Wall clock time and date at job start Mon Mar 30 2020 03:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38257 * 120.00146 * 2 1 4 4 C 1.38214 * 120.00275 * 179.97438 * 3 2 1 5 5 C 1.38264 * 119.99700 * 359.75175 * 4 3 2 6 6 C 1.38212 * 120.00062 * 0.50173 * 5 4 3 7 7 C 1.50695 * 120.00242 * 179.76557 * 6 5 4 8 8 H 1.09004 * 109.46734 * 30.66370 * 7 6 5 9 9 C 1.50694 * 109.47435 * 270.66241 * 7 6 5 10 10 H 1.08000 * 120.00345 * 114.78259 * 9 7 6 11 11 C 1.37878 * 119.99992 * 295.06250 * 9 7 6 12 12 N 1.31516 * 120.00081 * 5.78515 * 11 9 7 13 13 Si 1.86802 * 120.00183 * 185.77996 * 11 9 7 14 14 H 1.48503 * 109.46966 * 60.00087 * 13 11 9 15 15 H 1.48493 * 109.47292 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47385 * 300.00439 * 13 11 9 17 17 C 1.52999 * 109.47452 * 150.66055 * 7 6 5 18 18 N 1.46494 * 109.47248 * 185.00560 * 17 7 6 19 19 C 1.34780 * 119.99783 * 180.02562 * 18 17 7 20 20 O 1.21278 * 119.99972 * 0.02562 * 19 18 17 21 21 C 1.38221 * 120.00189 * 179.97438 * 2 1 3 22 22 H 1.09006 * 109.47162 * 270.01909 * 1 2 3 23 23 H 1.08994 * 109.47213 * 30.01841 * 1 2 3 24 24 H 1.09003 * 109.46995 * 150.02521 * 1 2 3 25 25 H 1.07997 * 119.99677 * 0.02562 * 3 2 1 26 26 H 1.07994 * 120.00123 * 180.02562 * 4 3 2 27 27 H 1.08004 * 119.99719 * 180.27297 * 5 4 3 28 28 H 0.96997 * 119.99992 * 179.97438 * 12 11 9 29 29 H 1.09006 * 109.47187 * 305.00402 * 17 7 6 30 30 H 1.09000 * 109.46957 * 64.99750 * 17 7 6 31 31 H 0.96994 * 120.00453 * 359.97438 * 18 17 7 32 32 H 1.08005 * 119.99998 * 179.97438 * 19 18 17 33 33 H 1.08001 * 119.99509 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0063 6 6 3.5806 -1.1970 0.0010 7 6 4.3341 -2.5021 0.0019 8 1 5.2790 -2.3757 0.5304 9 6 4.6058 -2.9263 -1.4184 10 1 5.6213 -2.9750 -1.7826 11 6 3.5574 -3.2468 -2.2547 12 7 2.3177 -3.0739 -1.8511 13 14 3.8980 -3.9265 -3.9610 14 1 4.6648 -5.1930 -3.8454 15 1 2.6117 -4.1877 -4.6555 16 1 4.6882 -2.9387 -4.7387 17 6 3.4970 -3.5738 0.7029 18 7 4.2763 -4.8096 0.8100 19 6 3.7377 -5.8974 1.3959 20 8 2.6077 -5.8531 1.8341 21 6 2.1981 -1.1970 0.0005 22 1 -0.3634 0.0003 1.0277 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6582 2.1326 0.0004 26 1 4.1204 2.1326 0.0010 27 1 5.3517 0.0000 0.0111 28 1 1.5803 -3.2991 -2.4396 29 1 3.2254 -3.2280 1.7004 30 1 2.5922 -3.7636 0.1255 31 1 5.1796 -4.8454 0.4585 32 1 4.3120 -6.8086 1.4745 33 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260189215.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:11 Heat of formation + Delta-G solvation = -21.832558 kcal Electronic energy + Delta-G solvation = -16393.148986 eV Core-core repulsion = 13804.341344 eV Total energy + Delta-G solvation = -2588.807642 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.75795 -38.08427 -35.17642 -32.73276 -31.90604 -30.59832 -27.79056 -26.15507 -25.15233 -22.59349 -21.09870 -20.02741 -19.52524 -17.09032 -16.17497 -15.58683 -15.08963 -14.69647 -14.08314 -13.95807 -13.56143 -13.09654 -12.82147 -12.78443 -11.98874 -11.88761 -11.71633 -11.51649 -11.14376 -11.01300 -10.91254 -10.66109 -10.25869 -9.98600 -9.45581 -9.27944 -9.14676 -8.66012 -7.99338 -7.61047 -7.44823 -6.07112 -4.28340 2.43825 2.58317 3.21870 3.28568 3.29731 3.49519 4.28726 4.31606 4.89497 5.12768 5.68700 5.71043 5.77591 5.96604 6.00481 6.20964 6.32130 6.40719 6.54067 6.58601 6.73150 6.79186 6.91829 7.14304 7.29058 7.38096 7.46613 7.54470 7.72745 7.81856 8.04708 8.10167 8.21968 8.40502 8.71942 9.03008 9.39763 10.83174 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.017621 B = 0.011024 C = 0.008717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.666763 B = 2539.413234 C = 3211.524696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.113 4.113 3 C -0.150 4.150 4 C -0.140 4.140 5 C -0.136 4.136 6 C -0.026 4.026 7 C 0.065 3.935 8 H 0.033 0.967 9 C -0.516 4.516 10 H 0.059 0.941 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.278 1.278 17 C 0.111 3.889 18 N -0.707 5.707 19 C 0.478 3.522 20 O -0.577 6.577 21 C -0.063 4.063 22 H 0.056 0.944 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.265 0.735 29 H 0.028 0.972 30 H 0.108 0.892 31 H 0.397 0.603 32 H 0.111 0.889 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.158 1.990 2.833 4.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.113 4.113 3 C -0.168 4.168 4 C -0.158 4.158 5 C -0.154 4.154 6 C -0.027 4.027 7 C 0.046 3.954 8 H 0.052 0.948 9 C -0.553 4.553 10 H 0.078 0.922 11 C -0.131 4.131 12 N -0.504 5.504 13 Si 0.721 3.279 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.204 1.204 17 C -0.012 4.012 18 N -0.357 5.357 19 C 0.245 3.755 20 O -0.456 6.456 21 C -0.081 4.081 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.126 0.874 31 H 0.231 0.769 32 H 0.127 0.873 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.143 1.993 3.065 3.830 hybrid contribution 0.668 -0.200 -1.466 1.624 sum 1.811 1.793 1.598 3.008 Atomic orbital electron populations 1.20655 0.92727 1.01757 1.00912 1.19874 0.95173 0.93799 1.02432 1.20652 0.94128 0.96555 1.05483 1.20764 0.94159 0.97059 1.03811 1.20836 0.98783 0.92422 1.03352 1.20136 0.93925 0.95083 0.93549 1.18048 0.92873 0.88528 0.95995 0.94835 1.20922 0.93127 1.45573 0.95645 0.92242 1.24941 0.95047 0.94813 0.98256 1.69742 0.98350 1.45816 1.36522 0.86638 0.77588 0.79478 0.84204 1.20235 1.21243 1.20362 1.21748 0.97978 0.83893 0.97582 1.46471 1.18579 1.13252 1.57438 1.22303 0.88165 0.86921 0.78086 1.90645 1.20665 1.85025 1.49299 1.21321 0.94133 0.97403 0.95258 0.92509 0.92988 0.91749 0.88232 0.88043 0.87791 0.92468 0.95377 0.87423 0.76897 0.87329 0.83981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 10.01 36.00 0.36 -1.41 16 2 C -0.11 -2.30 5.88 -104.62 -0.62 -2.91 16 3 C -0.15 -2.87 9.70 -39.58 -0.38 -3.25 16 4 C -0.14 -2.68 10.05 -39.58 -0.40 -3.08 16 5 C -0.14 -2.83 9.70 -39.58 -0.38 -3.22 16 6 C -0.03 -0.59 4.68 -104.63 -0.49 -1.08 16 7 C 0.06 1.45 2.35 -92.93 -0.22 1.23 16 8 H 0.03 0.71 8.09 -51.93 -0.42 0.29 16 9 C -0.52 -12.49 8.22 -34.44 -0.28 -12.77 16 10 H 0.06 1.43 7.82 -52.49 -0.41 1.02 16 11 C 0.07 1.82 5.11 -17.82 -0.09 1.73 16 12 N -0.87 -22.16 7.92 55.43 0.44 -21.72 16 13 Si 0.89 20.03 29.54 -169.99 -5.02 15.00 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 C 0.11 2.48 3.99 -4.05 -0.02 2.46 16 18 N -0.71 -13.41 5.35 -64.68 -0.35 -13.75 16 19 C 0.48 8.75 12.64 54.06 0.68 9.43 16 20 O -0.58 -13.38 17.17 5.56 0.10 -13.28 16 21 C -0.06 -1.42 7.05 -39.58 -0.28 -1.70 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.05 0.78 8.09 -51.93 -0.42 0.36 16 24 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 25 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 26 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 27 H 0.10 2.00 8.06 -52.48 -0.42 1.58 16 28 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.11 2.74 4.77 -51.93 -0.25 2.50 16 31 H 0.40 6.60 8.34 -40.82 -0.34 6.26 16 32 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 33 H 0.14 3.45 5.13 -52.49 -0.27 3.18 16 LS Contribution 277.86 15.07 4.19 4.19 Total: -1.00 -28.58 277.86 -6.96 -35.54 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -4.20 Total: 8.57 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -2.12 Total: -14.55 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.09 Total: -35.47 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.10 Total: -13.28 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.58 -6.96 -35.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260189215.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.709 kcal (2) G-P(sol) polarization free energy of solvation -28.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds