Wall clock time and date at job start Mon Mar 30 2020 02:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37977 * 119.87602 * 2 1 4 4 C 1.38248 * 120.35086 * 179.78835 * 3 2 1 5 5 C 1.50697 * 120.11625 * 180.45528 * 4 3 2 6 6 H 1.09000 * 109.46969 * 200.00055 * 5 4 3 7 7 N 1.46895 * 109.46977 * 319.99775 * 5 4 3 8 8 C 1.50700 * 109.47231 * 79.99968 * 5 4 3 9 9 H 1.08001 * 119.99733 * 0.02562 * 8 5 4 10 10 C 1.37877 * 120.00094 * 179.97438 * 8 5 4 11 11 N 1.31516 * 119.99902 * 0.02562 * 10 8 5 12 12 Si 1.86794 * 120.00348 * 180.02562 * 10 8 5 13 13 H 1.48500 * 109.47094 * 89.99656 * 12 10 8 14 14 H 1.48501 * 109.47416 * 209.99965 * 12 10 8 15 15 H 1.48498 * 109.46942 * 329.99902 * 12 10 8 16 16 C 1.38399 * 119.76275 * 0.43210 * 4 3 2 17 17 C 1.37685 * 119.97900 * 359.90663 * 16 4 3 18 18 C 1.38922 * 120.79240 * 359.79265 * 17 16 4 19 19 O 1.36135 * 111.23796 * 180.67748 * 18 17 16 20 20 C 1.43765 * 109.25317 * 341.10087 * 19 18 17 21 21 C 1.51648 * 132.17970 * 179.45462 * 17 16 4 22 22 H 1.09001 * 109.46645 * 90.00078 * 1 2 3 23 23 H 1.09003 * 109.46994 * 209.99652 * 1 2 3 24 24 H 1.08998 * 109.47480 * 329.99621 * 1 2 3 25 25 H 1.08002 * 119.82804 * 0.07272 * 3 2 1 26 26 H 1.00899 * 111.00544 * 60.00737 * 7 5 4 27 27 H 1.00907 * 110.99983 * 183.95457 * 7 5 4 28 28 H 0.97001 * 120.00325 * 180.02562 * 11 10 8 29 29 H 1.08004 * 120.00196 * 179.97438 * 16 4 3 30 30 H 1.09000 * 110.74453 * 269.36980 * 20 19 18 31 31 H 1.08994 * 110.90608 * 146.09609 * 20 19 18 32 32 H 1.09007 * 110.93975 * 313.93273 * 21 17 16 33 33 H 1.09003 * 110.94434 * 77.58694 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1964 0.0000 4 6 3.5767 1.2079 0.0044 5 6 4.3220 2.5176 0.0147 6 1 5.3421 2.3579 -0.3345 7 7 3.6449 3.4733 -0.8718 8 6 4.3516 3.0677 1.4174 9 1 3.8784 2.5231 2.2211 10 6 4.9836 4.2657 1.6750 11 7 5.5603 4.9286 0.6963 12 14 5.0210 4.9473 3.4137 13 1 6.2283 4.4440 4.1168 14 1 5.0600 6.4309 3.3632 15 1 3.8044 4.5087 4.1435 16 6 4.2737 0.0122 -0.0002 17 6 3.5898 -1.1828 -0.0072 18 6 2.2008 -1.2073 -0.0054 19 8 1.7301 -2.4847 0.0017 20 6 2.7706 -3.3757 -0.4346 21 6 4.0594 -2.6246 -0.0242 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 1.6495 2.1289 0.0012 26 1 2.6967 3.6383 -0.5690 27 1 4.1607 4.3384 -0.9325 28 1 6.0053 5.7713 0.8775 29 1 5.3537 0.0166 0.0028 30 1 2.7321 -3.5145 -1.5150 31 1 2.7022 -4.3346 0.0791 32 1 4.8468 -2.7692 -0.7639 33 1 4.3946 -2.9369 0.9649 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238509437.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:17 Heat of formation + Delta-G solvation = -38.120685 kcal Electronic energy + Delta-G solvation = -16113.983591 eV Core-core repulsion = 13524.469643 eV Total energy + Delta-G solvation = -2589.513949 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.94966 -38.98185 -36.25938 -34.39621 -33.44589 -31.40859 -29.83859 -28.16931 -27.47576 -24.65989 -23.98964 -21.72194 -21.20204 -18.59959 -18.21175 -17.48458 -17.03189 -16.91244 -16.19517 -14.94300 -14.85307 -14.71201 -14.53945 -14.28936 -13.93933 -13.67462 -13.34204 -13.31439 -12.97762 -12.82331 -12.70452 -12.54958 -12.49502 -12.03096 -11.68832 -11.43882 -11.37473 -10.70273 -9.51260 -9.24793 -8.78405 -8.11047 -6.39105 0.46192 0.56044 1.36037 1.38136 1.48126 2.35055 2.43422 2.87404 3.04346 3.57897 3.76752 3.99312 4.15940 4.22897 4.43353 4.48936 4.55437 4.66583 4.71092 4.83869 4.87318 4.90552 4.96171 5.02445 5.23886 5.42919 5.48600 5.60199 5.65745 5.75292 5.95914 6.12356 6.38705 6.62933 6.91760 7.11200 7.37597 8.81323 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.033685 B = 0.006800 C = 0.006525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.034704 B = 4116.555275 C = 4290.319678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.113 4.113 3 C -0.089 4.089 4 C -0.071 4.071 5 C 0.249 3.751 6 H 0.011 0.989 7 N -0.841 5.841 8 C -0.559 4.559 9 H 0.044 0.956 10 C 0.024 3.976 11 N -0.915 5.915 12 Si 0.958 3.042 13 H -0.277 1.277 14 H -0.278 1.278 15 H -0.273 1.273 16 C -0.099 4.099 17 C -0.178 4.178 18 C 0.068 3.932 19 O -0.320 6.320 20 C 0.050 3.950 21 C -0.105 4.105 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.126 0.874 26 H 0.318 0.682 27 H 0.345 0.655 28 H 0.268 0.732 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.105 0.895 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.934 -13.025 -1.473 14.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.108 4.108 4 C -0.072 4.072 5 C 0.139 3.861 6 H 0.029 0.971 7 N -0.370 5.370 8 C -0.598 4.598 9 H 0.063 0.937 10 C -0.177 4.177 11 N -0.555 5.555 12 Si 0.783 3.217 13 H -0.203 1.203 14 H -0.203 1.203 15 H -0.198 1.198 16 C -0.118 4.118 17 C -0.179 4.179 18 C 0.023 3.977 19 O -0.235 6.235 20 C -0.024 4.024 21 C -0.142 4.142 22 H 0.096 0.904 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.143 0.857 26 H 0.129 0.871 27 H 0.160 0.840 28 H 0.078 0.922 29 H 0.134 0.866 30 H 0.104 0.896 31 H 0.152 0.848 32 H 0.124 0.876 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.918 -13.505 -2.051 14.887 hybrid contribution 0.628 1.390 1.702 2.285 sum -5.290 -12.116 -0.349 13.225 Atomic orbital electron populations 1.20644 0.89049 1.02982 1.02858 1.19375 0.97532 0.89245 1.05219 1.20580 0.93473 0.96738 0.99963 1.20189 0.94375 0.95252 0.97408 1.17714 0.91538 0.86825 0.90041 0.97083 1.59494 1.05747 1.18024 1.53766 1.22032 1.36161 1.06177 0.95451 0.93722 1.25726 0.94003 0.96983 1.00958 1.69839 1.36492 1.16150 1.33011 0.85562 0.78437 0.77517 0.80141 1.20254 1.20319 1.19759 1.20216 0.99649 0.90636 1.01252 1.21005 0.93928 0.96291 1.06681 1.19356 0.91968 0.85626 1.00741 1.86717 1.40042 1.13493 1.83214 1.24071 0.83247 0.93645 1.01430 1.21871 0.99485 0.88545 1.04295 0.90443 0.91305 0.90876 0.85660 0.87134 0.84017 0.92230 0.86633 0.89579 0.84798 0.87620 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.77 9.98 71.24 0.71 -2.06 16 2 C -0.11 -4.07 5.90 -19.68 -0.12 -4.19 16 3 C -0.09 -3.65 8.92 22.21 0.20 -3.45 16 4 C -0.07 -3.25 4.90 -19.82 -0.10 -3.35 16 5 C 0.25 12.91 2.95 43.42 0.13 13.04 16 6 H 0.01 0.64 8.01 -2.39 -0.02 0.62 16 7 N -0.84 -41.29 9.02 -174.97 -1.58 -42.87 16 8 C -0.56 -30.83 8.70 25.60 0.22 -30.60 16 9 H 0.04 2.51 7.74 -2.91 -0.02 2.49 16 10 C 0.02 1.28 5.38 84.65 0.46 1.74 16 11 N -0.92 -51.01 11.54 21.45 0.25 -50.76 16 12 Si 0.96 43.22 29.54 68.60 2.03 45.24 16 13 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 14 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 16 C -0.10 -4.06 9.66 22.18 0.21 -3.85 16 17 C -0.18 -6.21 6.27 -19.53 -0.12 -6.34 16 18 C 0.07 2.37 6.74 22.68 0.15 2.53 16 19 O -0.32 -9.56 10.97 -95.09 -1.04 -10.60 16 20 C 0.05 1.03 8.01 72.56 0.58 1.61 16 21 C -0.11 -2.50 7.12 30.73 0.22 -2.28 16 22 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.07 1.81 8.01 -2.39 -0.02 1.79 16 24 H 0.07 1.89 8.08 -2.39 -0.02 1.87 16 25 H 0.13 4.98 6.66 -2.91 -0.02 4.96 16 26 H 0.32 14.67 7.34 -89.69 -0.66 14.01 16 27 H 0.35 18.07 7.08 -89.69 -0.63 17.44 16 28 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 29 H 0.12 4.62 8.04 -2.91 -0.02 4.59 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.11 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -62.20 276.90 2.04 -60.17 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.16 Total: 36.03 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 2.55 Total: -37.20 kcal Atomic # 7 Polarization: -92.30 SS G_CDS: -1.33 Total: -93.63 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -1.04 Total: -10.60 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -62.20 2.04 -60.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238509437.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.046 kcal (2) G-P(sol) polarization free energy of solvation -62.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds