Wall clock time and date at job start Mon Mar 30 2020 03:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35640 * 117.00372 * 2 1 4 4 C 1.38294 * 120.30541 * 0.02562 * 3 2 1 5 5 C 1.38629 * 120.37246 * 180.02562 * 4 3 2 6 6 C 1.38904 * 120.34488 * 359.97438 * 5 4 3 7 7 C 1.36798 * 120.33340 * 359.97438 * 6 5 4 8 8 C 1.40570 * 120.23854 * 359.97438 * 7 6 5 9 9 C 1.41151 * 120.33637 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00089 * 204.61471 * 9 8 7 11 11 C 1.39937 * 120.00048 * 24.62079 * 9 8 7 12 12 N 1.30861 * 119.99776 * 17.69909 * 11 9 8 13 13 Si 1.86798 * 120.00074 * 197.69957 * 11 9 8 14 14 H 1.48495 * 109.47224 * 59.99642 * 13 11 9 15 15 H 1.48502 * 109.47171 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47066 * 300.00050 * 13 11 9 17 17 C 1.51466 * 109.63329 * 179.97438 * 6 5 4 18 18 C 1.54307 * 105.19804 * 17.28890 * 17 6 5 19 19 C 1.51469 * 130.03513 * 179.97438 * 5 4 3 20 20 H 1.09001 * 110.38287 * 43.75823 * 19 5 4 21 21 N 1.46904 * 110.29752 * 281.66121 * 19 5 4 22 22 H 1.09006 * 109.46550 * 299.99133 * 1 2 3 23 23 H 1.08999 * 109.47162 * 59.99198 * 1 2 3 24 24 H 1.09001 * 109.47112 * 179.97438 * 1 2 3 25 25 H 1.08003 * 119.81270 * 0.05283 * 4 3 2 26 26 H 1.07998 * 119.88021 * 179.72497 * 7 6 5 27 27 H 0.97006 * 119.99687 * 179.97438 * 12 11 9 28 28 H 1.08996 * 110.29940 * 136.22020 * 17 6 5 29 29 H 1.08997 * 110.30212 * 258.35977 * 17 6 5 30 30 H 1.09004 * 110.80211 * 91.68387 * 18 17 6 31 31 H 1.09000 * 110.80925 * 215.18679 * 18 17 6 32 32 H 1.00900 * 110.99770 * 182.76443 * 21 19 5 33 33 H 1.00898 * 111.00102 * 306.72455 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2979 2.3724 0.0005 5 6 1.9259 3.6083 0.0000 6 6 3.3125 3.6909 -0.0005 7 6 4.0724 2.5533 0.0000 8 6 3.4557 1.2901 0.0016 9 6 4.2377 0.1150 0.0016 10 1 3.8286 -0.8059 -0.3868 11 6 5.5431 0.1433 0.5050 12 7 5.9251 1.1277 1.2780 13 14 6.7404 -1.2241 0.0735 14 1 6.9247 -1.2742 -1.3991 15 1 8.0475 -0.9624 0.7280 16 1 6.2004 -2.5232 0.5492 17 6 3.7357 5.1452 -0.0017 18 6 2.4837 5.9312 0.4408 19 6 1.3334 5.0023 -0.0001 20 1 0.5060 5.0631 0.7068 21 7 0.8773 5.3620 -1.3494 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2193 2.3182 0.0018 26 1 5.1499 2.6260 -0.0049 27 1 6.8299 1.1470 1.6273 28 1 4.5503 5.3025 0.7052 29 1 4.0391 5.4500 -1.0032 30 1 2.4759 6.0701 1.5219 31 1 2.4265 6.8901 -0.0743 32 1 0.5216 6.3060 -1.3711 33 1 1.6157 5.2381 -2.0258 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238398675.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:54 Heat of formation + Delta-G solvation = -25.025200 kcal Electronic energy + Delta-G solvation = -16330.363193 eV Core-core repulsion = 13741.417107 eV Total energy + Delta-G solvation = -2588.946086 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.17387 -37.55330 -35.05524 -33.02070 -31.29834 -29.51859 -27.93498 -26.45724 -25.33068 -24.18730 -21.19974 -19.62373 -19.52751 -17.10736 -16.27642 -15.66989 -15.28469 -14.65443 -14.53912 -14.23399 -13.79196 -13.32630 -12.89255 -12.70437 -12.02693 -11.81980 -11.46723 -11.32926 -11.17983 -11.06275 -10.87505 -10.62558 -10.52957 -10.40899 -9.68172 -9.57052 -9.32769 -9.04397 -8.22106 -7.39137 -6.89061 -6.63269 -4.20350 2.73311 3.01660 3.10157 3.13694 3.21147 3.98410 4.54298 4.60469 5.15259 5.30270 5.35999 5.51573 5.65505 5.84196 5.89712 6.04312 6.06021 6.13761 6.27679 6.31697 6.46033 6.49234 6.60841 6.99257 7.14135 7.38015 7.43598 7.57277 7.75640 7.77445 7.88136 8.16041 8.24720 8.45756 8.73173 8.88275 9.12070 10.23398 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.024782 B = 0.009269 C = 0.007064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.594998 B = 3020.051749 C = 3962.535346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.312 6.312 3 C 0.007 3.993 4 C -0.141 4.141 5 C -0.191 4.191 6 C -0.100 4.100 7 C -0.137 4.137 8 C 0.105 3.895 9 C -0.444 4.444 10 H 0.083 0.917 11 C 0.073 3.927 12 N -0.795 5.795 13 Si 0.909 3.091 14 H -0.264 1.264 15 H -0.279 1.279 16 H -0.265 1.265 17 C -0.072 4.072 18 C -0.152 4.152 19 C 0.149 3.851 20 H 0.067 0.933 21 N -0.839 5.839 22 H 0.039 0.961 23 H 0.040 0.960 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.122 0.878 27 H 0.280 0.720 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.326 0.674 33 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.961 4.738 -1.728 6.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.226 6.226 3 C -0.038 4.038 4 C -0.161 4.161 5 C -0.193 4.193 6 C -0.101 4.101 7 C -0.156 4.156 8 C 0.102 3.898 9 C -0.474 4.474 10 H 0.101 0.899 11 C -0.144 4.144 12 N -0.421 5.421 13 Si 0.734 3.266 14 H -0.189 1.189 15 H -0.204 1.204 16 H -0.190 1.190 17 C -0.109 4.109 18 C -0.192 4.192 19 C 0.038 3.962 20 H 0.085 0.915 21 N -0.367 5.367 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.099 0.901 25 H 0.112 0.888 26 H 0.140 0.860 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.205 4.036 -1.493 6.017 hybrid contribution 1.055 0.348 0.017 1.111 sum -3.150 4.384 -1.476 5.597 Atomic orbital electron populations 1.22721 0.81790 1.01604 0.99986 1.85958 1.18182 1.28073 1.90432 1.19061 0.92278 0.82559 1.09866 1.20032 0.97214 0.91474 1.07357 1.19280 0.93279 0.91752 1.14998 1.19843 0.93915 0.93410 1.02909 1.20285 0.99404 0.89510 1.06447 1.16912 0.87328 0.93665 0.91846 1.19400 0.96424 0.96617 1.34954 0.89940 1.25904 0.98902 0.96841 0.92734 1.69843 1.19155 1.30586 1.22522 0.86352 0.78872 0.81513 0.79906 1.18865 1.20442 1.18986 1.20845 0.96994 0.93103 1.00000 1.23023 0.97473 0.97548 1.01171 1.20520 0.94254 0.92143 0.89279 0.91456 1.58955 1.41328 1.29450 1.06930 0.94230 0.94169 0.90123 0.88750 0.86050 0.90929 0.92029 0.92316 0.91476 0.92325 0.86196 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.81 101.05 0.99 1.62 16 2 O -0.31 -7.45 9.79 -18.62 -0.18 -7.64 16 3 C 0.01 0.17 6.72 -38.39 -0.26 -0.09 16 4 C -0.14 -3.30 9.04 -39.42 -0.36 -3.66 16 5 C -0.19 -4.25 5.70 -103.85 -0.59 -4.85 16 6 C -0.10 -2.31 6.07 -104.52 -0.63 -2.94 16 7 C -0.14 -3.57 8.64 -39.22 -0.34 -3.91 16 8 C 0.11 2.89 5.58 -106.74 -0.60 2.29 16 9 C -0.44 -12.18 8.73 -37.84 -0.33 -12.51 16 10 H 0.08 2.25 7.65 -52.49 -0.40 1.84 16 11 C 0.07 1.87 5.14 -17.33 -0.09 1.78 16 12 N -0.80 -20.73 10.96 55.55 0.61 -20.12 16 13 Si 0.91 19.12 29.59 -169.99 -5.03 14.08 16 14 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 15 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 16 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 17 C -0.07 -1.34 6.77 -26.82 -0.18 -1.53 16 18 C -0.15 -2.45 6.75 -25.37 -0.17 -2.62 16 19 C 0.15 2.66 4.01 -67.81 -0.27 2.39 16 20 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 21 N -0.84 -13.28 9.29 -4.75 -0.04 -13.33 16 22 H 0.04 0.67 7.67 -51.93 -0.40 0.27 16 23 H 0.04 0.68 7.67 -51.93 -0.40 0.28 16 24 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.09 2.01 6.29 -52.48 -0.33 1.68 16 26 H 0.12 3.26 6.16 -52.49 -0.32 2.94 16 27 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 32 H 0.33 4.16 9.04 -39.29 -0.36 3.81 16 33 H 0.34 5.43 8.96 -39.29 -0.35 5.08 16 LS Contribution 274.42 15.07 4.14 4.14 Total: -1.00 -28.80 274.42 -7.56 -36.36 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -4.23 Total: 10.52 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -2.83 Total: -24.02 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.56 Total: -33.45 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -0.18 Total: -7.64 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.80 -7.56 -36.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238398675.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.335 kcal (2) G-P(sol) polarization free energy of solvation -28.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds