Wall clock time and date at job start Mon Mar 30 2020 03:49:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.35898 * 117.00129 * 2 1
4 4 C 1.38756 * 120.14774 * 0.02562 * 3 2 1
5 5 C 1.37907 * 119.81502 * 179.97438 * 4 3 2
6 6 C 1.38784 * 120.45892 * 0.02562 * 5 4 3
7 7 C 1.37888 * 119.80456 * 0.12151 * 6 5 4
8 8 C 1.38528 * 120.14691 * 180.02562 * 3 2 1
9 9 C 1.50732 * 121.65403 * 179.53063 * 7 6 5
10 10 C 1.52882 * 109.96476 * 16.95550 * 9 7 6
11 11 N 1.47160 * 108.50285 * 309.58542 * 10 9 7
12 12 C 1.46624 * 110.25443 * 71.27380 * 11 10 9
13 13 H 1.08996 * 109.24497 * 67.69896 * 12 11 10
14 14 C 1.50706 * 109.27091 * 187.19260 * 12 11 10
15 15 H 1.07999 * 120.00196 * 121.01823 * 14 12 11
16 16 C 1.37879 * 119.99394 * 301.01691 * 14 12 11
17 17 N 1.31514 * 120.00338 * 359.97438 * 16 14 12
18 18 Si 1.86800 * 119.99426 * 180.02562 * 16 14 12
19 19 H 1.48495 * 109.47555 * 90.00165 * 18 16 14
20 20 H 1.48503 * 109.46814 * 210.00053 * 18 16 14
21 21 H 1.48496 * 109.47318 * 329.99545 * 18 16 14
22 22 H 1.09001 * 109.47116 * 299.99503 * 1 2 3
23 23 H 1.09000 * 109.47231 * 59.99605 * 1 2 3
24 24 H 1.09009 * 109.47195 * 179.97438 * 1 2 3
25 25 H 1.08004 * 120.09372 * 359.91366 * 4 3 2
26 26 H 1.07997 * 119.77328 * 180.02562 * 5 4 3
27 27 H 1.08003 * 119.84746 * 359.97438 * 8 3 2
28 28 H 1.08996 * 109.38631 * 137.10732 * 9 7 6
29 29 H 1.09006 * 109.38460 * 256.80561 * 9 7 6
30 30 H 1.08998 * 109.63687 * 69.28561 * 10 9 7
31 31 H 1.09002 * 109.63655 * 189.68052 * 10 9 7
32 32 H 1.00907 * 111.00234 * 307.85065 * 11 10 9
33 33 H 0.96996 * 119.99730 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0459 1.2108 0.0000
4 6 1.2933 2.3765 0.0005
5 6 1.9265 3.6016 0.0011
6 6 3.3123 3.6772 0.0005
7 6 4.0618 2.5199 -0.0031
8 6 3.4291 1.2869 -0.0005
9 6 5.5687 2.5535 -0.0143
10 6 6.0631 3.9399 0.3988
11 7 5.3581 4.9472 -0.4099
12 6 3.9548 5.0397 0.0050
13 1 3.9043 5.4579 1.0103
14 6 3.2131 5.9424 -0.9470
15 1 2.3639 5.5656 -1.4976
16 6 3.6189 7.2494 -1.1150
17 7 4.6527 7.7084 -0.4441
18 14 2.6992 8.3685 -2.2944
19 1 1.6059 9.0625 -1.5676
20 1 3.6369 9.3742 -2.8554
21 1 2.1237 7.5587 -3.3981
22 1 -0.3633 0.5138 0.8900
23 1 -0.3634 0.5139 -0.8899
24 1 -0.3634 -1.0277 -0.0005
25 1 0.2145 2.3246 -0.0005
26 1 1.3400 4.5084 0.0019
27 1 4.0173 0.3810 -0.0005
28 1 5.9524 1.8096 0.6839
29 1 5.9282 2.3252 -1.0177
30 1 5.8510 4.1047 1.4551
31 1 7.1367 4.0127 0.2252
32 1 5.4310 4.7365 -1.3940
33 1 4.9379 8.6280 -0.5621
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000083666378.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:49:34
Heat of formation + Delta-G solvation = -12.845874 kcal
Electronic energy + Delta-G solvation = -16283.017147 eV
Core-core repulsion = 13694.599196 eV
Total energy + Delta-G solvation = -2588.417951 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 233.116 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-39.86735 -38.12028 -34.99178 -33.11707 -31.26133 -29.36538 -28.77835 -26.68074
-25.31661 -22.65649 -22.23338 -21.07820 -19.24548 -17.29016 -16.57222 -15.64623
-15.47558 -15.17610 -14.60898 -13.98203 -13.75341 -13.41017 -13.17581 -12.72322
-12.48229 -11.97997 -11.84964 -11.71283 -11.50542 -11.07967 -10.90636 -10.71484
-10.49352 -10.25480 -10.07308 -9.81373 -9.04898 -8.47775 -8.19041 -7.35780
-6.92342 -5.91072 -4.06488 1.91003 2.10495 3.31580 3.39330 3.41951
3.56790 4.34143 4.48117 5.13011 5.24389 5.25785 5.28799 5.44442
5.51099 5.60730 5.67528 5.79262 5.91449 6.02961 6.10832 6.17523
6.40973 6.52078 6.64907 6.72842 6.88468 7.09851 7.33672 7.36289
7.44071 7.84723 7.88675 8.18028 8.55319 8.91026 9.07272 9.62004
11.12411
Molecular weight = 233.12amu
Principal moments of inertia in cm(-1)
A = 0.027543 B = 0.008238 C = 0.006569
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1016.344690 B = 3398.157794 C = 4261.485735
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.327 6.327
3 C 0.098 3.902
4 C -0.215 4.215
5 C -0.065 4.065
6 C -0.104 4.104
7 C -0.059 4.059
8 C -0.158 4.158
9 C -0.115 4.115
10 C 0.051 3.949
11 N -0.641 5.641
12 C 0.252 3.748
13 H 0.052 0.948
14 C -0.537 4.537
15 H 0.059 0.941
16 C 0.082 3.918
17 N -0.845 5.845
18 Si 0.884 3.116
19 H -0.281 1.281
20 H -0.286 1.286
21 H -0.275 1.275
22 H 0.051 0.949
23 H 0.051 0.949
24 H 0.092 0.908
25 H 0.117 0.883
26 H 0.132 0.868
27 H 0.117 0.883
28 H 0.065 0.935
29 H 0.069 0.931
30 H 0.062 0.938
31 H 0.062 0.938
32 H 0.327 0.673
33 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.870 -10.910 1.136 11.631
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.241 6.241
3 C 0.055 3.945
4 C -0.234 4.234
5 C -0.083 4.083
6 C -0.106 4.106
7 C -0.059 4.059
8 C -0.177 4.177
9 C -0.154 4.154
10 C -0.079 4.079
11 N -0.268 5.268
12 C 0.144 3.856
13 H 0.069 0.931
14 C -0.576 4.576
15 H 0.077 0.923
16 C -0.125 4.125
17 N -0.479 5.479
18 Si 0.711 3.289
19 H -0.208 1.208
20 H -0.212 1.212
21 H -0.200 1.200
22 H 0.070 0.930
23 H 0.070 0.930
24 H 0.110 0.890
25 H 0.135 0.865
26 H 0.150 0.850
27 H 0.135 0.865
28 H 0.083 0.917
29 H 0.087 0.913
30 H 0.080 0.920
31 H 0.080 0.920
32 H 0.144 0.856
33 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -3.424 -10.361 1.568 11.024
hybrid contribution -1.218 -0.206 -1.058 1.626
sum -4.642 -10.567 0.510 11.553
Atomic orbital electron populations
1.22921 0.79307 1.02990 1.01176 1.85983 1.20663 1.27722 1.89727
1.18793 0.92213 0.83655 0.99884 1.21167 0.99199 0.92768 1.10291
1.21116 0.94802 0.96546 0.95866 1.21259 0.93953 0.98009 0.97412
1.19469 0.95515 0.91738 0.99202 1.20186 0.91088 0.97694 1.08729
1.21257 0.91557 1.01080 1.01518 1.22082 0.98273 0.88382 0.99209
1.61302 1.14632 1.44349 1.06501 1.18158 0.84027 0.85476 0.97951
0.93088 1.21023 1.14592 0.95208 1.26775 0.92315 1.24986 0.94449
0.97776 0.95282 1.70115 1.23554 1.15000 1.39257 0.86756 0.79728
0.80802 0.81586 1.20753 1.21226 1.20008 0.93028 0.93015 0.88966
0.86501 0.85040 0.86527 0.91690 0.91306 0.91959 0.91972 0.85614
0.93304
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.36 9.82 101.05 0.99 1.35 16
2 O -0.33 -5.19 10.50 -19.42 -0.20 -5.40 16
3 C 0.10 1.76 6.68 -39.28 -0.26 1.50 16
4 C -0.22 -3.84 9.04 -39.51 -0.36 -4.20 16
5 C -0.06 -1.32 8.72 -39.50 -0.34 -1.66 16
6 C -0.10 -2.26 5.47 -104.58 -0.57 -2.84 16
7 C -0.06 -1.15 5.77 -104.60 -0.60 -1.75 16
8 C -0.16 -2.89 9.59 -39.34 -0.38 -3.26 16
9 C -0.12 -1.98 5.82 -27.93 -0.16 -2.14 16
10 C 0.05 0.98 6.62 -3.74 -0.02 0.96 16
11 N -0.64 -14.95 5.88 -109.28 -0.64 -15.59 16
12 C 0.25 6.20 2.40 -70.19 -0.17 6.03 16
13 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16
14 C -0.54 -14.23 7.84 -34.44 -0.27 -14.50 16
15 H 0.06 1.55 6.70 -52.49 -0.35 1.19 16
16 C 0.08 2.22 5.38 -17.82 -0.10 2.12 16
17 N -0.84 -23.90 12.72 55.43 0.70 -23.19 16
18 Si 0.88 20.76 29.54 -169.99 -5.02 15.74 16
19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
22 H 0.05 0.54 7.67 -51.93 -0.40 0.15 16
23 H 0.05 0.56 7.67 -51.93 -0.40 0.16 16
24 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16
25 H 0.12 1.75 6.32 -52.48 -0.33 1.42 16
26 H 0.13 2.69 7.07 -52.49 -0.37 2.32 16
27 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16
28 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16
29 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16
30 H 0.06 1.22 8.05 -51.93 -0.42 0.81 16
31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
32 H 0.33 7.64 8.55 -39.29 -0.34 7.30 16
33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16
LS Contribution 272.19 15.07 4.10 4.10
Total: -1.00 -28.99 272.19 -7.58 -36.58
By element:
Atomic # 1 Polarization: 10.44 SS G_CDS: -4.28 Total: 6.17 kcal
Atomic # 6 Polarization: -16.16 SS G_CDS: -2.25 Total: -18.41 kcal
Atomic # 7 Polarization: -38.84 SS G_CDS: 0.06 Total: -38.78 kcal
Atomic # 8 Polarization: -5.19 SS G_CDS: -0.20 Total: -5.40 kcal
Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal
Total LS contribution 4.10 Total: 4.10 kcal
Total: -28.99 -7.58 -36.58 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000083666378.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.731 kcal
(2) G-P(sol) polarization free energy of solvation -28.993 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.262 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.576 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.846 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds