Wall clock time and date at job start Mon Mar 30 2020 03:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32665 * 119.99925 * 2 1 4 4 C 1.47682 * 120.00145 * 353.26928 * 3 2 1 5 5 C 1.39505 * 120.17987 * 324.97786 * 4 3 2 6 6 C 1.37953 * 119.92052 * 180.02562 * 5 4 3 7 7 C 1.38468 * 120.29768 * 0.02562 * 6 5 4 8 8 C 1.38120 * 120.37141 * 359.70487 * 7 6 5 9 9 C 1.38731 * 120.06699 * 0.54971 * 8 7 6 10 10 O 1.35644 * 120.15156 * 179.74588 * 9 8 7 11 11 C 1.34817 * 116.99432 * 5.58592 * 10 9 8 12 12 H 1.07997 * 120.00347 * 354.92202 * 11 10 9 13 13 C 1.38652 * 119.99501 * 174.64869 * 11 10 9 14 14 N 1.31553 * 120.00093 * 0.27852 * 13 11 10 15 15 Si 1.86800 * 119.99786 * 180.27408 * 13 11 10 16 16 H 1.48504 * 109.47313 * 89.99776 * 15 13 11 17 17 H 1.48492 * 109.47306 * 210.00354 * 15 13 11 18 18 H 1.48507 * 109.46871 * 330.00117 * 15 13 11 19 19 C 1.50701 * 120.00168 * 180.02562 * 2 1 3 20 20 N 1.46903 * 109.46742 * 274.99612 * 19 2 1 21 21 H 1.08998 * 109.47201 * 93.41415 * 1 2 3 22 22 H 1.09004 * 109.46640 * 213.41353 * 1 2 3 23 23 H 1.08999 * 109.47139 * 333.41153 * 1 2 3 24 24 H 1.08001 * 120.00030 * 173.26161 * 3 2 1 25 25 H 1.07995 * 120.03433 * 0.03747 * 5 4 3 26 26 H 1.08001 * 119.84802 * 179.97438 * 6 5 4 27 27 H 1.07999 * 119.81767 * 179.97438 * 7 6 5 28 28 H 1.08001 * 119.97128 * 180.30360 * 8 7 6 29 29 H 0.97001 * 119.99665 * 180.02562 * 14 13 11 30 30 H 1.08999 * 109.47417 * 34.99403 * 19 2 1 31 31 H 1.09003 * 109.47337 * 155.00009 * 19 2 1 32 32 H 1.00899 * 110.99806 * 56.04397 * 20 19 2 33 33 H 1.00905 * 111.00165 * 180.02562 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1703 1.1489 0.0000 4 6 1.4395 2.4235 -0.1499 5 6 0.3104 2.4927 -0.9663 6 6 -0.3678 3.6862 -1.1029 7 6 0.0672 4.8175 -0.4333 8 6 1.1804 4.7614 0.3824 9 6 1.8771 3.5705 0.5267 10 8 2.9735 3.5147 1.3233 11 6 3.2675 4.6195 2.0379 12 1 2.6905 5.5218 1.8992 13 6 4.3072 4.5955 2.9549 14 7 5.0103 3.4965 3.1237 15 14 4.7098 6.1239 3.9505 16 1 3.9267 6.1133 5.2123 17 1 6.1602 6.1400 4.2682 18 1 4.3623 7.3337 3.1625 19 6 2.2605 -1.3051 -0.0006 20 7 2.4009 -1.7900 1.3790 21 1 -0.3633 -0.0612 -1.0258 22 1 -0.3633 -0.8579 0.5659 23 1 -0.3633 0.9190 0.4600 24 1 3.2447 1.1522 0.1097 25 1 -0.0323 1.6129 -1.4905 26 1 -1.2416 3.7386 -1.7355 27 1 -0.4694 5.7479 -0.5462 28 1 1.5111 5.6466 0.9055 29 1 5.7374 3.4797 3.7655 30 1 1.7132 -2.0405 -0.5903 31 1 3.2488 -1.1539 -0.4348 32 1 1.5001 -1.8766 1.8252 33 1 2.9036 -2.6645 1.4055 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086213915.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:26 Heat of formation + Delta-G solvation = 10.631150 kcal Electronic energy + Delta-G solvation = -15887.838819 eV Core-core repulsion = 13300.438909 eV Total energy + Delta-G solvation = -2587.399910 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.16659 -36.92846 -35.78523 -32.76273 -32.28115 -29.35945 -29.07581 -26.74290 -25.35594 -24.31817 -21.53614 -20.89872 -18.09531 -17.87781 -16.63229 -15.69373 -14.95769 -14.61167 -14.52134 -14.36264 -13.81497 -13.67585 -13.32131 -12.94411 -12.73537 -12.25090 -11.87302 -11.66913 -11.42210 -11.22137 -10.99354 -10.82448 -10.58899 -10.40651 -10.27848 -9.33078 -8.95088 -8.78023 -8.41574 -7.71474 -6.98538 -6.43267 -4.01534 1.82167 2.40282 3.09402 3.13900 3.15128 3.19305 3.97361 4.63297 4.97988 5.10282 5.24717 5.28609 5.42150 5.63438 5.69694 5.75062 5.83294 5.96767 6.03041 6.12001 6.26472 6.31505 6.51578 6.72567 6.91341 7.02543 7.11293 7.28345 7.34882 7.38580 7.46180 7.60170 7.67716 7.85194 8.00783 9.01275 9.71390 10.73730 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.020597 B = 0.008475 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.127405 B = 3303.215399 C = 4516.687171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.175 4.175 3 C -0.041 4.041 4 C -0.143 4.143 5 C -0.065 4.065 6 C -0.221 4.221 7 C -0.070 4.070 8 C -0.238 4.238 9 C 0.165 3.835 10 O -0.165 6.165 11 C -0.395 4.395 12 H 0.092 0.908 13 C 0.041 3.959 14 N -0.855 5.855 15 Si 0.940 3.060 16 H -0.273 1.273 17 H -0.277 1.277 18 H -0.268 1.268 19 C 0.111 3.889 20 N -0.843 5.843 21 H 0.056 0.944 22 H 0.045 0.955 23 H 0.072 0.928 24 H 0.117 0.883 25 H 0.120 0.880 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.127 0.873 29 H 0.270 0.730 30 H 0.023 0.977 31 H 0.072 0.928 32 H 0.338 0.662 33 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.127 -4.667 -5.247 10.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.176 4.176 3 C -0.061 4.061 4 C -0.145 4.145 5 C -0.083 4.083 6 C -0.240 4.240 7 C -0.088 4.088 8 C -0.257 4.257 9 C 0.110 3.890 10 O -0.067 6.067 11 C -0.471 4.471 12 H 0.109 0.891 13 C -0.164 4.164 14 N -0.488 5.488 15 Si 0.765 3.235 16 H -0.199 1.199 17 H -0.202 1.202 18 H -0.192 1.192 19 C -0.019 4.019 20 N -0.372 5.372 21 H 0.074 0.926 22 H 0.064 0.936 23 H 0.091 0.909 24 H 0.135 0.865 25 H 0.137 0.863 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.145 0.855 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.091 0.909 32 H 0.151 0.849 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.318 -4.264 -4.927 9.076 hybrid contribution -0.355 0.094 0.238 0.437 sum -6.673 -4.170 -4.689 9.160 Atomic orbital electron populations 1.20954 0.92978 1.02056 1.00418 1.21526 0.94811 0.93835 1.07408 1.21387 0.99258 0.90224 0.95188 1.18152 0.99142 0.92201 1.04965 1.21052 0.93404 0.97274 0.96593 1.20520 1.03076 0.93734 1.06655 1.20806 0.95399 0.97342 0.95295 1.21120 0.99802 0.98707 1.06052 1.19463 0.86724 0.92314 0.90484 1.83951 1.35467 1.38564 1.48742 1.21345 1.17073 0.89658 1.19042 0.89079 1.25290 0.95613 0.98696 0.96784 1.70052 1.18986 1.26480 1.33329 0.85731 0.78139 0.80007 0.79671 1.19862 1.20229 1.19205 1.20612 0.98948 0.93304 0.89020 1.58687 1.25036 1.35517 1.17984 0.92561 0.93595 0.90897 0.86471 0.86254 0.87672 0.87605 0.85515 0.91969 0.95849 0.90921 0.84929 0.85344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 8.21 36.01 0.30 -1.31 16 2 C -0.18 -3.02 5.52 -101.24 -0.56 -3.58 16 3 C -0.04 -0.86 8.94 -37.62 -0.34 -1.20 16 4 C -0.14 -3.11 5.19 -104.84 -0.54 -3.66 16 5 C -0.07 -1.20 7.59 -39.21 -0.30 -1.50 16 6 C -0.22 -3.90 10.03 -39.60 -0.40 -4.30 16 7 C -0.07 -1.32 10.03 -39.54 -0.40 -1.71 16 8 C -0.24 -5.28 9.16 -39.44 -0.36 -5.64 16 9 C 0.17 4.08 6.66 -38.68 -0.26 3.82 16 10 O -0.17 -4.74 9.20 0.41 0.00 -4.74 16 11 C -0.40 -11.13 9.49 30.89 0.29 -10.83 16 12 H 0.09 2.38 5.21 -52.49 -0.27 2.10 16 13 C 0.04 1.14 5.49 -17.52 -0.10 1.05 16 14 N -0.85 -25.22 13.67 55.48 0.76 -24.46 16 15 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 19 C 0.11 1.65 6.95 -4.97 -0.03 1.61 16 20 N -0.84 -12.31 9.61 -11.41 -0.11 -12.42 16 21 H 0.06 0.73 6.91 -51.93 -0.36 0.37 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 1.22 5.98 -51.93 -0.31 0.91 16 24 H 0.12 2.68 8.04 -52.49 -0.42 2.26 16 25 H 0.12 1.88 5.43 -52.49 -0.28 1.60 16 26 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 29 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 1.10 8.03 -51.93 -0.42 0.68 16 32 H 0.34 4.54 8.98 -39.29 -0.35 4.19 16 33 H 0.33 3.94 9.08 -39.29 -0.36 3.59 16 LS Contribution 280.60 15.07 4.23 4.23 Total: -1.00 -30.92 280.60 -6.73 -37.65 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -3.90 Total: 11.34 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: -2.69 Total: -27.24 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.65 Total: -36.88 kcal Atomic # 8 Polarization: -4.74 SS G_CDS: 0.00 Total: -4.74 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.92 -6.73 -37.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086213915.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.279 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds