Wall clock time and date at job start Mon Mar 30 2020 03:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.69598 * 60.57051 * 9 7 2 11 11 N 1.47283 * 109.70180 * 300.00000 * 9 7 2 12 12 C 1.46948 * 111.52928 * 188.85816 * 11 9 7 13 13 C 1.53569 * 109.58899 * 71.25465 * 12 11 9 14 14 C 1.50667 * 107.81158 * 311.20056 * 13 12 11 15 15 C 1.35145 * 123.58507 * 15.65336 * 14 13 12 16 16 N 1.33247 * 107.91108 * 180.18379 * 15 14 13 17 17 C 1.31199 * 109.16425 * 359.95235 * 16 15 14 18 18 N 1.35145 * 108.81882 * 359.91167 * 17 16 15 19 19 C 1.47101 * 110.99001 * 180.25914 * 18 17 16 20 20 C 1.54358 * 105.60170 * 342.76449 * 19 18 17 21 21 C 1.51506 * 141.20931 * 179.78627 * 17 16 15 22 22 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 23 23 H 1.00896 * 110.99866 * 313.20112 * 11 9 7 24 24 H 1.08998 * 109.45238 * 191.28999 * 12 11 9 25 25 H 1.09002 * 109.45242 * 311.24460 * 12 11 9 26 26 H 1.09003 * 109.79217 * 70.77719 * 13 12 11 27 27 H 1.08998 * 109.79586 * 191.62198 * 13 12 11 28 28 H 1.08999 * 110.21864 * 101.79503 * 19 18 17 29 29 H 1.08995 * 110.22219 * 223.73111 * 19 18 17 30 30 H 1.08997 * 110.96669 * 267.74772 * 20 19 18 31 31 H 1.08999 * 110.99972 * 144.00260 * 20 19 18 32 32 H 1.09001 * 110.46734 * 315.38277 * 21 17 16 33 33 H 1.08995 * 110.47276 * 77.99382 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6311 -2.5654 -0.8935 11 7 0.4020 -2.5823 1.2011 12 6 -0.1895 -3.9190 1.3517 13 6 0.9011 -4.9222 1.7549 14 6 2.0678 -4.7350 0.8200 15 6 2.2266 -3.6496 0.0306 16 7 3.3522 -3.8095 -0.6643 17 6 3.9019 -4.9547 -0.3363 18 7 3.1278 -5.5600 0.5915 19 6 3.7051 -6.8501 0.9991 20 6 4.7275 -7.2129 -0.0989 21 6 5.1054 -5.8198 -0.6502 22 1 -0.4850 -0.8401 -0.0004 23 1 0.9177 -2.3198 2.0276 24 1 -0.9594 -3.8905 2.1228 25 1 -0.6344 -4.2278 0.4058 26 1 1.2162 -4.7323 2.7809 27 1 0.5179 -5.9389 1.6679 28 1 4.2058 -6.7512 1.9623 29 1 2.9263 -7.6106 1.0549 30 1 4.2672 -7.8270 -0.8729 31 1 5.5973 -7.7129 0.3270 32 1 5.2701 -5.8677 -1.7267 33 1 5.9920 -5.4374 -0.1445 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259980812.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:39 Heat of formation + Delta-G solvation = 45.733061 kcal Electronic energy + Delta-G solvation = -16581.768856 eV Core-core repulsion = 14028.183830 eV Total energy + Delta-G solvation = -2553.585026 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.49592 -38.91114 -36.57837 -35.00843 -33.04042 -30.88263 -29.82135 -28.06280 -26.69789 -24.26074 -23.57730 -22.05767 -21.02829 -20.33639 -18.93839 -17.55882 -16.86322 -16.44990 -15.70454 -15.54901 -15.23190 -14.95064 -14.79996 -14.18471 -14.08584 -13.79915 -13.62609 -13.14389 -12.86882 -12.58341 -12.50336 -12.49464 -12.07508 -11.87788 -11.86665 -10.92800 -10.56396 -10.44205 -10.31333 -9.25925 -8.92116 -8.36837 -6.21436 1.03399 1.54418 1.63346 1.83124 1.84632 2.19225 2.65198 2.98912 3.26397 3.46416 3.69528 3.74705 3.86850 4.00093 4.04926 4.24420 4.35988 4.46750 4.53959 4.58605 4.70269 4.81203 4.87834 4.93798 4.96648 5.09249 5.19250 5.44697 5.88238 6.02481 6.14420 6.34365 6.54113 6.72985 6.90816 7.35923 7.64926 8.97141 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.032509 B = 0.008306 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.097353 B = 3370.080793 C = 4060.204380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 1.114 2.886 4 H -0.277 1.277 5 H -0.275 1.275 6 H -0.282 1.282 7 C -0.608 4.608 8 H 0.028 0.972 9 C 0.286 3.714 10 H -0.004 1.004 11 N -0.677 5.677 12 C 0.059 3.941 13 C -0.059 4.059 14 C -0.041 4.041 15 C -0.019 4.019 16 N -0.519 5.519 17 C 0.145 3.855 18 N -0.474 5.474 19 C 0.093 3.907 20 C -0.108 4.108 21 C -0.036 4.036 22 H 0.277 0.723 23 H 0.331 0.669 24 H 0.101 0.899 25 H 0.053 0.947 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.141 0.859 32 H 0.101 0.899 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.036 -18.117 4.619 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.215 4.215 3 Si 0.937 3.063 4 H -0.202 1.202 5 H -0.201 1.201 6 H -0.208 1.208 7 C -0.647 4.647 8 H 0.047 0.953 9 C 0.177 3.823 10 H 0.014 0.986 11 N -0.306 5.306 12 C -0.072 4.072 13 C -0.099 4.099 14 C -0.155 4.155 15 C -0.152 4.152 16 N -0.239 5.239 17 C -0.117 4.117 18 N -0.158 5.158 19 C -0.026 4.026 20 C -0.146 4.146 21 C -0.075 4.075 22 H 0.089 0.911 23 H 0.149 0.851 24 H 0.119 0.881 25 H 0.071 0.929 26 H 0.099 0.901 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.159 0.841 32 H 0.119 0.881 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.459 -15.857 3.911 17.955 hybrid contribution 0.398 -2.320 0.529 2.413 sum 7.857 -18.177 4.440 20.294 Atomic orbital electron populations 1.70684 1.07360 1.31967 1.45226 1.27045 0.96781 1.05321 0.92362 0.82990 0.74097 0.72041 0.77213 1.20249 1.20098 1.20827 1.21923 0.93005 0.92147 1.57591 0.95334 1.17399 0.86275 0.89880 0.88730 0.98643 1.61028 1.38855 1.24939 1.05801 1.22188 0.96098 0.87454 1.01438 1.20830 0.91015 1.01913 0.96127 1.20940 0.94504 0.93187 1.06915 1.21937 0.96406 0.98063 0.98779 1.69409 1.09736 1.16933 1.27795 1.25543 0.98530 0.92240 0.95428 1.46240 1.17880 1.18658 1.32990 1.22803 0.97993 0.81027 1.00808 1.22789 0.99692 0.94979 0.97122 1.20853 0.90850 0.91687 1.04133 0.91117 0.85127 0.88107 0.92881 0.90056 0.88664 0.88059 0.87756 0.88631 0.84089 0.88097 0.87691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.61 13.51 21.45 0.29 -58.32 16 2 C -0.01 -0.74 5.39 84.65 0.46 -0.29 16 3 Si 1.11 54.63 29.90 68.60 2.05 56.68 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 7 C -0.61 -38.32 8.56 25.60 0.22 -38.10 16 8 H 0.03 1.88 7.69 -2.91 -0.02 1.86 16 9 C 0.29 16.48 2.32 43.40 0.10 16.58 16 10 H 0.00 -0.26 8.03 -2.39 -0.02 -0.28 16 11 N -0.68 -33.67 5.16 -497.06 -2.57 -36.23 16 12 C 0.06 2.22 6.56 86.49 0.57 2.78 16 13 C -0.06 -1.92 6.42 30.03 0.19 -1.73 16 14 C -0.04 -1.69 7.16 41.15 0.29 -1.39 16 15 C -0.02 -1.02 6.35 41.68 0.26 -0.75 16 16 N -0.52 -26.82 11.13 -175.06 -1.95 -28.77 16 17 C 0.14 5.55 8.57 138.15 1.18 6.74 16 18 N -0.47 -15.98 3.62 -494.53 -1.79 -17.77 16 19 C 0.09 1.70 7.77 86.73 0.67 2.38 16 20 C -0.11 -1.35 7.17 31.57 0.23 -1.13 16 21 C -0.04 -0.80 6.85 30.62 0.21 -0.59 16 22 H 0.28 17.95 6.41 -92.71 -0.59 17.35 16 23 H 0.33 16.60 8.57 -89.70 -0.77 15.83 16 24 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 25 H 0.05 2.11 8.08 -2.39 -0.02 2.09 16 26 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -84.46 269.82 0.95 -83.51 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.52 Total: 16.40 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 4.39 Total: -15.50 kcal Atomic # 7 Polarization: -135.08 SS G_CDS: -6.01 Total: -141.10 kcal Atomic # 14 Polarization: 54.63 SS G_CDS: 2.05 Total: 56.68 kcal Total: -84.46 0.95 -83.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980812.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.245 kcal (2) G-P(sol) polarization free energy of solvation -84.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds