 16 14 S 2.41 32.02 5.34 -107.50 -0.57 31.45 16 15 C -0.66 -6.03 10.62 101.05 1.07 -4.95 16 16 O -0.95 -16.09 18.10 -57.83 -1.05 -17.14 16 17 O -0.95 -14.99 17.20 -57.83 -0.99 -15.98 16 18 C -0.14 -2.44 7.35 -25.92 -0.19 -2.63 16 19 H 0.00 0.02 5.10 -51.93 -0.26 -0.24 16 20 H 0.06 1.58 6.65 -51.93 -0.35 1.23 16 21 H 0.02 0.48 7.75 -51.93 -0.40 0.07 16 22 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 23 H 0.08 1.49 8.05 -51.93 -0.42 1.07 16 24 H 0.10 1.31 7.37 -51.93 -0.38 0.92 16 25 H 0.08 1.22 7.22 -51.93 -0.37 0.85 16 26 H 0.15 2.26 5.65 -51.93 -0.29 1.97 16 27 H 0.13 0.99 8.14 -51.92 -0.42 0.57 16 28 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.13 0.97 8.14 -51.92 -0.42 0.55 16 30 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 31 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 LS Contribution 264.88 15.07 3.99 3.99 Total: -1.00 -33.11 264.88 -7.23 -40.35 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -4.14 Total: -1.06 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 0.51 Total: -18.55 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.05 Total: -39.29 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -2.04 Total: -33.12 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.25 kcal Atomic # 16 Polarization: 32.02 SS G_CDS: -0.57 Total: 31.45 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.11 -7.23 -40.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716138136.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.223 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.15 seconds