Wall clock time and date at job start Mon Mar 30 2020 03:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35671 * 117.00341 * 2 1 4 4 C 1.39185 * 119.67933 * 0.02562 * 3 2 1 5 5 C 1.36416 * 120.12766 * 179.70288 * 4 3 2 6 6 C 1.40738 * 119.70974 * 0.54377 * 5 4 3 7 7 C 1.41209 * 120.06469 * 179.74537 * 6 5 4 8 8 H 1.08003 * 120.00124 * 154.42428 * 7 6 5 9 9 C 1.39891 * 120.00111 * 334.42558 * 7 6 5 10 10 N 1.30879 * 120.00085 * 334.26182 * 9 7 6 11 11 Si 1.86798 * 120.00130 * 154.25813 * 9 7 6 12 12 H 1.48501 * 109.46951 * 89.99970 * 11 9 7 13 13 H 1.48504 * 109.47010 * 330.00483 * 11 9 7 14 14 H 1.48496 * 109.47509 * 210.00312 * 11 9 7 15 15 C 1.41074 * 119.87038 * 359.46838 * 6 5 4 16 16 C 1.36422 * 119.71711 * 0.24592 * 15 6 5 17 17 C 1.51438 * 109.98999 * 180.02562 * 16 15 6 18 18 C 1.54371 * 105.10187 * 342.88262 * 17 16 15 19 19 C 1.51377 * 130.20854 * 180.21446 * 15 6 5 20 20 H 1.09001 * 110.31517 * 315.99516 * 19 15 6 21 21 N 1.46894 * 110.31739 * 78.08900 * 19 15 6 22 22 H 1.09000 * 109.47211 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46977 * 300.00436 * 1 2 3 24 24 H 1.09002 * 109.46794 * 59.99895 * 1 2 3 25 25 H 1.08003 * 119.94123 * 0.02562 * 4 3 2 26 26 H 1.08000 * 120.14768 * 180.29033 * 5 4 3 27 27 H 0.97001 * 119.99865 * 354.23682 * 10 9 7 28 28 H 1.08998 * 110.31377 * 223.97275 * 17 16 15 29 29 H 1.08999 * 110.40078 * 101.82705 * 17 16 15 30 30 H 1.09000 * 110.86610 * 267.91694 * 18 17 16 31 31 H 1.08991 * 111.05165 * 144.31385 * 18 17 16 32 32 H 1.00898 * 111.00060 * 180.02562 * 21 19 15 33 33 H 1.00901 * 111.00083 * 303.95429 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 1.2806 2.3719 0.0005 5 6 1.8904 3.5921 0.0067 6 6 3.2956 3.6696 0.0008 7 6 3.9347 4.9288 0.0017 8 1 4.9332 5.0274 0.4014 9 6 3.2745 6.0486 -0.5153 10 7 2.3416 5.8981 -1.4207 11 14 3.7246 7.7587 0.0868 12 1 4.8078 8.3138 -0.7639 13 1 4.1913 7.6810 1.4944 14 1 2.5325 8.6407 0.0085 15 6 4.0645 2.4869 0.0001 16 6 3.4398 1.2741 -0.0001 17 6 4.4678 0.1621 -0.0004 18 6 5.7867 0.8338 -0.4390 19 6 5.5664 2.2976 -0.0013 20 1 6.0332 2.9798 -0.7118 21 7 6.1092 2.5158 1.3461 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.2024 2.3083 0.0014 26 1 1.2975 4.4948 0.0118 27 1 2.1653 5.0205 -1.7943 28 1 4.1845 -0.6150 -0.7102 29 1 4.5721 -0.2592 0.9995 30 1 5.9159 0.7671 -1.5192 31 1 6.6399 0.3973 0.0801 32 1 7.1106 2.3926 1.3569 33 1 5.8536 3.4272 1.6957 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095785894.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:50 Heat of formation + Delta-G solvation = -29.199446 kcal Electronic energy + Delta-G solvation = -16486.436832 eV Core-core repulsion = 13897.309738 eV Total energy + Delta-G solvation = -2589.127095 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.38880 -37.45283 -35.40011 -33.23813 -31.48915 -29.06581 -28.19534 -26.47093 -25.18658 -24.24278 -21.16687 -20.04722 -19.34227 -17.49876 -16.48602 -15.61878 -15.05487 -14.86605 -14.67853 -14.19933 -13.86264 -13.37109 -12.90259 -12.65884 -12.53821 -11.73728 -11.35819 -11.33859 -11.17829 -11.03117 -10.74444 -10.53120 -10.43902 -10.40804 -9.92729 -9.63911 -9.51660 -8.87399 -8.08826 -7.55105 -7.16740 -7.04484 -4.32845 2.68510 2.77357 3.14170 3.25737 3.34012 4.01571 4.34130 4.52117 5.15366 5.33594 5.49066 5.56244 5.65904 5.69889 5.80712 5.87134 5.98734 6.23668 6.27666 6.40140 6.48067 6.54936 6.70614 6.75024 7.10362 7.28040 7.36856 7.66942 7.72630 7.79969 7.80980 8.09457 8.16553 8.17354 8.46941 8.78144 8.91068 10.07484 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.022928 B = 0.010186 C = 0.007457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.907435 B = 2748.133334 C = 3753.739485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.331 6.331 3 C -0.008 4.008 4 C -0.151 4.151 5 C -0.193 4.193 6 C 0.097 3.903 7 C -0.522 4.522 8 H 0.070 0.930 9 C 0.039 3.961 10 N -0.802 5.802 11 Si 1.063 2.937 12 H -0.279 1.279 13 H -0.276 1.276 14 H -0.274 1.274 15 C -0.169 4.169 16 C -0.068 4.068 17 C -0.059 4.059 18 C -0.114 4.114 19 C 0.152 3.848 20 H 0.032 0.968 21 N -0.839 5.839 22 H 0.081 0.919 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.298 0.702 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.325 0.675 33 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 -4.572 1.546 5.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.247 6.247 3 C -0.051 4.051 4 C -0.170 4.170 5 C -0.212 4.212 6 C 0.094 3.906 7 C -0.551 4.551 8 H 0.088 0.912 9 C -0.182 4.182 10 N -0.426 5.426 11 Si 0.887 3.113 12 H -0.205 1.205 13 H -0.201 1.201 14 H -0.199 1.199 15 C -0.171 4.171 16 C -0.069 4.069 17 C -0.096 4.096 18 C -0.152 4.152 19 C 0.042 3.958 20 H 0.050 0.950 21 N -0.369 5.369 22 H 0.100 0.900 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.117 0.883 26 H 0.128 0.872 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.148 -3.771 1.571 4.243 hybrid contribution 0.475 -0.603 -0.317 0.830 sum 1.623 -4.374 1.254 4.831 Atomic orbital electron populations 1.22700 0.81147 1.01667 1.00271 1.85830 1.18965 1.28574 1.91334 1.18122 0.90208 0.83044 1.13731 1.20449 0.97528 0.92844 1.06223 1.20634 0.94522 0.95803 1.10271 1.17202 0.91002 0.91973 0.90432 1.20321 1.03333 0.93316 1.38083 0.91164 1.26920 0.92593 1.05671 0.93000 1.70454 1.25067 1.30163 1.16961 0.83682 0.77178 0.73519 0.76919 1.20450 1.20077 1.19898 1.19699 0.92761 0.92319 1.12306 1.19114 0.89737 0.95497 1.02581 1.20720 0.92387 0.95935 1.00524 1.22300 0.97516 0.95731 0.99698 1.20336 0.92401 0.94427 0.88630 0.95032 1.58856 1.15175 1.37906 1.24983 0.90042 0.94021 0.94016 0.88253 0.87200 0.88851 0.92481 0.91447 0.91804 0.91485 0.86403 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.80 101.05 0.99 1.61 16 2 O -0.33 -7.01 10.42 -18.72 -0.19 -7.20 16 3 C -0.01 -0.19 6.72 -38.71 -0.26 -0.45 16 4 C -0.15 -3.58 8.95 -39.89 -0.36 -3.93 16 5 C -0.19 -4.95 7.90 -39.29 -0.31 -5.26 16 6 C 0.10 2.53 5.30 -106.75 -0.57 1.97 16 7 C -0.52 -13.49 8.74 -37.84 -0.33 -13.82 16 8 H 0.07 1.75 7.30 -52.48 -0.38 1.37 16 9 C 0.04 0.98 4.92 -17.34 -0.09 0.90 16 10 N -0.80 -21.20 12.32 55.54 0.68 -20.51 16 11 Si 1.06 21.46 30.00 -169.99 -5.10 16.36 16 12 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 13 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 14 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 15 C -0.17 -4.09 5.60 -103.87 -0.58 -4.67 16 16 C -0.07 -1.60 6.07 -104.40 -0.63 -2.23 16 17 C -0.06 -1.15 6.70 -26.80 -0.18 -1.33 16 18 C -0.11 -2.04 6.81 -25.30 -0.17 -2.21 16 19 C 0.15 3.11 3.57 -67.82 -0.24 2.87 16 20 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 21 N -0.84 -15.41 9.27 -4.76 -0.04 -15.45 16 22 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.04 0.65 7.64 -51.93 -0.40 0.25 16 24 H 0.04 0.65 7.64 -51.93 -0.40 0.26 16 25 H 0.10 2.08 6.25 -52.48 -0.33 1.75 16 26 H 0.11 2.89 6.50 -52.49 -0.34 2.55 16 27 H 0.30 8.12 6.71 -40.82 -0.27 7.85 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 32 H 0.32 4.88 9.08 -39.29 -0.36 4.53 16 33 H 0.34 6.59 8.46 -39.29 -0.33 6.26 16 LS Contribution 272.76 15.07 4.11 4.11 Total: -1.00 -28.43 272.76 -7.41 -35.84 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -4.14 Total: 13.41 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: -2.73 Total: -26.56 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.64 Total: -35.96 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.19 Total: -7.20 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.10 Total: 16.36 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.43 -7.41 -35.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095785894.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.641 kcal (2) G-P(sol) polarization free energy of solvation -28.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds