Wall clock time and date at job start Mon Mar 30 2020 03:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35898 * 117.00129 * 2 1 4 4 C 1.38756 * 120.14774 * 0.02562 * 3 2 1 5 5 C 1.37907 * 119.81502 * 179.97438 * 4 3 2 6 6 C 1.38784 * 120.45892 * 0.02562 * 5 4 3 7 7 C 1.37888 * 119.80456 * 0.12151 * 6 5 4 8 8 C 1.38528 * 120.14691 * 180.02562 * 3 2 1 9 9 C 1.50732 * 121.65403 * 179.53063 * 7 6 5 10 10 C 1.52882 * 109.96476 * 16.95550 * 9 7 6 11 11 N 1.47160 * 108.50285 * 309.58542 * 10 9 7 12 12 C 1.46624 * 110.25443 * 71.27380 * 11 10 9 13 13 H 1.08996 * 109.24497 * 67.69896 * 12 11 10 14 14 C 1.50706 * 109.27091 * 187.19260 * 12 11 10 15 15 H 1.07999 * 120.00196 * 121.01823 * 14 12 11 16 16 C 1.37879 * 119.99394 * 301.01691 * 14 12 11 17 17 N 1.31514 * 120.00338 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99426 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47555 * 90.00165 * 18 16 14 20 20 H 1.48503 * 109.46814 * 210.00053 * 18 16 14 21 21 H 1.48496 * 109.47318 * 329.99545 * 18 16 14 22 22 H 1.09001 * 109.47116 * 299.99503 * 1 2 3 23 23 H 1.09000 * 109.47231 * 59.99605 * 1 2 3 24 24 H 1.09009 * 109.47195 * 179.97438 * 1 2 3 25 25 H 1.08004 * 120.09372 * 359.91366 * 4 3 2 26 26 H 1.07997 * 119.77328 * 180.02562 * 5 4 3 27 27 H 1.08003 * 119.84746 * 359.97438 * 8 3 2 28 28 H 1.08996 * 109.38631 * 137.10732 * 9 7 6 29 29 H 1.09006 * 109.38460 * 256.80561 * 9 7 6 30 30 H 1.08998 * 109.63687 * 69.28561 * 10 9 7 31 31 H 1.09002 * 109.63655 * 189.68052 * 10 9 7 32 32 H 1.00907 * 111.00234 * 307.85065 * 11 10 9 33 33 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2933 2.3765 0.0005 5 6 1.9265 3.6016 0.0011 6 6 3.3123 3.6772 0.0005 7 6 4.0618 2.5199 -0.0031 8 6 3.4291 1.2869 -0.0005 9 6 5.5687 2.5535 -0.0143 10 6 6.0631 3.9399 0.3988 11 7 5.3581 4.9472 -0.4099 12 6 3.9548 5.0397 0.0050 13 1 3.9043 5.4579 1.0103 14 6 3.2131 5.9424 -0.9470 15 1 2.3639 5.5656 -1.4976 16 6 3.6189 7.2494 -1.1150 17 7 4.6527 7.7084 -0.4441 18 14 2.6992 8.3685 -2.2944 19 1 1.6059 9.0625 -1.5676 20 1 3.6369 9.3742 -2.8554 21 1 2.1237 7.5587 -3.3981 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 0.2145 2.3246 -0.0005 26 1 1.3400 4.5084 0.0019 27 1 4.0173 0.3810 -0.0005 28 1 5.9524 1.8096 0.6839 29 1 5.9282 2.3252 -1.0177 30 1 5.8510 4.1047 1.4551 31 1 7.1367 4.0127 0.2252 32 1 5.4310 4.7365 -1.3940 33 1 4.9379 8.6280 -0.5621 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083666378.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:34 Heat of formation + Delta-G solvation = -12.845874 kcal Electronic energy + Delta-G solvation = -16283.017147 eV Core-core repulsion = 13694.599196 eV Total energy + Delta-G solvation = -2588.417951 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.86735 -38.12028 -34.99178 -33.11707 -31.26133 -29.36538 -28.77835 -26.68074 -25.31661 -22.65649 -22.23338 -21.07820 -19.24548 -17.29016 -16.57222 -15.64623 -15.47558 -15.17610 -14.60898 -13.98203 -13.75341 -13.41017 -13.17581 -12.72322 -12.48229 -11.97997 -11.84964 -11.71283 -11.50542 -11.07967 -10.90636 -10.71484 -10.49352 -10.25480 -10.07308 -9.81373 -9.04898 -8.47775 -8.19041 -7.35780 -6.92342 -5.91072 -4.06488 1.91003 2.10495 3.31580 3.39330 3.41951 3.56790 4.34143 4.48117 5.13011 5.24389 5.25785 5.28799 5.44442 5.51099 5.60730 5.67528 5.79262 5.91449 6.02961 6.10832 6.17523 6.40973 6.52078 6.64907 6.72842 6.88468 7.09851 7.33672 7.36289 7.44071 7.84723 7.88675 8.18028 8.55319 8.91026 9.07272 9.62004 11.12411 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.027543 B = 0.008238 C = 0.006569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.344690 B = 3398.157794 C = 4261.485735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.327 6.327 3 C 0.098 3.902 4 C -0.215 4.215 5 C -0.065 4.065 6 C -0.104 4.104 7 C -0.059 4.059 8 C -0.158 4.158 9 C -0.115 4.115 10 C 0.051 3.949 11 N -0.641 5.641 12 C 0.252 3.748 13 H 0.052 0.948 14 C -0.537 4.537 15 H 0.059 0.941 16 C 0.082 3.918 17 N -0.845 5.845 18 Si 0.884 3.116 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.275 1.275 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.092 0.908 25 H 0.117 0.883 26 H 0.132 0.868 27 H 0.117 0.883 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.327 0.673 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.870 -10.910 1.136 11.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.241 6.241 3 C 0.055 3.945 4 C -0.234 4.234 5 C -0.083 4.083 6 C -0.106 4.106 7 C -0.059 4.059 8 C -0.177 4.177 9 C -0.154 4.154 10 C -0.079 4.079 11 N -0.268 5.268 12 C 0.144 3.856 13 H 0.069 0.931 14 C -0.576 4.576 15 H 0.077 0.923 16 C -0.125 4.125 17 N -0.479 5.479 18 Si 0.711 3.289 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.200 1.200 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.110 0.890 25 H 0.135 0.865 26 H 0.150 0.850 27 H 0.135 0.865 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.424 -10.361 1.568 11.024 hybrid contribution -1.218 -0.206 -1.058 1.626 sum -4.642 -10.567 0.510 11.553 Atomic orbital electron populations 1.22921 0.79307 1.02990 1.01176 1.85983 1.20663 1.27722 1.89727 1.18793 0.92213 0.83655 0.99884 1.21167 0.99199 0.92768 1.10291 1.21116 0.94802 0.96546 0.95866 1.21259 0.93953 0.98009 0.97412 1.19469 0.95515 0.91738 0.99202 1.20186 0.91088 0.97694 1.08729 1.21257 0.91557 1.01080 1.01518 1.22082 0.98273 0.88382 0.99209 1.61302 1.14632 1.44349 1.06501 1.18158 0.84027 0.85476 0.97951 0.93088 1.21023 1.14592 0.95208 1.26775 0.92315 1.24986 0.94449 0.97776 0.95282 1.70115 1.23554 1.15000 1.39257 0.86756 0.79728 0.80802 0.81586 1.20753 1.21226 1.20008 0.93028 0.93015 0.88966 0.86501 0.85040 0.86527 0.91690 0.91306 0.91959 0.91972 0.85614 0.93304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.82 101.05 0.99 1.35 16 2 O -0.33 -5.19 10.50 -19.42 -0.20 -5.40 16 3 C 0.10 1.76 6.68 -39.28 -0.26 1.50 16 4 C -0.22 -3.84 9.04 -39.51 -0.36 -4.20 16 5 C -0.06 -1.32 8.72 -39.50 -0.34 -1.66 16 6 C -0.10 -2.26 5.47 -104.58 -0.57 -2.84 16 7 C -0.06 -1.15 5.77 -104.60 -0.60 -1.75 16 8 C -0.16 -2.89 9.59 -39.34 -0.38 -3.26 16 9 C -0.12 -1.98 5.82 -27.93 -0.16 -2.14 16 10 C 0.05 0.98 6.62 -3.74 -0.02 0.96 16 11 N -0.64 -14.95 5.88 -109.28 -0.64 -15.59 16 12 C 0.25 6.20 2.40 -70.19 -0.17 6.03 16 13 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 14 C -0.54 -14.23 7.84 -34.44 -0.27 -14.50 16 15 H 0.06 1.55 6.70 -52.49 -0.35 1.19 16 16 C 0.08 2.22 5.38 -17.82 -0.10 2.12 16 17 N -0.84 -23.90 12.72 55.43 0.70 -23.19 16 18 Si 0.88 20.76 29.54 -169.99 -5.02 15.74 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H 0.05 0.54 7.67 -51.93 -0.40 0.15 16 23 H 0.05 0.56 7.67 -51.93 -0.40 0.16 16 24 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16 25 H 0.12 1.75 6.32 -52.48 -0.33 1.42 16 26 H 0.13 2.69 7.07 -52.49 -0.37 2.32 16 27 H 0.12 1.90 8.06 -52.48 -0.42 1.48 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.22 8.05 -51.93 -0.42 0.81 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.33 7.64 8.55 -39.29 -0.34 7.30 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 272.19 15.07 4.10 4.10 Total: -1.00 -28.99 272.19 -7.58 -36.58 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -4.28 Total: 6.17 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -2.25 Total: -18.41 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.06 Total: -38.78 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.20 Total: -5.40 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.99 -7.58 -36.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083666378.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.731 kcal (2) G-P(sol) polarization free energy of solvation -28.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds