Wall clock time and date at job start Mon Mar 30 2020 03:51:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.35671 * 117.00341 * 2 1
4 4 C 1.39185 * 119.67933 * 0.02562 * 3 2 1
5 5 C 1.36416 * 120.12766 * 179.70288 * 4 3 2
6 6 C 1.40738 * 119.70974 * 0.54377 * 5 4 3
7 7 C 1.41209 * 120.06469 * 179.74537 * 6 5 4
8 8 H 1.08003 * 120.00124 * 154.42428 * 7 6 5
9 9 C 1.39891 * 120.00111 * 334.42558 * 7 6 5
10 10 N 1.30879 * 120.00085 * 334.26182 * 9 7 6
11 11 Si 1.86798 * 120.00130 * 154.25813 * 9 7 6
12 12 H 1.48501 * 109.46951 * 89.99970 * 11 9 7
13 13 H 1.48504 * 109.47010 * 330.00483 * 11 9 7
14 14 H 1.48496 * 109.47509 * 210.00312 * 11 9 7
15 15 C 1.41074 * 119.87038 * 359.46838 * 6 5 4
16 16 C 1.36422 * 119.71711 * 0.24592 * 15 6 5
17 17 C 1.51438 * 109.98999 * 180.02562 * 16 15 6
18 18 C 1.54371 * 105.10187 * 342.88262 * 17 16 15
19 19 C 1.51377 * 130.20854 * 180.21446 * 15 6 5
20 20 H 1.09001 * 110.31517 * 315.99516 * 19 15 6
21 21 N 1.46894 * 110.31739 * 78.08900 * 19 15 6
22 22 H 1.09000 * 109.47211 * 179.97438 * 1 2 3
23 23 H 1.09000 * 109.46977 * 300.00436 * 1 2 3
24 24 H 1.09002 * 109.46794 * 59.99895 * 1 2 3
25 25 H 1.08003 * 119.94123 * 0.02562 * 4 3 2
26 26 H 1.08000 * 120.14768 * 180.29033 * 5 4 3
27 27 H 0.97001 * 119.99865 * 354.23682 * 10 9 7
28 28 H 1.08998 * 110.31377 * 223.97275 * 17 16 15
29 29 H 1.08999 * 110.40078 * 101.82705 * 17 16 15
30 30 H 1.09000 * 110.86610 * 267.91694 * 18 17 16
31 31 H 1.08991 * 111.05165 * 144.31385 * 18 17 16
32 32 H 1.00898 * 111.00060 * 180.02562 * 21 19 15
33 33 H 1.00901 * 111.00083 * 303.95429 * 21 19 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0451 1.2088 0.0000
4 6 1.2806 2.3719 0.0005
5 6 1.8904 3.5921 0.0067
6 6 3.2956 3.6696 0.0008
7 6 3.9347 4.9288 0.0017
8 1 4.9332 5.0274 0.4014
9 6 3.2745 6.0486 -0.5153
10 7 2.3416 5.8981 -1.4207
11 14 3.7246 7.7587 0.0868
12 1 4.8078 8.3138 -0.7639
13 1 4.1913 7.6810 1.4944
14 1 2.5325 8.6407 0.0085
15 6 4.0645 2.4869 0.0001
16 6 3.4398 1.2741 -0.0001
17 6 4.4678 0.1621 -0.0004
18 6 5.7867 0.8338 -0.4390
19 6 5.5664 2.2976 -0.0013
20 1 6.0332 2.9798 -0.7118
21 7 6.1092 2.5158 1.3461
22 1 -0.3634 -1.0277 -0.0005
23 1 -0.3633 0.5139 0.8899
24 1 -0.3633 0.5139 -0.8900
25 1 0.2024 2.3083 0.0014
26 1 1.2975 4.4948 0.0118
27 1 2.1653 5.0205 -1.7943
28 1 4.1845 -0.6150 -0.7102
29 1 4.5721 -0.2592 0.9995
30 1 5.9159 0.7671 -1.5192
31 1 6.6399 0.3973 0.0801
32 1 7.1106 2.3926 1.3569
33 1 5.8536 3.4272 1.6957
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000095785894.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:51:50
Heat of formation + Delta-G solvation = -29.199446 kcal
Electronic energy + Delta-G solvation = -16486.436832 eV
Core-core repulsion = 13897.309738 eV
Total energy + Delta-G solvation = -2589.127095 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 233.116 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-39.38880 -37.45283 -35.40011 -33.23813 -31.48915 -29.06581 -28.19534 -26.47093
-25.18658 -24.24278 -21.16687 -20.04722 -19.34227 -17.49876 -16.48602 -15.61878
-15.05487 -14.86605 -14.67853 -14.19933 -13.86264 -13.37109 -12.90259 -12.65884
-12.53821 -11.73728 -11.35819 -11.33859 -11.17829 -11.03117 -10.74444 -10.53120
-10.43902 -10.40804 -9.92729 -9.63911 -9.51660 -8.87399 -8.08826 -7.55105
-7.16740 -7.04484 -4.32845 2.68510 2.77357 3.14170 3.25737 3.34012
4.01571 4.34130 4.52117 5.15366 5.33594 5.49066 5.56244 5.65904
5.69889 5.80712 5.87134 5.98734 6.23668 6.27666 6.40140 6.48067
6.54936 6.70614 6.75024 7.10362 7.28040 7.36856 7.66942 7.72630
7.79969 7.80980 8.09457 8.16553 8.17354 8.46941 8.78144 8.91068
10.07484
Molecular weight = 233.12amu
Principal moments of inertia in cm(-1)
A = 0.022928 B = 0.010186 C = 0.007457
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1220.907435 B = 2748.133334 C = 3753.739485
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.038 3.962
2 O -0.331 6.331
3 C -0.008 4.008
4 C -0.151 4.151
5 C -0.193 4.193
6 C 0.097 3.903
7 C -0.522 4.522
8 H 0.070 0.930
9 C 0.039 3.961
10 N -0.802 5.802
11 Si 1.063 2.937
12 H -0.279 1.279
13 H -0.276 1.276
14 H -0.274 1.274
15 C -0.169 4.169
16 C -0.068 4.068
17 C -0.059 4.059
18 C -0.114 4.114
19 C 0.152 3.848
20 H 0.032 0.968
21 N -0.839 5.839
22 H 0.081 0.919
23 H 0.041 0.959
24 H 0.041 0.959
25 H 0.099 0.901
26 H 0.110 0.890
27 H 0.298 0.702
28 H 0.057 0.943
29 H 0.067 0.933
30 H 0.063 0.937
31 H 0.066 0.934
32 H 0.325 0.675
33 H 0.345 0.655
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.947 -4.572 1.546 5.204
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 O -0.247 6.247
3 C -0.051 4.051
4 C -0.170 4.170
5 C -0.212 4.212
6 C 0.094 3.906
7 C -0.551 4.551
8 H 0.088 0.912
9 C -0.182 4.182
10 N -0.426 5.426
11 Si 0.887 3.113
12 H -0.205 1.205
13 H -0.201 1.201
14 H -0.199 1.199
15 C -0.171 4.171
16 C -0.069 4.069
17 C -0.096 4.096
18 C -0.152 4.152
19 C 0.042 3.958
20 H 0.050 0.950
21 N -0.369 5.369
22 H 0.100 0.900
23 H 0.060 0.940
24 H 0.060 0.940
25 H 0.117 0.883
26 H 0.128 0.872
27 H 0.111 0.889
28 H 0.075 0.925
29 H 0.086 0.914
30 H 0.082 0.918
31 H 0.085 0.915
32 H 0.136 0.864
33 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges 1.148 -3.771 1.571 4.243
hybrid contribution 0.475 -0.603 -0.317 0.830
sum 1.623 -4.374 1.254 4.831
Atomic orbital electron populations
1.22700 0.81147 1.01667 1.00271 1.85830 1.18965 1.28574 1.91334
1.18122 0.90208 0.83044 1.13731 1.20449 0.97528 0.92844 1.06223
1.20634 0.94522 0.95803 1.10271 1.17202 0.91002 0.91973 0.90432
1.20321 1.03333 0.93316 1.38083 0.91164 1.26920 0.92593 1.05671
0.93000 1.70454 1.25067 1.30163 1.16961 0.83682 0.77178 0.73519
0.76919 1.20450 1.20077 1.19898 1.19699 0.92761 0.92319 1.12306
1.19114 0.89737 0.95497 1.02581 1.20720 0.92387 0.95935 1.00524
1.22300 0.97516 0.95731 0.99698 1.20336 0.92401 0.94427 0.88630
0.95032 1.58856 1.15175 1.37906 1.24983 0.90042 0.94021 0.94016
0.88253 0.87200 0.88851 0.92481 0.91447 0.91804 0.91485 0.86403
0.84179
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.62 9.80 101.05 0.99 1.61 16
2 O -0.33 -7.01 10.42 -18.72 -0.19 -7.20 16
3 C -0.01 -0.19 6.72 -38.71 -0.26 -0.45 16
4 C -0.15 -3.58 8.95 -39.89 -0.36 -3.93 16
5 C -0.19 -4.95 7.90 -39.29 -0.31 -5.26 16
6 C 0.10 2.53 5.30 -106.75 -0.57 1.97 16
7 C -0.52 -13.49 8.74 -37.84 -0.33 -13.82 16
8 H 0.07 1.75 7.30 -52.48 -0.38 1.37 16
9 C 0.04 0.98 4.92 -17.34 -0.09 0.90 16
10 N -0.80 -21.20 12.32 55.54 0.68 -20.51 16
11 Si 1.06 21.46 30.00 -169.99 -5.10 16.36 16
12 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16
13 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16
14 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16
15 C -0.17 -4.09 5.60 -103.87 -0.58 -4.67 16
16 C -0.07 -1.60 6.07 -104.40 -0.63 -2.23 16
17 C -0.06 -1.15 6.70 -26.80 -0.18 -1.33 16
18 C -0.11 -2.04 6.81 -25.30 -0.17 -2.21 16
19 C 0.15 3.11 3.57 -67.82 -0.24 2.87 16
20 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16
21 N -0.84 -15.41 9.27 -4.76 -0.04 -15.45 16
22 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16
23 H 0.04 0.65 7.64 -51.93 -0.40 0.25 16
24 H 0.04 0.65 7.64 -51.93 -0.40 0.26 16
25 H 0.10 2.08 6.25 -52.48 -0.33 1.75 16
26 H 0.11 2.89 6.50 -52.49 -0.34 2.55 16
27 H 0.30 8.12 6.71 -40.82 -0.27 7.85 16
28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
29 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16
30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
31 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16
32 H 0.32 4.88 9.08 -39.29 -0.36 4.53 16
33 H 0.34 6.59 8.46 -39.29 -0.33 6.26 16
LS Contribution 272.76 15.07 4.11 4.11
Total: -1.00 -28.43 272.76 -7.41 -35.84
By element:
Atomic # 1 Polarization: 17.54 SS G_CDS: -4.14 Total: 13.41 kcal
Atomic # 6 Polarization: -23.83 SS G_CDS: -2.73 Total: -26.56 kcal
Atomic # 7 Polarization: -36.60 SS G_CDS: 0.64 Total: -35.96 kcal
Atomic # 8 Polarization: -7.01 SS G_CDS: -0.19 Total: -7.20 kcal
Atomic # 14 Polarization: 21.46 SS G_CDS: -5.10 Total: 16.36 kcal
Total LS contribution 4.11 Total: 4.11 kcal
Total: -28.43 -7.41 -35.84 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000095785894.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.641 kcal
(2) G-P(sol) polarization free energy of solvation -28.430 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.789 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.840 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.199 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds