Wall clock time and date at job start Mon Mar 30 2020 03:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38257 * 120.00146 * 2 1 4 4 C 1.38214 * 120.00275 * 179.97438 * 3 2 1 5 5 C 1.38264 * 119.99700 * 359.75175 * 4 3 2 6 6 C 1.38212 * 120.00062 * 0.50173 * 5 4 3 7 7 C 1.50695 * 120.00242 * 179.76557 * 6 5 4 8 8 H 1.09004 * 109.46734 * 30.66370 * 7 6 5 9 9 C 1.50694 * 109.47435 * 270.66241 * 7 6 5 10 10 H 1.08000 * 120.00345 * 114.78259 * 9 7 6 11 11 C 1.37878 * 119.99992 * 295.06250 * 9 7 6 12 12 N 1.31516 * 120.00081 * 5.78515 * 11 9 7 13 13 Si 1.86802 * 120.00183 * 185.77996 * 11 9 7 14 14 H 1.48503 * 109.46966 * 60.00087 * 13 11 9 15 15 H 1.48493 * 109.47292 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47385 * 300.00439 * 13 11 9 17 17 C 1.52999 * 109.47452 * 150.66055 * 7 6 5 18 18 N 1.46494 * 109.47248 * 185.00560 * 17 7 6 19 19 C 1.34780 * 119.99783 * 180.02562 * 18 17 7 20 20 O 1.21278 * 119.99972 * 0.02562 * 19 18 17 21 21 C 1.38221 * 120.00189 * 179.97438 * 2 1 3 22 22 H 1.09006 * 109.47162 * 270.01909 * 1 2 3 23 23 H 1.08994 * 109.47213 * 30.01841 * 1 2 3 24 24 H 1.09003 * 109.46995 * 150.02521 * 1 2 3 25 25 H 1.07997 * 119.99677 * 0.02562 * 3 2 1 26 26 H 1.07994 * 120.00123 * 180.02562 * 4 3 2 27 27 H 1.08004 * 119.99719 * 180.27297 * 5 4 3 28 28 H 0.96997 * 119.99992 * 179.97438 * 12 11 9 29 29 H 1.09006 * 109.47187 * 305.00402 * 17 7 6 30 30 H 1.09000 * 109.46957 * 64.99750 * 17 7 6 31 31 H 0.96994 * 120.00453 * 359.97438 * 18 17 7 32 32 H 1.08005 * 119.99998 * 179.97438 * 19 18 17 33 33 H 1.08001 * 119.99509 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0063 6 6 3.5806 -1.1970 0.0010 7 6 4.3341 -2.5021 0.0019 8 1 5.2790 -2.3757 0.5304 9 6 4.6058 -2.9263 -1.4184 10 1 5.6213 -2.9750 -1.7826 11 6 3.5574 -3.2468 -2.2547 12 7 2.3177 -3.0739 -1.8511 13 14 3.8980 -3.9265 -3.9610 14 1 4.6648 -5.1930 -3.8454 15 1 2.6117 -4.1877 -4.6555 16 1 4.6882 -2.9387 -4.7387 17 6 3.4970 -3.5738 0.7029 18 7 4.2763 -4.8096 0.8100 19 6 3.7377 -5.8974 1.3959 20 8 2.6077 -5.8531 1.8341 21 6 2.1981 -1.1970 0.0005 22 1 -0.3634 0.0003 1.0277 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3633 -0.8902 -0.5135 25 1 1.6582 2.1326 0.0004 26 1 4.1204 2.1326 0.0010 27 1 5.3517 0.0000 0.0111 28 1 1.5803 -3.2991 -2.4396 29 1 3.2254 -3.2280 1.7004 30 1 2.5922 -3.7636 0.1255 31 1 5.1796 -4.8454 0.4585 32 1 4.3120 -6.8086 1.4745 33 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260189215.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:10 Heat of formation + Delta-G solvation = -38.910214 kcal Electronic energy + Delta-G solvation = -16393.889529 eV Core-core repulsion = 13804.341344 eV Total energy + Delta-G solvation = -2589.548185 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37184 -39.66834 -36.87929 -34.43495 -33.50318 -32.25545 -29.47432 -27.67480 -26.91510 -24.27202 -22.64058 -21.66304 -21.14842 -18.70076 -17.89344 -17.22665 -16.83527 -16.34524 -15.74663 -15.56390 -15.12203 -14.74553 -14.40950 -14.28763 -13.55195 -13.51389 -13.48394 -13.02885 -12.84793 -12.71182 -12.61049 -12.39646 -11.86909 -11.65359 -11.16958 -11.03126 -10.79245 -10.49013 -9.68241 -9.21278 -9.07214 -7.92769 -6.20141 0.84717 0.99785 1.43093 1.46045 1.50301 2.00894 2.44130 2.85966 3.19902 3.32630 4.26255 4.28052 4.37307 4.47145 4.58773 4.73943 4.81038 4.85304 4.90446 5.06074 5.10336 5.16148 5.25989 5.59471 5.63871 5.68277 5.79817 5.88024 5.95526 6.14607 6.27150 6.38828 6.57537 6.80075 6.96005 7.48874 7.57262 8.92459 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.017621 B = 0.011024 C = 0.008717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.666763 B = 2539.413234 C = 3211.524696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.125 4.125 3 C -0.151 4.151 4 C -0.137 4.137 5 C -0.151 4.151 6 C -0.052 4.052 7 C 0.066 3.934 8 H 0.042 0.958 9 C -0.520 4.520 10 H 0.060 0.940 11 C 0.035 3.965 12 N -0.882 5.882 13 Si 0.941 3.059 14 H -0.268 1.268 15 H -0.296 1.296 16 H -0.280 1.280 17 C 0.125 3.875 18 N -0.705 5.705 19 C 0.478 3.522 20 O -0.629 6.629 21 C -0.085 4.085 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.133 0.867 26 H 0.136 0.864 27 H 0.116 0.884 28 H 0.257 0.743 29 H 0.013 0.987 30 H 0.076 0.924 31 H 0.411 0.589 32 H 0.179 0.821 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.095 2.803 2.718 4.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.125 4.125 3 C -0.169 4.169 4 C -0.155 4.155 5 C -0.169 4.169 6 C -0.053 4.053 7 C 0.047 3.953 8 H 0.061 0.939 9 C -0.557 4.557 10 H 0.078 0.922 11 C -0.167 4.167 12 N -0.518 5.518 13 Si 0.768 3.232 14 H -0.193 1.193 15 H -0.222 1.222 16 H -0.206 1.206 17 C 0.000 4.000 18 N -0.355 5.355 19 C 0.248 3.752 20 O -0.511 6.511 21 C -0.104 4.104 22 H 0.091 0.909 23 H 0.094 0.906 24 H 0.068 0.932 25 H 0.151 0.849 26 H 0.154 0.846 27 H 0.134 0.866 28 H 0.066 0.934 29 H 0.032 0.968 30 H 0.094 0.906 31 H 0.246 0.754 32 H 0.195 0.805 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.123 2.798 2.946 4.584 hybrid contribution 0.389 -0.414 -1.389 1.501 sum 2.512 2.384 1.557 3.797 Atomic orbital electron populations 1.20665 0.90701 1.02201 1.02112 1.20269 0.96958 0.93603 1.01685 1.21048 0.94452 0.97265 1.04095 1.21176 0.94519 0.97774 1.01992 1.21074 0.99589 0.92545 1.03688 1.20278 0.94220 0.95812 0.94962 1.18030 0.93210 0.88786 0.95289 0.93938 1.21099 0.92914 1.45275 0.96396 0.92211 1.25492 0.95076 0.95440 1.00666 1.69950 0.98601 1.46494 1.36759 0.85892 0.76852 0.79170 0.81292 1.19294 1.22191 1.20607 1.21349 0.97331 0.85303 0.96018 1.46469 1.18944 1.12618 1.57489 1.23458 0.87645 0.88011 0.76109 1.90631 1.23350 1.85822 1.51341 1.21204 0.94423 0.97457 0.97284 0.90876 0.90638 0.93151 0.84933 0.84634 0.86599 0.93364 0.96829 0.90646 0.75351 0.80536 0.86581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.30 10.01 71.23 0.71 -2.59 16 2 C -0.12 -5.01 5.88 -19.87 -0.12 -5.13 16 3 C -0.15 -5.38 9.70 22.27 0.22 -5.17 16 4 C -0.14 -4.89 10.05 22.27 0.22 -4.66 16 5 C -0.15 -6.13 9.70 22.27 0.22 -5.92 16 6 C -0.05 -2.36 4.68 -19.87 -0.09 -2.46 16 7 C 0.07 2.98 2.35 -12.29 -0.03 2.95 16 8 H 0.04 1.79 8.09 -2.39 -0.02 1.77 16 9 C -0.52 -25.11 8.22 25.60 0.21 -24.90 16 10 H 0.06 2.82 7.82 -2.91 -0.02 2.80 16 11 C 0.04 1.75 5.11 84.65 0.43 2.19 16 12 N -0.88 -46.21 7.92 21.45 0.17 -46.04 16 13 Si 0.94 41.04 29.54 68.60 2.03 43.07 16 14 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 15 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 17 C 0.12 5.70 3.99 86.38 0.34 6.04 16 18 N -0.70 -26.30 5.35 -476.93 -2.55 -28.86 16 19 C 0.48 16.85 12.64 129.79 1.64 18.50 16 20 O -0.63 -29.33 17.17 -3.02 -0.05 -29.38 16 21 C -0.09 -3.95 7.05 22.27 0.16 -3.79 16 22 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 23 H 0.07 2.10 8.09 -2.39 -0.02 2.08 16 24 H 0.05 1.78 8.09 -2.39 -0.02 1.76 16 25 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 26 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 27 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 28 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 29 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.08 4.01 4.77 -2.39 -0.01 4.00 16 31 H 0.41 13.07 8.34 -92.71 -0.77 12.29 16 32 H 0.18 3.90 8.06 -2.91 -0.02 3.88 16 33 H 0.12 5.95 5.13 -2.91 -0.01 5.94 16 Total: -1.00 -62.73 277.86 3.85 -58.89 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 0.34 Total: 27.25 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 3.92 Total: -24.93 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -2.38 Total: -74.90 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.05 Total: -29.38 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -62.73 3.85 -58.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260189215.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.980 kcal (2) G-P(sol) polarization free energy of solvation -62.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds