Wall clock time and date at job start Mon Mar 30 2020 03:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38238 * 119.99571 * 269.72634 * 3 2 1 5 5 C 1.38240 * 119.99339 * 179.76368 * 4 3 2 6 6 C 1.38235 * 120.00243 * 0.48625 * 5 4 3 7 7 C 1.50696 * 119.99815 * 179.76576 * 6 5 4 8 8 N 1.46494 * 109.47352 * 270.02390 * 7 6 5 9 9 C 1.34776 * 120.00276 * 180.02562 * 8 7 6 10 10 O 1.21693 * 119.99931 * 359.97438 * 9 8 7 11 11 C 1.46375 * 120.00205 * 179.97438 * 9 8 7 12 12 H 1.07998 * 120.00047 * 359.97438 * 11 9 8 13 13 C 1.40053 * 119.99609 * 179.97438 * 11 9 8 14 14 N 1.30668 * 120.00552 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99371 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47418 * 90.00127 * 15 13 11 17 17 H 1.48507 * 109.47103 * 209.99991 * 15 13 11 18 18 H 1.48501 * 109.47617 * 329.99762 * 15 13 11 19 19 C 1.38230 * 119.99908 * 359.78566 * 6 5 4 20 20 C 1.38234 * 120.00207 * 89.99764 * 3 2 1 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00314 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00295 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99506 * 2 1 3 25 25 H 1.08996 * 109.47853 * 239.99849 * 2 1 3 26 26 H 1.07997 * 120.00032 * 359.97438 * 4 3 2 27 27 H 1.08004 * 119.99237 * 180.24848 * 5 4 3 28 28 H 1.09001 * 109.47324 * 30.02439 * 7 6 5 29 29 H 1.09004 * 109.47043 * 150.02071 * 7 6 5 30 30 H 0.97002 * 119.99957 * 359.97438 * 8 7 6 31 31 H 0.96996 * 120.00257 * 179.97438 * 14 13 11 32 32 H 1.07997 * 119.99935 * 179.97438 * 19 6 5 33 33 H 1.07999 * 119.99681 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2681 2.0705 -1.1972 5 6 2.7243 3.3755 -1.1972 6 6 2.9542 4.0273 -0.0001 7 6 3.4565 5.4481 -0.0001 8 7 4.9215 5.4482 -0.0002 9 6 5.5954 6.6154 0.0002 10 8 4.9869 7.6693 0.0002 11 6 7.0591 6.6154 0.0008 12 1 7.5992 5.6802 0.0012 13 6 7.7593 7.8284 0.0007 14 7 7.1059 8.9600 0.0006 15 14 9.6272 7.8284 0.0006 16 1 10.1223 7.8284 -1.3995 17 1 10.1223 9.0410 0.7006 18 1 10.1224 6.6160 0.7007 19 6 2.7238 3.3757 1.1971 20 6 2.2627 2.0726 1.1971 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 2.0927 1.5597 -2.1324 27 1 2.9047 3.8844 -2.1326 28 1 3.0932 5.9619 -0.8901 29 1 3.0932 5.9620 0.8898 30 1 5.4065 4.6082 0.0002 31 1 7.5908 9.8001 0.0010 32 1 2.9039 3.8848 2.1323 33 1 2.0831 1.5633 2.1324 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039100798.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:29 Heat of formation + Delta-G solvation = -57.175432 kcal Electronic energy + Delta-G solvation = -15265.809412 eV Core-core repulsion = 12675.469188 eV Total energy + Delta-G solvation = -2590.340224 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.58122 -39.22819 -36.10599 -34.70923 -34.00632 -31.84219 -30.95330 -28.62019 -26.53167 -23.78246 -23.62715 -21.82679 -21.40609 -19.37542 -17.55213 -17.05726 -16.66351 -16.23503 -16.05128 -15.58307 -15.13529 -14.57653 -14.50519 -14.37124 -14.17809 -13.63558 -13.27870 -13.24672 -12.85661 -12.71963 -12.62148 -12.48514 -12.08415 -12.02035 -11.66283 -11.63364 -10.94486 -10.02870 -9.83688 -9.52966 -9.45609 -8.30173 -6.88005 0.33164 0.49448 1.40004 1.41797 1.57416 2.24631 2.45050 2.72769 3.35203 3.58355 3.76424 3.90412 3.98832 4.14260 4.24755 4.52340 4.53070 4.59840 4.69167 4.77681 4.79069 5.07870 5.12032 5.13543 5.22712 5.30251 5.42523 5.49315 5.71456 5.73774 5.85038 6.09452 6.17293 6.24277 6.84606 7.50854 8.45881 8.65195 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.054652 B = 0.004457 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.212850 B = 6281.431865 C = 6478.556147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.082 4.082 4 C -0.120 4.120 5 C -0.110 4.110 6 C -0.110 4.110 7 C 0.176 3.824 8 N -0.749 5.749 9 C 0.536 3.464 10 O -0.633 6.633 11 C -0.573 4.573 12 H 0.087 0.913 13 C 0.027 3.973 14 N -0.822 5.822 15 Si 1.002 2.998 16 H -0.261 1.261 17 H -0.272 1.272 18 H -0.249 1.249 19 C -0.110 4.110 20 C -0.120 4.120 21 H 0.072 0.928 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.144 0.856 27 H 0.120 0.880 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.393 0.607 31 H 0.275 0.725 32 H 0.120 0.880 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.070 -18.815 -0.001 20.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.082 4.082 4 C -0.138 4.138 5 C -0.129 4.129 6 C -0.111 4.111 7 C 0.052 3.948 8 N -0.403 5.403 9 C 0.341 3.659 10 O -0.521 6.521 11 C -0.610 4.610 12 H 0.105 0.895 13 C -0.188 4.188 14 N -0.451 5.451 15 Si 0.820 3.180 16 H -0.185 1.185 17 H -0.197 1.197 18 H -0.172 1.172 19 C -0.129 4.129 20 C -0.138 4.138 21 H 0.091 0.909 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.161 0.839 27 H 0.138 0.862 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.226 0.774 31 H 0.085 0.915 32 H 0.138 0.862 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.554 -17.865 0.002 19.807 hybrid contribution 0.787 0.420 -0.009 0.892 sum -7.767 -17.445 -0.006 19.095 Atomic orbital electron populations 1.21741 0.94149 1.02489 1.01870 1.20596 0.96536 0.90854 1.03924 1.20272 0.97837 0.97441 0.92671 1.21250 0.99721 0.93932 0.98895 1.21179 0.98941 0.95617 0.97165 1.19850 1.01645 0.94833 0.94765 1.19742 0.82304 0.93094 0.99695 1.45880 1.04818 1.08520 1.81109 1.18680 0.89245 0.81913 0.76108 1.90549 1.71217 1.32902 1.57397 1.21426 0.90008 0.94712 1.54823 0.89484 1.27023 1.06600 0.94030 0.91135 1.70187 1.39582 0.99055 1.36313 0.84970 0.74393 0.79116 0.79481 1.18512 1.19658 1.17218 1.21175 0.98924 0.95640 0.97166 1.21246 0.99706 0.93949 0.98897 0.90872 0.92999 0.93002 0.89962 0.89958 0.83868 0.86189 0.94237 0.94244 0.77350 0.91475 0.86193 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.89 71.98 0.71 -1.14 16 2 C -0.08 -1.16 6.07 29.85 0.18 -0.98 16 3 C -0.08 -1.70 5.13 -19.86 -0.10 -1.80 16 4 C -0.12 -2.73 9.70 22.27 0.22 -2.51 16 5 C -0.11 -3.16 9.70 22.27 0.22 -2.94 16 6 C -0.11 -3.62 5.25 -19.87 -0.10 -3.72 16 7 C 0.18 7.43 5.80 85.63 0.50 7.93 16 8 N -0.75 -35.90 5.54 -471.15 -2.61 -38.51 16 9 C 0.54 32.39 7.75 86.36 0.67 33.06 16 10 O -0.63 -43.95 15.02 -4.32 -0.06 -44.02 16 11 C -0.57 -33.43 9.54 24.83 0.24 -33.20 16 12 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 13 C 0.03 1.54 5.50 85.31 0.47 2.01 16 14 N -0.82 -51.32 11.83 21.84 0.26 -51.07 16 15 Si 1.00 41.55 29.56 68.60 2.03 43.57 16 16 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 17 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 18 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 19 C -0.11 -3.16 9.70 22.27 0.22 -2.94 16 20 C -0.12 -2.73 9.70 22.27 0.22 -2.51 16 21 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 22 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 24 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 25 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 26 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 27 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 28 H 0.04 1.77 8.09 -2.39 -0.02 1.75 16 29 H 0.04 1.77 8.09 -2.38 -0.02 1.75 16 30 H 0.39 16.72 8.44 -92.71 -0.78 15.94 16 31 H 0.28 15.49 8.29 -92.71 -0.77 14.72 16 32 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -76.28 290.59 3.35 -72.93 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.32 Total: 25.84 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 3.42 Total: -8.74 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -2.35 Total: -89.57 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.06 Total: -44.02 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Total: -76.28 3.35 -72.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039100798.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.752 kcal (2) G-P(sol) polarization free energy of solvation -76.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds