Wall clock time and date at job start Mon Mar 30 2020 03:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32665 * 119.99925 * 2 1 4 4 C 1.47682 * 120.00145 * 353.26928 * 3 2 1 5 5 C 1.39505 * 120.17987 * 324.97786 * 4 3 2 6 6 C 1.37953 * 119.92052 * 180.02562 * 5 4 3 7 7 C 1.38468 * 120.29768 * 0.02562 * 6 5 4 8 8 C 1.38120 * 120.37141 * 359.70487 * 7 6 5 9 9 C 1.38731 * 120.06699 * 0.54971 * 8 7 6 10 10 O 1.35644 * 120.15156 * 179.74588 * 9 8 7 11 11 C 1.34817 * 116.99432 * 5.58592 * 10 9 8 12 12 H 1.07997 * 120.00347 * 354.92202 * 11 10 9 13 13 C 1.38652 * 119.99501 * 174.64869 * 11 10 9 14 14 N 1.31553 * 120.00093 * 0.27852 * 13 11 10 15 15 Si 1.86800 * 119.99786 * 180.27408 * 13 11 10 16 16 H 1.48504 * 109.47313 * 89.99776 * 15 13 11 17 17 H 1.48492 * 109.47306 * 210.00354 * 15 13 11 18 18 H 1.48507 * 109.46871 * 330.00117 * 15 13 11 19 19 C 1.50701 * 120.00168 * 180.02562 * 2 1 3 20 20 N 1.46903 * 109.46742 * 274.99612 * 19 2 1 21 21 H 1.08998 * 109.47201 * 93.41415 * 1 2 3 22 22 H 1.09004 * 109.46640 * 213.41353 * 1 2 3 23 23 H 1.08999 * 109.47139 * 333.41153 * 1 2 3 24 24 H 1.08001 * 120.00030 * 173.26161 * 3 2 1 25 25 H 1.07995 * 120.03433 * 0.03747 * 5 4 3 26 26 H 1.08001 * 119.84802 * 179.97438 * 6 5 4 27 27 H 1.07999 * 119.81767 * 179.97438 * 7 6 5 28 28 H 1.08001 * 119.97128 * 180.30360 * 8 7 6 29 29 H 0.97001 * 119.99665 * 180.02562 * 14 13 11 30 30 H 1.08999 * 109.47417 * 34.99403 * 19 2 1 31 31 H 1.09003 * 109.47337 * 155.00009 * 19 2 1 32 32 H 1.00899 * 110.99806 * 56.04397 * 20 19 2 33 33 H 1.00905 * 111.00165 * 180.02562 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1703 1.1489 0.0000 4 6 1.4395 2.4235 -0.1499 5 6 0.3104 2.4927 -0.9663 6 6 -0.3678 3.6862 -1.1029 7 6 0.0672 4.8175 -0.4333 8 6 1.1804 4.7614 0.3824 9 6 1.8771 3.5705 0.5267 10 8 2.9735 3.5147 1.3233 11 6 3.2675 4.6195 2.0379 12 1 2.6905 5.5218 1.8992 13 6 4.3072 4.5955 2.9549 14 7 5.0103 3.4965 3.1237 15 14 4.7098 6.1239 3.9505 16 1 3.9267 6.1133 5.2123 17 1 6.1602 6.1400 4.2682 18 1 4.3623 7.3337 3.1625 19 6 2.2605 -1.3051 -0.0006 20 7 2.4009 -1.7900 1.3790 21 1 -0.3633 -0.0612 -1.0258 22 1 -0.3633 -0.8579 0.5659 23 1 -0.3633 0.9190 0.4600 24 1 3.2447 1.1522 0.1097 25 1 -0.0323 1.6129 -1.4905 26 1 -1.2416 3.7386 -1.7355 27 1 -0.4694 5.7479 -0.5462 28 1 1.5111 5.6466 0.9055 29 1 5.7374 3.4797 3.7655 30 1 1.7132 -2.0405 -0.5903 31 1 3.2488 -1.1539 -0.4348 32 1 1.5001 -1.8766 1.8252 33 1 2.9036 -2.6645 1.4055 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086213915.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:25 Heat of formation + Delta-G solvation = -11.024151 kcal Electronic energy + Delta-G solvation = -15888.777864 eV Core-core repulsion = 13300.438909 eV Total energy + Delta-G solvation = -2588.338955 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.86651 -38.58806 -37.26177 -34.31744 -34.09007 -30.83966 -30.71685 -28.12358 -27.35073 -25.67899 -23.21091 -22.46793 -19.82284 -19.52390 -18.37971 -17.04621 -16.60981 -16.21719 -16.06932 -15.82711 -15.42453 -15.32029 -14.87243 -14.46759 -14.13038 -13.78140 -13.50547 -13.24719 -13.00268 -12.76072 -12.47368 -12.40815 -12.17489 -12.03679 -11.81878 -11.11780 -10.80492 -10.42846 -9.56108 -9.29525 -8.65259 -8.45751 -6.13220 0.27133 0.76583 1.33260 1.43416 1.50988 1.56231 2.17267 2.87183 3.22061 3.53269 3.82811 3.90836 4.12882 4.19755 4.26739 4.34161 4.49782 4.60476 4.73634 4.74738 4.87351 4.91511 5.11362 5.12422 5.19828 5.34983 5.59070 5.66385 5.77871 5.85593 5.96591 6.12573 6.27531 6.27769 6.65803 6.97963 7.81200 8.76798 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.020597 B = 0.008475 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.127405 B = 3303.215399 C = 4516.687171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.135 4.135 3 C -0.096 4.096 4 C -0.146 4.146 5 C -0.064 4.064 6 C -0.194 4.194 7 C -0.072 4.072 8 C -0.253 4.253 9 C 0.117 3.883 10 O -0.221 6.221 11 C -0.417 4.417 12 H 0.100 0.900 13 C -0.022 4.022 14 N -0.915 5.915 15 Si 1.018 2.982 16 H -0.264 1.264 17 H -0.270 1.270 18 H -0.253 1.253 19 C 0.107 3.893 20 N -0.862 5.862 21 H 0.090 0.910 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.075 0.925 25 H 0.155 0.845 26 H 0.154 0.846 27 H 0.144 0.856 28 H 0.116 0.884 29 H 0.272 0.728 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.347 0.653 33 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.356 -4.999 -6.738 13.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.136 4.136 3 C -0.116 4.116 4 C -0.147 4.147 5 C -0.081 4.081 6 C -0.213 4.213 7 C -0.090 4.090 8 C -0.272 4.272 9 C 0.066 3.934 10 O -0.127 6.127 11 C -0.493 4.493 12 H 0.117 0.883 13 C -0.220 4.220 14 N -0.553 5.553 15 Si 0.837 3.163 16 H -0.189 1.189 17 H -0.195 1.195 18 H -0.176 1.176 19 C -0.023 4.023 20 N -0.395 5.395 21 H 0.108 0.892 22 H 0.090 0.910 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.172 0.828 26 H 0.172 0.828 27 H 0.162 0.838 28 H 0.134 0.866 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.160 0.840 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.599 -4.603 -6.461 12.453 hybrid contribution 0.368 -0.008 0.458 0.587 sum -9.231 -4.611 -6.003 11.938 Atomic orbital electron populations 1.21040 0.90419 1.02375 1.02740 1.22038 0.96613 0.93480 1.01433 1.21157 0.97629 0.91780 1.01002 1.18564 1.00022 0.91639 1.04493 1.21462 0.92020 0.99201 0.95440 1.21142 1.03141 0.92361 1.04617 1.21231 0.94083 0.99669 0.94010 1.21264 1.01164 0.97564 1.07202 1.20131 0.87222 0.94624 0.91467 1.83929 1.38279 1.39214 1.51234 1.21836 1.17659 0.90242 1.19609 0.88291 1.26586 0.95151 1.02425 0.97801 1.70213 1.20475 1.29394 1.35231 0.84609 0.78090 0.75728 0.77905 1.18852 1.19505 1.17620 1.20669 0.98764 0.92958 0.89870 1.58583 1.25994 1.37007 1.17898 0.89165 0.90986 0.92605 0.90675 0.82780 0.82829 0.83835 0.86590 0.91933 0.92055 0.92058 0.84017 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.84 8.21 71.24 0.58 -2.26 16 2 C -0.14 -4.49 5.52 -17.62 -0.10 -4.59 16 3 C -0.10 -4.18 8.94 23.60 0.21 -3.97 16 4 C -0.15 -6.46 5.19 -20.01 -0.10 -6.56 16 5 C -0.06 -2.15 7.59 22.51 0.17 -1.98 16 6 C -0.19 -5.97 10.03 22.26 0.22 -5.74 16 7 C -0.07 -2.50 10.03 22.30 0.22 -2.28 16 8 C -0.25 -11.44 9.16 22.36 0.20 -11.23 16 9 C 0.12 6.07 6.66 22.86 0.15 6.22 16 10 O -0.22 -13.78 9.20 -21.44 -0.20 -13.97 16 11 C -0.42 -25.17 9.49 67.92 0.64 -24.52 16 12 H 0.10 5.49 5.21 -2.91 -0.02 5.48 16 13 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 14 N -0.92 -57.96 13.67 21.61 0.30 -57.67 16 15 Si 1.02 44.17 29.55 68.60 2.03 46.20 16 16 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 19 C 0.11 3.01 6.95 85.56 0.60 3.61 16 20 N -0.86 -24.21 9.61 -190.00 -1.83 -26.04 16 21 H 0.09 1.81 6.91 -2.39 -0.02 1.80 16 22 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.06 1.69 5.98 -2.39 -0.01 1.67 16 24 H 0.08 3.83 8.04 -2.91 -0.02 3.81 16 25 H 0.15 4.07 5.43 -2.91 -0.02 4.06 16 26 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 27 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 28 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 29 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.86 8.03 -2.39 -0.02 1.84 16 32 H 0.35 8.64 8.98 -89.69 -0.81 7.83 16 33 H 0.35 7.80 9.08 -89.69 -0.81 6.99 16 Total: -1.00 -75.05 280.60 3.10 -71.95 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -0.48 Total: 33.64 kcal Atomic # 6 Polarization: -57.39 SS G_CDS: 3.27 Total: -54.11 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -1.53 Total: -83.71 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.20 Total: -13.97 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -75.05 3.10 -71.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086213915.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.927 kcal (2) G-P(sol) polarization free energy of solvation -75.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds