Wall clock time and date at job start Mon Mar 30 2020 03:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.69598 * 60.57051 * 9 7 2 11 11 N 1.47283 * 109.70180 * 300.00000 * 9 7 2 12 12 C 1.46948 * 111.52928 * 188.85816 * 11 9 7 13 13 C 1.53569 * 109.58899 * 71.25465 * 12 11 9 14 14 C 1.50667 * 107.81158 * 311.20056 * 13 12 11 15 15 C 1.35145 * 123.58507 * 15.65336 * 14 13 12 16 16 N 1.33247 * 107.91108 * 180.18379 * 15 14 13 17 17 C 1.31199 * 109.16425 * 359.95235 * 16 15 14 18 18 N 1.35145 * 108.81882 * 359.91167 * 17 16 15 19 19 C 1.47101 * 110.99001 * 180.25914 * 18 17 16 20 20 C 1.54358 * 105.60170 * 342.76449 * 19 18 17 21 21 C 1.51506 * 141.20931 * 179.78627 * 17 16 15 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.00896 * 110.99866 * 313.20112 * 11 9 7 24 24 H 1.08998 * 109.45238 * 191.28999 * 12 11 9 25 25 H 1.09002 * 109.45242 * 311.24460 * 12 11 9 26 26 H 1.09003 * 109.79217 * 70.77719 * 13 12 11 27 27 H 1.08998 * 109.79586 * 191.62198 * 13 12 11 28 28 H 1.08999 * 110.21864 * 101.79503 * 19 18 17 29 29 H 1.08995 * 110.22219 * 223.73111 * 19 18 17 30 30 H 1.08997 * 110.96669 * 267.74772 * 20 19 18 31 31 H 1.08999 * 110.99972 * 144.00260 * 20 19 18 32 32 H 1.09001 * 110.46734 * 315.38277 * 21 17 16 33 33 H 1.08995 * 110.47276 * 77.99382 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6311 -2.5654 -0.8935 11 7 0.4020 -2.5823 1.2011 12 6 -0.1895 -3.9190 1.3517 13 6 0.9011 -4.9222 1.7549 14 6 2.0678 -4.7350 0.8200 15 6 2.2266 -3.6496 0.0306 16 7 3.3522 -3.8095 -0.6643 17 6 3.9019 -4.9547 -0.3363 18 7 3.1278 -5.5600 0.5915 19 6 3.7051 -6.8501 0.9991 20 6 4.7275 -7.2129 -0.0989 21 6 5.1054 -5.8198 -0.6502 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9177 -2.3198 2.0276 24 1 -0.9594 -3.8905 2.1228 25 1 -0.6344 -4.2278 0.4058 26 1 1.2162 -4.7323 2.7809 27 1 0.5179 -5.9389 1.6679 28 1 4.2058 -6.7512 1.9623 29 1 2.9263 -7.6106 1.0549 30 1 4.2672 -7.8270 -0.8729 31 1 5.5973 -7.7129 0.3270 32 1 5.2701 -5.8677 -1.7267 33 1 5.9920 -5.4374 -0.1445 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259980812.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:39 Heat of formation + Delta-G solvation = 71.345387 kcal Electronic energy + Delta-G solvation = -16580.658222 eV Core-core repulsion = 14028.183830 eV Total energy + Delta-G solvation = -2552.474392 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.03046 -37.36274 -35.20182 -33.02783 -31.46349 -29.22012 -28.33493 -26.78540 -24.77899 -22.57785 -21.98755 -20.78938 -19.52971 -18.77491 -16.96805 -16.31971 -15.45900 -14.80583 -13.99597 -13.82406 -13.57829 -13.55481 -13.31321 -13.11960 -12.63730 -12.25767 -12.06591 -11.76811 -11.66129 -11.11592 -10.95903 -10.64552 -10.46986 -10.35307 -9.92249 -9.15151 -8.93876 -8.37366 -8.21388 -7.43650 -7.24840 -6.05084 -3.84320 2.51980 3.07992 3.58325 3.61107 3.79571 3.87161 4.06955 4.50340 4.59561 4.73285 4.78471 5.09860 5.24881 5.27108 5.36766 5.46231 5.53254 5.64748 5.71914 5.84110 5.85056 5.92301 6.17575 6.22919 6.42856 6.53923 6.96471 7.27288 7.51962 7.67234 8.10744 8.30861 8.67836 8.83059 8.96283 9.19680 9.94497 11.34427 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.032509 B = 0.008306 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.097353 B = 3370.080793 C = 4060.204380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.033 3.967 3 Si 1.066 2.934 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.593 4.593 8 H 0.053 0.947 9 C 0.279 3.721 10 H 0.045 0.955 11 N -0.667 5.667 12 C 0.059 3.941 13 C -0.070 4.070 14 C -0.048 4.048 15 C 0.039 3.961 16 N -0.450 5.450 17 C 0.149 3.851 18 N -0.477 5.477 19 C 0.107 3.893 20 C -0.128 4.128 21 C -0.034 4.034 22 H 0.289 0.711 23 H 0.335 0.665 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.573 -15.363 3.113 16.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.896 3.104 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.633 4.633 8 H 0.072 0.928 9 C 0.171 3.829 10 H 0.062 0.938 11 N -0.296 5.296 12 C -0.072 4.072 13 C -0.111 4.111 14 C -0.159 4.159 15 C -0.095 4.095 16 N -0.168 5.168 17 C -0.111 4.111 18 N -0.163 5.163 19 C -0.015 4.015 20 C -0.166 4.166 21 C -0.073 4.073 22 H 0.101 0.899 23 H 0.154 0.846 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.992 -13.043 2.391 14.551 hybrid contribution 0.807 -3.030 1.028 3.300 sum 6.799 -16.074 3.418 17.784 Atomic orbital electron populations 1.70578 1.06732 1.32634 1.43298 1.25662 0.96625 1.01910 0.93397 0.83609 0.74834 0.75660 0.76347 1.21031 1.21818 1.21641 1.21747 0.94030 0.90034 1.57478 0.92832 1.17928 0.86105 0.89472 0.89363 0.93791 1.61349 1.39585 1.21379 1.07293 1.22091 0.95040 0.89290 1.00821 1.20861 0.93076 1.00778 0.96375 1.20699 0.93254 0.93955 1.08023 1.22291 0.95278 0.96632 0.95286 1.69612 1.08461 1.13296 1.25465 1.24376 0.97016 0.93447 0.96273 1.45841 1.19358 1.17105 1.33980 1.22197 0.96699 0.83700 0.98948 1.22686 0.98868 0.97254 0.97832 1.20474 0.93111 0.90784 1.02942 0.89897 0.84641 0.91273 0.91746 0.91740 0.92247 0.90109 0.90068 0.89797 0.88556 0.88993 0.89296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.51 55.43 0.75 -26.86 16 2 C 0.03 0.97 5.39 -17.82 -0.10 0.87 16 3 Si 1.07 26.39 29.90 -169.99 -5.08 21.31 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.59 -17.67 8.56 -34.44 -0.29 -17.96 16 8 H 0.05 1.67 7.69 -52.48 -0.40 1.26 16 9 C 0.28 7.54 2.32 -69.72 -0.16 7.38 16 10 H 0.04 1.31 8.03 -51.93 -0.42 0.89 16 11 N -0.67 -15.95 5.16 -108.46 -0.56 -16.51 16 12 C 0.06 1.12 6.56 -3.50 -0.02 1.10 16 13 C -0.07 -1.23 6.42 -27.60 -0.18 -1.40 16 14 C -0.05 -0.99 7.16 -81.75 -0.59 -1.58 16 15 C 0.04 0.96 6.35 -83.00 -0.53 0.44 16 16 N -0.45 -11.14 11.13 -6.68 -0.07 -11.21 16 17 C 0.15 2.91 8.57 -154.34 -1.32 1.59 16 18 N -0.48 -8.55 3.62 -107.66 -0.39 -8.94 16 19 C 0.11 1.23 7.77 -3.00 -0.02 1.21 16 20 C -0.13 -1.14 7.17 -25.23 -0.18 -1.33 16 21 C -0.03 -0.43 6.85 -26.69 -0.18 -0.61 16 22 H 0.29 8.86 6.41 -40.82 -0.26 8.60 16 23 H 0.34 8.13 8.57 -39.29 -0.34 7.79 16 24 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 269.82 15.07 4.07 4.07 Total: -1.00 -35.24 269.82 -9.31 -44.54 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.44 Total: 3.90 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -3.57 Total: -10.30 kcal Atomic # 7 Polarization: -63.25 SS G_CDS: -0.28 Total: -63.52 kcal Atomic # 14 Polarization: 26.39 SS G_CDS: -5.08 Total: 21.31 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -35.24 -9.31 -44.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980812.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.890 kcal (2) G-P(sol) polarization free energy of solvation -35.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds