Wall clock time and date at job start Mon Mar 30 2020 03:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38238 * 119.99571 * 269.72634 * 3 2 1 5 5 C 1.38240 * 119.99339 * 179.76368 * 4 3 2 6 6 C 1.38235 * 120.00243 * 0.48625 * 5 4 3 7 7 C 1.50696 * 119.99815 * 179.76576 * 6 5 4 8 8 N 1.46494 * 109.47352 * 270.02390 * 7 6 5 9 9 C 1.34776 * 120.00276 * 180.02562 * 8 7 6 10 10 O 1.21693 * 119.99931 * 359.97438 * 9 8 7 11 11 C 1.46375 * 120.00205 * 179.97438 * 9 8 7 12 12 H 1.07998 * 120.00047 * 359.97438 * 11 9 8 13 13 C 1.40053 * 119.99609 * 179.97438 * 11 9 8 14 14 N 1.30668 * 120.00552 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99371 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47418 * 90.00127 * 15 13 11 17 17 H 1.48507 * 109.47103 * 209.99991 * 15 13 11 18 18 H 1.48501 * 109.47617 * 329.99762 * 15 13 11 19 19 C 1.38230 * 119.99908 * 359.78566 * 6 5 4 20 20 C 1.38234 * 120.00207 * 89.99764 * 3 2 1 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 25 25 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 26 26 H 1.07997 * 120.00032 * 359.97438 * 4 3 2 27 27 H 1.08004 * 119.99237 * 180.24848 * 5 4 3 28 28 H 1.09001 * 109.47324 * 30.02439 * 7 6 5 29 29 H 1.09004 * 109.47043 * 150.02071 * 7 6 5 30 30 H 0.97002 * 119.99957 * 359.97438 * 8 7 6 31 31 H 0.96996 * 120.00257 * 179.97438 * 14 13 11 32 32 H 1.07997 * 119.99935 * 179.97438 * 19 6 5 33 33 H 1.07999 * 119.99681 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7243 3.3755 -1.1972 6 6 2.9542 4.0273 -0.0001 7 6 3.4565 5.4481 -0.0001 8 7 4.9215 5.4482 -0.0002 9 6 5.5954 6.6154 0.0002 10 8 4.9869 7.6693 0.0002 11 6 7.0591 6.6154 0.0008 12 1 7.5992 5.6802 0.0012 13 6 7.7593 7.8284 0.0007 14 7 7.1059 8.9600 0.0006 15 14 9.6272 7.8284 0.0006 16 1 10.1223 7.8284 -1.3995 17 1 10.1223 9.0410 0.7006 18 1 10.1224 6.6160 0.7007 19 6 2.7238 3.3757 1.1971 20 6 2.2627 2.0726 1.1971 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 2.0927 1.5597 -2.1324 27 1 2.9047 3.8844 -2.1326 28 1 3.0932 5.9619 -0.8901 29 1 3.0932 5.9620 0.8898 30 1 5.4065 4.6082 0.0002 31 1 7.5908 9.8001 0.0010 32 1 2.9039 3.8848 2.1323 33 1 2.0831 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039100798.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:30 Heat of formation + Delta-G solvation = -34.760033 kcal Electronic energy + Delta-G solvation = -15264.837408 eV Core-core repulsion = 12675.469188 eV Total energy + Delta-G solvation = -2589.368220 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.43281 -37.17776 -34.76564 -32.86250 -32.14535 -30.78119 -29.63607 -26.73079 -25.02327 -22.72860 -22.56514 -20.44911 -19.61903 -17.37762 -15.94872 -15.56540 -15.33803 -14.96120 -14.20273 -13.98843 -13.88029 -13.65359 -13.32552 -12.90317 -12.78778 -12.24857 -11.95503 -11.54713 -11.50220 -11.20517 -11.12569 -10.90134 -10.68887 -10.66094 -10.41514 -10.20434 -8.83560 -8.77092 -8.51600 -7.56063 -7.47815 -6.16421 -4.62020 1.44145 1.55767 3.15685 3.22318 3.26016 3.84560 4.14576 4.60860 4.70707 4.80867 5.07415 5.12935 5.15251 5.22141 5.28370 5.43301 5.56042 5.62821 5.74640 5.78873 5.89689 6.00769 6.09450 6.15336 6.35570 6.47257 6.56358 6.69774 6.94593 7.15889 7.45424 7.95703 8.11177 8.35497 9.04373 9.56254 10.61994 10.80446 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.054652 B = 0.004457 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.212850 B = 6281.431865 C = 6478.556147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.090 4.090 4 C -0.121 4.121 5 C -0.102 4.102 6 C -0.090 4.090 7 C 0.169 3.831 8 N -0.762 5.762 9 C 0.554 3.446 10 O -0.581 6.581 11 C -0.545 4.545 12 H 0.067 0.933 13 C 0.087 3.913 14 N -0.769 5.769 15 Si 0.908 3.092 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.265 1.265 19 C -0.102 4.102 20 C -0.121 4.121 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.381 0.619 31 H 0.268 0.732 32 H 0.123 0.877 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.850 -15.912 -0.001 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.139 4.139 5 C -0.120 4.120 6 C -0.091 4.091 7 C 0.045 3.955 8 N -0.418 5.418 9 C 0.358 3.642 10 O -0.464 6.464 11 C -0.582 4.582 12 H 0.086 0.914 13 C -0.132 4.132 14 N -0.397 5.397 15 Si 0.733 3.267 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.189 1.189 19 C -0.120 4.120 20 C -0.139 4.139 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.136 0.864 27 H 0.141 0.859 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.212 0.788 31 H 0.079 0.921 32 H 0.141 0.859 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.310 -14.894 0.002 17.564 hybrid contribution 1.149 -0.384 -0.007 1.212 sum -8.160 -15.279 -0.005 17.321 Atomic orbital electron populations 1.21748 0.94937 1.01401 1.02265 1.20513 0.96013 0.92939 1.02585 1.19844 0.99817 0.96062 0.93336 1.20969 1.00749 0.94933 0.97294 1.21121 0.98456 0.94521 0.97948 1.20214 0.98879 0.96853 0.93125 1.19807 0.84277 0.90095 1.01345 1.46195 1.03317 1.09550 1.82757 1.18255 0.88337 0.81261 0.76332 1.90599 1.70137 1.30728 1.54965 1.20884 0.89671 0.93252 1.54374 0.91431 1.25713 0.99870 0.95037 0.92629 1.70020 1.36429 0.97866 1.35424 0.86368 0.83132 0.78392 0.78816 1.19750 1.20466 1.18918 1.21117 0.98434 0.94546 0.97949 1.20965 1.00734 0.94949 0.97296 0.92643 0.92571 0.92575 0.91247 0.91244 0.86425 0.85940 0.92592 0.92597 0.78770 0.92121 0.85940 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.16 0.37 -0.81 16 2 C -0.08 -0.75 6.07 -27.88 -0.17 -0.92 16 3 C -0.09 -1.07 5.13 -104.62 -0.54 -1.61 16 4 C -0.12 -1.52 9.70 -39.58 -0.38 -1.90 16 5 C -0.10 -1.48 9.70 -39.58 -0.38 -1.86 16 6 C -0.09 -1.46 5.25 -104.63 -0.55 -2.00 16 7 C 0.17 3.40 5.80 -5.20 -0.03 3.37 16 8 N -0.76 -17.65 5.54 -62.91 -0.35 -17.99 16 9 C 0.55 16.12 7.75 -12.99 -0.10 16.02 16 10 O -0.58 -19.18 15.02 5.20 0.08 -19.10 16 11 C -0.54 -15.67 9.54 -35.63 -0.34 -16.01 16 12 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 13 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 14 N -0.77 -23.35 11.83 55.55 0.66 -22.70 16 15 Si 0.91 20.37 29.56 -169.99 -5.02 15.34 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 19 C -0.10 -1.48 9.70 -39.59 -0.38 -1.86 16 20 C -0.12 -1.52 9.70 -39.58 -0.38 -1.90 16 21 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 22 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 25 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 26 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 27 H 0.12 1.72 8.06 -52.48 -0.42 1.29 16 28 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 29 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 30 H 0.38 7.97 8.44 -40.82 -0.34 7.63 16 31 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 32 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 290.59 15.07 4.38 4.38 Total: -1.00 -34.01 290.59 -7.78 -41.79 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -4.53 Total: 5.41 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -2.99 Total: -7.13 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.31 Total: -40.69 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.08 Total: -19.10 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.01 -7.78 -41.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039100798.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.031 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds