Wall clock time and date at job start Mon Mar 30 2020 03:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35890 * 117.00224 * 2 1 4 4 C 1.38736 * 120.05456 * 179.97438 * 3 2 1 5 5 C 1.38150 * 119.94313 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05357 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.93888 * 179.97438 * 6 5 4 8 8 C 1.50708 * 112.95819 * 280.54600 * 7 6 5 9 9 H 1.07997 * 119.99274 * 107.10102 * 8 7 6 10 10 C 1.37874 * 120.00223 * 287.10884 * 8 7 6 11 11 N 1.31517 * 120.00019 * 359.22345 * 10 8 7 12 12 Si 1.86801 * 119.99932 * 179.23279 * 10 8 7 13 13 H 1.48502 * 109.46854 * 179.97438 * 12 10 8 14 14 H 1.48496 * 109.47233 * 59.99770 * 12 10 8 15 15 H 1.48497 * 109.46959 * 299.99568 * 12 10 8 16 16 C 1.53942 * 113.75800 * 148.90754 * 7 6 5 17 17 C 1.53944 * 86.33807 * 221.84829 * 16 7 6 18 18 N 1.47956 * 113.86264 * 52.29392 * 7 6 5 19 19 C 1.38261 * 120.11402 * 0.24869 * 6 5 4 20 20 C 1.38147 * 120.05741 * 359.45335 * 19 6 5 21 21 H 1.08997 * 109.46558 * 60.00259 * 1 2 3 22 22 H 1.08991 * 109.47298 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47052 * 300.00249 * 1 2 3 24 24 H 1.07996 * 120.02911 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.96729 * 180.02562 * 5 4 3 26 26 H 0.96997 * 119.99767 * 354.52895 * 11 10 8 27 27 H 1.08997 * 113.72878 * 336.20421 * 16 7 6 28 28 H 1.08991 * 113.73618 * 107.38535 * 16 7 6 29 29 H 1.08998 * 113.75826 * 138.03371 * 17 16 7 30 30 H 1.08997 * 113.75865 * 269.40355 * 17 16 7 31 31 H 1.00901 * 111.00035 * 251.91088 * 18 7 6 32 32 H 1.07998 * 119.97500 * 179.70359 * 19 6 5 33 33 H 1.07990 * 120.03215 * 180.29619 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2846 0.0005 5 6 4.0563 2.5168 0.0011 6 6 3.3021 3.6756 0.0016 7 6 3.9864 5.0183 0.0028 8 6 4.4791 5.4258 1.3675 9 1 5.5363 5.4074 1.5875 10 6 3.5803 5.8218 2.3351 11 7 2.2942 5.8586 2.0624 12 14 4.1893 6.3063 4.0333 13 1 3.0333 6.6900 4.8828 14 1 5.1201 7.4573 3.9156 15 1 4.8985 5.1573 4.6512 16 6 3.1933 6.1192 -0.7244 17 6 4.5431 6.5629 -1.3167 18 7 4.9959 5.1765 -1.0673 19 6 1.9213 3.6047 0.0068 20 6 1.2916 2.3751 0.0001 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 4.0209 0.3797 0.0005 25 1 5.1347 2.5747 0.0011 26 1 1.9847 5.6843 1.1598 27 1 2.4926 5.7374 -1.4669 28 1 2.7444 6.8520 -0.0540 29 1 4.4939 6.8254 -2.3735 30 1 5.0624 7.3093 -0.7156 31 1 5.9305 5.1643 -0.6873 32 1 1.3344 4.5113 0.0120 33 1 0.2131 2.3202 -0.0007 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260543075.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:27 Heat of formation + Delta-G solvation = -1.285564 kcal Electronic energy + Delta-G solvation = -16499.902021 eV Core-core repulsion = 13911.985363 eV Total energy + Delta-G solvation = -2587.916658 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.30819 -40.21941 -37.78946 -34.60344 -31.99094 -31.24703 -28.43256 -28.29554 -27.26601 -25.03543 -23.40461 -22.44711 -20.57455 -19.17675 -18.99947 -17.11037 -16.86635 -16.57537 -16.38947 -15.75106 -15.40369 -15.08049 -14.55416 -14.35613 -14.17717 -13.70372 -13.40098 -12.88398 -12.72584 -12.64599 -12.34733 -11.99862 -11.97320 -11.86043 -11.54386 -11.50834 -10.92527 -10.47469 -9.83093 -9.64897 -8.88432 -8.44098 -6.35250 0.51070 0.66494 1.53322 1.58845 1.77705 2.44160 2.55220 2.95829 3.18492 3.50240 3.89789 4.01076 4.09527 4.16833 4.38976 4.39654 4.43256 4.60589 4.64617 4.73051 4.73269 4.85149 4.93601 5.04258 5.11114 5.24963 5.37969 5.42051 5.61525 5.90175 5.95642 5.97808 6.18669 6.53975 6.58585 6.72233 7.46825 8.83901 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.024196 B = 0.009253 C = 0.007848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.918849 B = 3025.279544 C = 3567.032805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.333 6.333 3 C 0.098 3.902 4 C -0.160 4.160 5 C -0.082 4.082 6 C -0.072 4.072 7 C 0.213 3.787 8 C -0.614 4.614 9 H 0.050 0.950 10 C -0.007 4.007 11 N -0.926 5.926 12 Si 1.103 2.897 13 H -0.285 1.285 14 H -0.271 1.271 15 H -0.279 1.279 16 C -0.149 4.149 17 C 0.026 3.974 18 N -0.636 5.636 19 C -0.091 4.091 20 C -0.207 4.207 21 H 0.061 0.939 22 H 0.126 0.874 23 H 0.054 0.946 24 H 0.142 0.858 25 H 0.121 0.879 26 H 0.279 0.721 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.309 0.691 32 H 0.108 0.892 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.837 -6.083 -3.897 7.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.053 3.947 4 C -0.179 4.179 5 C -0.100 4.100 6 C -0.074 4.074 7 C 0.122 3.878 8 C -0.653 4.653 9 H 0.068 0.932 10 C -0.210 4.210 11 N -0.563 5.563 12 Si 0.927 3.073 13 H -0.211 1.211 14 H -0.196 1.196 15 H -0.205 1.205 16 C -0.188 4.188 17 C -0.105 4.105 18 N -0.260 5.260 19 C -0.110 4.110 20 C -0.226 4.226 21 H 0.079 0.921 22 H 0.144 0.856 23 H 0.072 0.928 24 H 0.160 0.840 25 H 0.139 0.861 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.527 -6.291 -3.098 7.454 hybrid contribution 0.516 0.459 -0.582 0.903 sum -2.011 -5.832 -3.680 7.184 Atomic orbital electron populations 1.23291 0.76929 1.05469 1.01775 1.85981 1.23108 1.26309 1.89322 1.18934 0.92390 0.84306 0.99034 1.20525 0.91797 0.98380 1.07152 1.20716 0.99706 0.91129 0.98442 1.20125 0.93392 0.96203 0.97657 1.19079 0.90122 0.88608 0.89989 1.22164 0.94917 1.49625 0.98557 0.93186 1.26815 0.93892 0.93363 1.06968 1.70846 1.14922 1.45974 1.24518 0.83095 0.75250 0.77025 0.71948 1.21103 1.19646 1.20484 1.23477 0.96876 0.99807 0.98625 1.23282 0.95390 0.91481 1.00314 1.66963 1.05939 1.19519 1.33590 1.20804 0.94342 0.97023 0.98847 1.21286 1.00490 0.91811 1.09019 0.92075 0.85603 0.92760 0.84031 0.86136 0.90765 0.91587 0.93225 0.89014 0.92420 0.87852 0.87446 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.33 -10.66 10.50 -92.31 -0.97 -11.62 16 3 C 0.10 3.68 6.69 22.51 0.15 3.84 16 4 C -0.16 -6.17 9.99 22.37 0.22 -5.94 16 5 C -0.08 -3.52 9.59 22.26 0.21 -3.31 16 6 C -0.07 -3.42 4.87 -19.85 -0.10 -3.51 16 7 C 0.21 10.29 0.74 2.14 0.00 10.29 16 8 C -0.61 -32.63 8.10 25.60 0.21 -32.43 16 9 H 0.05 2.65 7.76 -2.91 -0.02 2.63 16 10 C -0.01 -0.40 5.23 84.65 0.44 0.04 16 11 N -0.93 -52.62 12.94 21.45 0.28 -52.34 16 12 Si 1.10 48.74 29.90 68.60 2.05 50.79 16 13 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 14 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 15 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 16 C -0.15 -6.83 5.46 31.25 0.17 -6.66 16 17 C 0.03 1.02 8.63 86.41 0.75 1.77 16 18 N -0.64 -27.32 8.13 -488.93 -3.98 -31.30 16 19 C -0.09 -4.12 8.11 22.25 0.18 -3.94 16 20 C -0.21 -8.05 9.04 22.37 0.20 -7.84 16 21 H 0.06 1.25 7.66 -2.39 -0.02 1.23 16 22 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.05 1.20 7.66 -2.39 -0.02 1.19 16 24 H 0.14 4.65 8.06 -2.91 -0.02 4.63 16 25 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 26 H 0.28 15.40 2.92 -92.71 -0.27 15.13 16 27 H 0.07 2.89 7.54 -2.39 -0.02 2.87 16 28 H 0.05 2.48 6.51 -2.39 -0.02 2.46 16 29 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.31 12.85 8.53 -89.69 -0.77 12.09 16 32 H 0.11 5.04 5.67 -2.91 -0.02 5.02 16 33 H 0.14 4.59 6.30 -2.92 -0.02 4.57 16 Total: -1.00 -61.87 270.14 1.79 -60.09 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: 0.85 Total: 30.53 kcal Atomic # 6 Polarization: -49.70 SS G_CDS: 3.55 Total: -46.14 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -3.70 Total: -83.64 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -0.97 Total: -11.62 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 2.05 Total: 50.79 kcal Total: -61.87 1.79 -60.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260543075.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.800 kcal (2) G-P(sol) polarization free energy of solvation -61.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds