Wall clock time and date at job start Mon Mar 30 2020 03:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35640 * 117.00372 * 2 1 4 4 C 1.38294 * 120.30541 * 0.02562 * 3 2 1 5 5 C 1.38629 * 120.37246 * 180.02562 * 4 3 2 6 6 C 1.38904 * 120.34488 * 359.97438 * 5 4 3 7 7 C 1.36798 * 120.33340 * 359.97438 * 6 5 4 8 8 C 1.40570 * 120.23854 * 359.97438 * 7 6 5 9 9 C 1.41151 * 120.33637 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00089 * 204.61471 * 9 8 7 11 11 C 1.39937 * 120.00048 * 24.62079 * 9 8 7 12 12 N 1.30861 * 119.99776 * 17.69909 * 11 9 8 13 13 Si 1.86798 * 120.00074 * 197.69957 * 11 9 8 14 14 H 1.48495 * 109.47224 * 59.99642 * 13 11 9 15 15 H 1.48502 * 109.47171 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47066 * 300.00050 * 13 11 9 17 17 C 1.51466 * 109.63329 * 179.97438 * 6 5 4 18 18 C 1.54307 * 105.19804 * 17.28890 * 17 6 5 19 19 C 1.51469 * 130.03513 * 179.97438 * 5 4 3 20 20 H 1.09001 * 110.38287 * 43.75823 * 19 5 4 21 21 N 1.46904 * 110.29752 * 281.66121 * 19 5 4 22 22 H 1.09006 * 109.46550 * 299.99133 * 1 2 3 23 23 H 1.08999 * 109.47162 * 59.99198 * 1 2 3 24 24 H 1.09001 * 109.47112 * 179.97438 * 1 2 3 25 25 H 1.08003 * 119.81270 * 0.05283 * 4 3 2 26 26 H 1.07998 * 119.88021 * 179.72497 * 7 6 5 27 27 H 0.97006 * 119.99687 * 179.97438 * 12 11 9 28 28 H 1.08996 * 110.29940 * 136.22020 * 17 6 5 29 29 H 1.08997 * 110.30212 * 258.35977 * 17 6 5 30 30 H 1.09004 * 110.80211 * 91.68387 * 18 17 6 31 31 H 1.09000 * 110.80925 * 215.18679 * 18 17 6 32 32 H 1.00900 * 110.99770 * 182.76443 * 21 19 5 33 33 H 1.00898 * 111.00102 * 306.72455 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2979 2.3724 0.0005 5 6 1.9259 3.6083 0.0000 6 6 3.3125 3.6909 -0.0005 7 6 4.0724 2.5533 0.0000 8 6 3.4557 1.2901 0.0016 9 6 4.2377 0.1150 0.0016 10 1 3.8286 -0.8059 -0.3868 11 6 5.5431 0.1433 0.5050 12 7 5.9251 1.1277 1.2780 13 14 6.7404 -1.2241 0.0735 14 1 6.9247 -1.2742 -1.3991 15 1 8.0475 -0.9624 0.7280 16 1 6.2004 -2.5232 0.5492 17 6 3.7357 5.1452 -0.0017 18 6 2.4837 5.9312 0.4408 19 6 1.3334 5.0023 -0.0001 20 1 0.5060 5.0631 0.7068 21 7 0.8773 5.3620 -1.3494 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2193 2.3182 0.0018 26 1 5.1499 2.6260 -0.0049 27 1 6.8299 1.1470 1.6273 28 1 4.5503 5.3025 0.7052 29 1 4.0391 5.4500 -1.0032 30 1 2.4759 6.0701 1.5219 31 1 2.4265 6.8901 -0.0743 32 1 0.5216 6.3060 -1.3711 33 1 1.6157 5.2381 -2.0258 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238398675.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:53 Heat of formation + Delta-G solvation = -44.099588 kcal Electronic energy + Delta-G solvation = -16331.190320 eV Core-core repulsion = 13741.417107 eV Total energy + Delta-G solvation = -2589.773213 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.90077 -39.21127 -36.82661 -34.79664 -32.80127 -31.35317 -29.57172 -28.08253 -26.99610 -25.82973 -22.95733 -21.34991 -21.13282 -19.01078 -17.96846 -17.34151 -16.89857 -16.25584 -16.12449 -15.70815 -15.51430 -14.87084 -14.52717 -14.32186 -13.78690 -13.45840 -13.08320 -12.98271 -12.83737 -12.71242 -12.37785 -12.23929 -12.10336 -11.98738 -11.51243 -11.26863 -11.11894 -10.88300 -9.48792 -9.29917 -8.76573 -8.49627 -6.19962 0.91237 1.11106 1.37070 1.47962 1.51891 2.22871 2.70033 2.92564 3.62117 3.78379 3.88855 3.98311 4.27943 4.41777 4.45582 4.48166 4.57519 4.66579 4.73597 4.91373 4.98896 5.05099 5.17212 5.23345 5.26716 5.47935 5.62675 5.85092 5.88271 6.21767 6.32375 6.36134 6.56028 6.78641 6.80922 6.93393 7.25798 8.36788 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.024782 B = 0.009269 C = 0.007064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.594998 B = 3020.051749 C = 3962.535346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.340 6.340 3 C -0.009 4.009 4 C -0.151 4.151 5 C -0.186 4.186 6 C -0.115 4.115 7 C -0.158 4.158 8 C 0.064 3.936 9 C -0.486 4.486 10 H 0.068 0.932 11 C 0.034 3.966 12 N -0.827 5.827 13 Si 0.980 3.020 14 H -0.261 1.261 15 H -0.264 1.264 16 H -0.263 1.263 17 C -0.072 4.072 18 C -0.139 4.139 19 C 0.152 3.848 20 H 0.077 0.923 21 N -0.840 5.840 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.112 0.888 25 H 0.115 0.885 26 H 0.103 0.897 27 H 0.287 0.713 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.349 0.651 33 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 6.286 -2.016 8.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.255 6.255 3 C -0.053 4.053 4 C -0.170 4.170 5 C -0.187 4.187 6 C -0.116 4.116 7 C -0.178 4.178 8 C 0.062 3.938 9 C -0.516 4.516 10 H 0.086 0.914 11 C -0.180 4.180 12 N -0.453 5.453 13 Si 0.801 3.199 14 H -0.186 1.186 15 H -0.188 1.188 16 H -0.187 1.187 17 C -0.109 4.109 18 C -0.179 4.179 19 C 0.041 3.959 20 H 0.095 0.905 21 N -0.370 5.370 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.131 0.869 25 H 0.133 0.867 26 H 0.121 0.879 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.164 0.836 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.159 5.610 -1.781 7.827 hybrid contribution 1.156 -0.048 0.093 1.161 sum -4.003 5.562 -1.688 7.057 Atomic orbital electron populations 1.23051 0.78762 1.04094 1.00770 1.85899 1.21383 1.27799 1.90434 1.19271 0.92237 0.83888 1.09898 1.20329 0.98251 0.91361 1.07083 1.19944 0.93380 0.93715 1.11692 1.20348 0.94518 0.95018 1.01675 1.20275 0.98872 0.90573 1.08065 1.17318 0.88788 0.94358 0.93344 1.19499 0.98231 0.96423 1.37443 0.91409 1.26690 0.99896 0.99426 0.91982 1.69889 1.19867 1.32341 1.23244 0.85293 0.76823 0.78181 0.79627 1.18585 1.18809 1.18745 1.20927 0.98424 0.90370 1.01151 1.23005 0.94615 0.98264 1.01975 1.20484 0.95077 0.89599 0.90718 0.90513 1.58801 1.41228 1.31357 1.05595 0.93381 0.93184 0.86949 0.86686 0.87916 0.90256 0.92122 0.90669 0.90910 0.88619 0.83633 0.84778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 9.81 113.37 1.11 2.09 16 2 O -0.34 -16.63 9.79 -89.54 -0.88 -17.50 16 3 C -0.01 -0.45 6.72 23.04 0.15 -0.30 16 4 C -0.15 -7.00 9.04 22.38 0.20 -6.79 16 5 C -0.19 -8.03 5.70 -19.37 -0.11 -8.14 16 6 C -0.11 -5.30 6.07 -19.80 -0.12 -5.42 16 7 C -0.16 -8.59 8.64 22.50 0.19 -8.39 16 8 C 0.06 3.70 5.58 -21.24 -0.12 3.59 16 9 C -0.49 -28.16 8.73 23.40 0.20 -27.95 16 10 H 0.07 3.94 7.65 -2.91 -0.02 3.92 16 11 C 0.03 1.80 5.14 85.25 0.44 2.24 16 12 N -0.83 -44.81 10.96 21.83 0.24 -44.57 16 13 Si 0.98 40.36 29.59 68.60 2.03 42.39 16 14 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 15 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 16 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 17 C -0.07 -2.52 6.77 30.54 0.21 -2.31 16 18 C -0.14 -3.92 6.75 31.47 0.21 -3.71 16 19 C 0.15 4.94 4.01 44.85 0.18 5.12 16 20 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 21 N -0.84 -23.42 9.29 -168.94 -1.57 -24.99 16 22 H 0.05 1.57 7.67 -2.38 -0.02 1.55 16 23 H 0.05 1.62 7.67 -2.39 -0.02 1.60 16 24 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 25 H 0.12 4.73 6.29 -2.91 -0.02 4.71 16 26 H 0.10 5.83 6.16 -2.91 -0.02 5.81 16 27 H 0.29 14.04 8.30 -92.70 -0.77 13.27 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 31 H 0.10 2.05 8.06 -2.39 -0.02 2.03 16 32 H 0.35 7.28 9.04 -89.69 -0.81 6.47 16 33 H 0.34 9.73 8.96 -89.70 -0.80 8.93 16 Total: -1.00 -65.42 274.42 1.90 -63.51 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: -0.47 Total: 31.14 kcal Atomic # 6 Polarization: -52.53 SS G_CDS: 2.56 Total: -49.98 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -1.33 Total: -69.57 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.88 Total: -17.50 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -65.42 1.90 -63.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238398675.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.415 kcal (2) G-P(sol) polarization free energy of solvation -65.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds