Wall clock time and date at job start Mon Mar 30 2020 03:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38426 * 119.82565 * 2 1 4 4 C 1.37861 * 120.17305 * 180.02562 * 3 2 1 5 5 C 1.39876 * 119.82493 * 359.97438 * 4 3 2 6 6 C 1.47173 * 120.16841 * 179.97438 * 5 4 3 7 7 O 1.21249 * 119.99469 * 180.02562 * 6 5 4 8 8 C 1.39827 * 119.65885 * 0.02562 * 5 4 3 9 9 C 1.50698 * 120.09001 * 180.02562 * 8 5 4 10 10 H 1.08998 * 109.47248 * 39.99544 * 9 8 5 11 11 N 1.46900 * 109.47246 * 159.99670 * 9 8 5 12 12 C 1.53004 * 109.46815 * 279.99681 * 9 8 5 13 13 C 1.50699 * 109.46847 * 174.99923 * 12 9 8 14 14 H 1.08002 * 120.00511 * 0.02562 * 13 12 9 15 15 C 1.37884 * 119.99783 * 179.97438 * 13 12 9 16 16 N 1.31514 * 119.99573 * 180.27665 * 15 13 12 17 17 Si 1.86800 * 119.99781 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46758 * 89.99934 * 17 15 13 19 19 H 1.48499 * 109.47026 * 209.99782 * 17 15 13 20 20 H 1.48496 * 109.47474 * 329.99818 * 17 15 13 21 21 C 1.37908 * 119.82269 * 0.26343 * 8 5 4 22 22 H 1.08997 * 109.47151 * 90.00283 * 1 2 3 23 23 H 1.09006 * 109.47120 * 209.99402 * 1 2 3 24 24 H 1.08995 * 109.47441 * 329.99199 * 1 2 3 25 25 H 1.07999 * 119.91020 * 359.97438 * 3 2 1 26 26 H 1.08007 * 120.08401 * 179.97438 * 4 3 2 27 27 H 1.07998 * 120.00009 * 0.02562 * 6 5 4 28 28 H 1.00889 * 111.00327 * 59.99673 * 11 9 8 29 29 H 1.00904 * 110.99522 * 183.95243 * 11 9 8 30 30 H 1.08992 * 109.47264 * 55.00097 * 12 9 8 31 31 H 1.09005 * 109.46510 * 294.99684 * 12 9 8 32 32 H 0.97004 * 119.99485 * 179.72881 * 16 15 13 33 33 H 1.07999 * 119.91301 * 179.72886 * 21 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2009 0.0000 4 6 3.5741 1.2093 -0.0005 5 6 4.2771 0.0000 -0.0005 6 6 5.7488 0.0001 -0.0017 7 8 6.3550 -1.0500 -0.0021 8 6 3.5744 -1.2089 -0.0005 9 6 4.3220 -2.5173 0.0001 10 1 5.1855 -2.4421 0.6609 11 7 3.4347 -3.5880 0.4737 12 6 4.7929 -2.8362 -1.4204 13 6 5.6441 -4.0796 -1.4000 14 1 5.8303 -4.5915 -0.4674 15 6 6.1845 -4.5643 -2.5723 16 7 6.9229 -5.6525 -2.5553 17 14 5.8608 -3.6801 -4.1856 18 1 6.9165 -2.6605 -4.4117 19 1 5.8744 -4.6621 -5.2996 20 1 4.5344 -3.0150 -4.1282 21 6 2.1953 -1.2005 -0.0060 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3634 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 1.6512 2.1337 -0.0004 26 1 4.1098 2.1471 -0.0010 27 1 6.2887 0.9354 -0.0021 28 1 2.6259 -3.6778 -0.1227 29 1 3.9308 -4.4638 0.5445 30 1 5.3785 -2.0013 -1.8050 31 1 3.9270 -2.9990 -2.0622 32 1 7.2998 -5.9957 -3.3806 33 1 1.6511 -2.1334 -0.0105 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260313087.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:00 Heat of formation + Delta-G solvation = -36.751999 kcal Electronic energy + Delta-G solvation = -16220.214436 eV Core-core repulsion = 13630.759838 eV Total energy + Delta-G solvation = -2589.454598 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.17774 -39.10672 -37.17491 -34.59174 -33.67524 -31.32799 -30.51966 -28.57957 -26.54198 -24.06103 -23.45538 -21.96113 -20.85641 -19.08051 -17.94733 -17.16665 -16.59813 -16.14634 -15.75163 -15.34463 -15.31987 -15.06314 -14.83492 -14.51102 -14.38857 -14.07772 -13.68629 -13.11431 -12.93170 -12.86080 -12.54714 -12.35419 -12.23351 -11.88542 -11.73885 -11.33990 -10.82677 -10.30585 -9.77214 -9.62385 -9.34579 -8.33534 -6.34977 -0.17609 0.54236 1.25228 1.26327 1.37907 1.65130 2.28824 2.91334 3.00786 3.46009 3.71176 3.90283 4.04667 4.08844 4.37227 4.49321 4.61700 4.71691 4.78987 4.81741 4.87428 4.93450 5.10860 5.14588 5.29367 5.32494 5.41278 5.58981 5.68157 5.76051 6.09297 6.19346 6.32800 6.60632 6.68951 6.75453 7.27523 8.83165 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.027598 B = 0.008075 C = 0.007612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.339514 B = 3466.857254 C = 3677.636674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.057 4.057 3 C -0.147 4.147 4 C -0.053 4.053 5 C -0.224 4.224 6 C 0.360 3.640 7 O -0.484 6.484 8 C -0.029 4.029 9 C 0.133 3.867 10 H 0.079 0.921 11 N -0.833 5.833 12 C -0.009 4.009 13 C -0.512 4.512 14 H 0.035 0.965 15 C 0.007 3.993 16 N -0.947 5.947 17 Si 0.945 3.055 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.255 1.255 21 C -0.145 4.145 22 H 0.081 0.919 23 H 0.068 0.932 24 H 0.090 0.910 25 H 0.161 0.839 26 H 0.171 0.829 27 H 0.151 0.849 28 H 0.334 0.666 29 H 0.341 0.659 30 H 0.009 0.991 31 H 0.005 0.995 32 H 0.265 0.735 33 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.850 18.350 3.701 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.057 4.057 3 C -0.164 4.164 4 C -0.071 4.071 5 C -0.226 4.226 6 C 0.222 3.778 7 O -0.359 6.359 8 C -0.030 4.030 9 C 0.022 3.978 10 H 0.097 0.903 11 N -0.362 5.362 12 C -0.048 4.048 13 C -0.550 4.550 14 H 0.053 0.947 15 C -0.190 4.190 16 N -0.588 5.588 17 Si 0.769 3.231 18 H -0.198 1.198 19 H -0.203 1.203 20 H -0.179 1.179 21 C -0.163 4.163 22 H 0.100 0.900 23 H 0.087 0.913 24 H 0.108 0.892 25 H 0.179 0.821 26 H 0.188 0.812 27 H 0.167 0.833 28 H 0.146 0.854 29 H 0.154 0.846 30 H 0.027 0.973 31 H 0.023 0.977 32 H 0.074 0.926 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.507 18.104 4.271 22.415 hybrid contribution 0.667 -0.959 -1.642 2.015 sum -11.839 17.145 2.628 21.001 Atomic orbital electron populations 1.20916 0.88835 1.04064 1.03363 1.20563 0.97875 0.92628 0.94635 1.21379 0.94127 0.98389 1.02528 1.21693 0.94692 0.96877 0.93869 1.21063 0.97061 0.94284 1.10164 1.24847 0.88828 0.94242 0.69930 1.90685 1.71913 1.38044 1.35213 1.20413 0.94680 0.94161 0.93709 1.20324 0.93675 0.88340 0.95445 0.90322 1.59354 1.11073 1.10002 1.55731 1.19947 0.94902 0.95183 0.94762 1.21254 1.30176 1.09484 0.94108 0.94678 1.25895 0.94549 0.95580 1.02975 1.70057 1.35949 1.23984 1.28853 0.85741 0.79643 0.78644 0.79043 1.19800 1.20320 1.17903 1.20993 0.92993 0.99035 1.03299 0.89998 0.91281 0.89158 0.82109 0.81198 0.83348 0.85389 0.84602 0.97319 0.97656 0.92571 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 10.00 71.24 0.71 -1.07 16 2 C -0.06 -1.29 5.89 -19.78 -0.12 -1.41 16 3 C -0.15 -2.76 9.68 22.22 0.22 -2.54 16 4 C -0.05 -1.09 9.80 22.58 0.22 -0.87 16 5 C -0.22 -6.79 5.87 -20.15 -0.12 -6.91 16 6 C 0.36 11.19 11.17 70.17 0.78 11.97 16 7 O -0.48 -21.21 12.57 -2.93 -0.04 -21.25 16 8 C -0.03 -1.04 5.12 -19.56 -0.10 -1.14 16 9 C 0.13 5.94 2.25 44.17 0.10 6.04 16 10 H 0.08 3.98 5.94 -2.39 -0.01 3.97 16 11 N -0.83 -33.99 8.68 -171.80 -1.49 -35.48 16 12 C -0.01 -0.46 3.10 29.85 0.09 -0.37 16 13 C -0.51 -31.09 9.10 25.60 0.23 -30.86 16 14 H 0.03 2.33 7.39 -2.91 -0.02 2.31 16 15 C 0.01 0.41 5.47 84.66 0.46 0.87 16 16 N -0.95 -61.64 13.96 21.45 0.30 -61.34 16 17 Si 0.95 47.31 27.47 68.60 1.88 49.19 16 18 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.26 -12.09 6.54 99.48 0.65 -11.44 16 21 C -0.14 -4.43 8.89 22.23 0.20 -4.23 16 22 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.07 1.08 8.08 -2.38 -0.02 1.06 16 24 H 0.09 0.97 8.08 -2.39 -0.02 0.96 16 25 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 26 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 27 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 28 H 0.33 12.36 7.29 -89.70 -0.65 11.71 16 29 H 0.34 15.12 7.90 -89.69 -0.71 14.41 16 30 H 0.01 0.45 6.09 -2.39 -0.01 0.44 16 31 H 0.01 0.27 7.20 -2.38 -0.02 0.25 16 32 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 33 H 0.13 3.75 6.24 -2.91 -0.02 3.73 16 Total: -1.00 -77.42 274.61 3.06 -74.37 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -0.28 Total: 25.03 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 2.68 Total: -30.52 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -1.19 Total: -96.82 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.04 Total: -21.25 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.88 Total: 49.19 kcal Total: -77.42 3.06 -74.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260313087.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.614 kcal (2) G-P(sol) polarization free energy of solvation -77.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds