Wall clock time and date at job start Mon Mar 30 2020 03:50:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.35901 * 116.99709 * 2 1
4 4 C 1.38758 * 120.14844 * 0.02562 * 3 2 1
5 5 C 1.37914 * 119.81484 * 180.02562 * 4 3 2
6 6 C 1.38787 * 120.45666 * 359.97438 * 5 4 3
7 7 C 1.37877 * 119.80561 * 359.84867 * 6 5 4
8 8 C 1.38529 * 120.14596 * 179.97438 * 3 2 1
9 9 C 1.50729 * 121.65659 * 180.48432 * 7 6 5
10 10 H 1.08998 * 109.39167 * 103.13618 * 9 7 6
11 11 C 1.50706 * 109.39322 * 222.83642 * 9 7 6
12 12 H 1.08000 * 119.99456 * 0.49219 * 11 9 7
13 13 C 1.37874 * 120.00077 * 180.49186 * 11 9 7
14 14 N 1.31512 * 119.99980 * 359.97438 * 13 11 9
15 15 Si 1.86799 * 119.99757 * 180.02562 * 13 11 9
16 16 H 1.48497 * 109.47197 * 359.97438 * 15 13 11
17 17 H 1.48501 * 109.47082 * 119.99824 * 15 13 11
18 18 H 1.48504 * 109.46706 * 239.99785 * 15 13 11
19 19 C 1.52891 * 109.95272 * 342.98646 * 9 7 6
20 20 N 1.47166 * 108.48975 * 50.45920 * 19 9 7
21 21 C 1.46613 * 110.26361 * 288.72458 * 20 19 9
22 22 H 1.09004 * 109.46950 * 179.97438 * 1 2 3
23 23 H 1.08995 * 109.47645 * 300.00261 * 1 2 3
24 24 H 1.08996 * 109.46911 * 60.00483 * 1 2 3
25 25 H 1.07999 * 120.09499 * 0.04329 * 4 3 2
26 26 H 1.07997 * 119.77304 * 179.97438 * 5 4 3
27 27 H 1.07998 * 119.84666 * 0.02562 * 8 3 2
28 28 H 0.97003 * 119.99606 * 180.02562 * 14 13 11
29 29 H 1.09005 * 109.63241 * 290.75834 * 19 9 7
30 30 H 1.08995 * 109.63278 * 170.16140 * 19 9 7
31 31 H 1.00897 * 110.99636 * 52.16142 * 20 19 9
32 32 H 1.09005 * 109.27044 * 172.77140 * 21 20 19
33 33 H 1.09001 * 109.27012 * 292.24409 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0459 1.2109 0.0000
4 6 1.2931 2.3766 0.0005
5 6 1.9263 3.6017 0.0000
6 6 3.3121 3.6774 -0.0005
7 6 4.0617 2.5202 0.0026
8 6 3.4291 1.2870 0.0005
9 6 5.5686 2.5537 0.0130
10 1 5.9287 2.3265 1.0164
11 6 6.0987 1.5244 -0.9517
12 1 5.4130 0.9141 -1.5207
13 6 7.4589 1.3618 -1.1077
14 7 8.2937 2.1053 -0.4150
15 14 8.1159 0.0863 -2.3039
16 1 6.9794 -0.6133 -2.9551
17 1 8.9428 0.7578 -3.3386
18 1 8.9478 -0.8998 -1.5685
19 6 6.0625 3.9400 -0.4017
20 7 5.3583 4.9477 0.4073
21 6 3.9546 5.0400 -0.0057
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3634 0.5138 0.8899
24 1 -0.3633 0.5137 -0.8900
25 1 0.2144 2.3246 0.0017
26 1 1.3398 4.5085 0.0000
27 1 4.0172 0.3812 0.0005
28 1 9.2507 1.9911 -0.5251
29 1 5.8490 4.1039 -1.4580
30 1 7.1356 4.0141 -0.2262
31 1 5.4328 4.7376 1.3914
32 1 3.4190 5.6927 0.6837
33 1 3.9021 5.4586 -1.0108
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260648800.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:50:19
Heat of formation + Delta-G solvation = -36.213722 kcal
Electronic energy + Delta-G solvation = -16339.834026 eV
Core-core repulsion = 13750.402769 eV
Total energy + Delta-G solvation = -2589.431256 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 233.116 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.30839 -39.57532 -36.65629 -35.23074 -33.00321 -30.90034 -30.17636 -27.95493
-26.89058 -24.55954 -23.73692 -22.79675 -20.80030 -18.62405 -18.45237 -17.21686
-16.69416 -16.61984 -16.56536 -16.02386 -15.23881 -14.90578 -14.64854 -14.33468
-14.12255 -13.61339 -13.10078 -13.03929 -12.93402 -12.73950 -12.63262 -12.43080
-12.12691 -11.95506 -11.61103 -11.40144 -11.19454 -10.57140 -9.58347 -9.22908
-8.89424 -8.16107 -6.26802 0.52798 0.54279 1.37076 1.39404 1.50810
2.39347 2.44935 2.87561 3.12354 3.65354 3.95322 4.05312 4.17425
4.34230 4.41810 4.47098 4.52451 4.55326 4.70316 4.78610 4.83049
4.93725 5.02270 5.24185 5.42411 5.47724 5.48595 5.66495 5.68892
5.85471 6.00941 6.20830 6.37264 6.57324 6.59789 6.81728 7.39446
8.89839
Molecular weight = 233.12amu
Principal moments of inertia in cm(-1)
A = 0.022253 B = 0.009514 C = 0.006932
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1257.944150 B = 2942.354404 C = 4038.442768
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 O -0.345 6.345
3 C 0.110 3.890
4 C -0.215 4.215
5 C -0.073 4.073
6 C -0.178 4.178
7 C -0.028 4.028
8 C -0.169 4.169
9 C 0.047 3.953
10 H 0.010 0.990
11 C -0.525 4.525
12 H 0.048 0.952
13 C 0.018 3.982
14 N -0.912 5.912
15 Si 0.954 3.046
16 H -0.274 1.274
17 H -0.276 1.276
18 H -0.278 1.278
19 C 0.083 3.917
20 N -0.687 5.687
21 C 0.105 3.895
22 H 0.117 0.883
23 H 0.067 0.933
24 H 0.064 0.936
25 H 0.158 0.842
26 H 0.159 0.841
27 H 0.102 0.898
28 H 0.264 0.736
29 H 0.037 0.963
30 H 0.076 0.924
31 H 0.336 0.664
32 H 0.106 0.894
33 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.861 2.015 1.247 15.049
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 O -0.259 6.259
3 C 0.065 3.935
4 C -0.233 4.233
5 C -0.091 4.091
6 C -0.180 4.180
7 C -0.028 4.028
8 C -0.188 4.188
9 C 0.027 3.973
10 H 0.028 0.972
11 C -0.564 4.564
12 H 0.067 0.933
13 C -0.181 4.181
14 N -0.551 5.551
15 Si 0.779 3.221
16 H -0.198 1.198
17 H -0.201 1.201
18 H -0.204 1.204
19 C -0.047 4.047
20 N -0.313 5.313
21 C -0.025 4.025
22 H 0.135 0.865
23 H 0.086 0.914
24 H 0.083 0.917
25 H 0.175 0.825
26 H 0.177 0.823
27 H 0.120 0.880
28 H 0.073 0.927
29 H 0.056 0.944
30 H 0.095 0.905
31 H 0.153 0.847
32 H 0.124 0.876
33 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -14.369 2.420 0.881 14.598
hybrid contribution 0.343 -1.834 -0.234 1.881
sum -14.026 0.586 0.646 14.053
Atomic orbital electron populations
1.23333 0.76399 1.05404 1.02343 1.86039 1.23672 1.27158 1.89045
1.19073 0.91723 0.85233 0.97456 1.21361 1.00839 0.91411 1.09728
1.21175 0.92899 0.98270 0.96756 1.20752 0.94883 0.96524 1.05810
1.19992 0.96737 0.92021 0.94091 1.20429 0.91927 0.98395 1.08089
1.18286 0.87149 0.95985 0.95834 0.97239 1.21362 0.91808 1.19462
1.23748 0.93340 1.25677 0.97166 0.97845 0.97416 1.69988 1.02869
1.40416 1.41841 0.85566 0.78203 0.79207 0.79093 1.19832 1.20104
1.20403 1.21856 0.99152 0.88568 0.95101 1.61152 1.12129 1.49635
1.08384 1.20945 0.87797 0.91575 1.02164 0.86499 0.91415 0.91689
0.82480 0.82341 0.87965 0.92654 0.94404 0.90526 0.84744 0.87586
0.90436
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.38 9.82 113.37 1.11 1.50 16
2 O -0.34 -11.42 10.50 -92.43 -0.97 -12.39 16
3 C 0.11 4.04 6.68 22.46 0.15 4.19 16
4 C -0.22 -6.29 9.04 22.32 0.20 -6.09 16
5 C -0.07 -2.13 9.64 22.32 0.22 -1.91 16
6 C -0.18 -6.55 5.80 -19.84 -0.11 -6.66 16
7 C -0.03 -1.27 5.44 -19.85 -0.11 -1.38 16
8 C -0.17 -7.60 8.68 22.43 0.19 -7.41 16
9 C 0.05 2.44 2.26 -12.31 -0.03 2.41 16
10 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16
11 C -0.53 -29.74 7.78 25.60 0.20 -29.54 16
12 H 0.05 2.80 6.78 -2.91 -0.02 2.78 16
13 C 0.02 1.03 5.30 84.65 0.45 1.48 16
14 N -0.91 -52.43 11.44 21.45 0.25 -52.19 16
15 Si 0.95 44.57 29.54 68.60 2.03 46.60 16
16 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16
17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16
18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16
19 C 0.08 4.02 5.52 86.22 0.48 4.50 16
20 N -0.69 -27.03 6.96 -518.27 -3.61 -30.63 16
21 C 0.10 3.46 6.34 85.59 0.54 4.00 16
22 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16
23 H 0.07 1.12 7.67 -2.39 -0.02 1.10 16
24 H 0.06 1.12 7.67 -2.39 -0.02 1.10 16
25 H 0.16 3.28 6.32 -2.91 -0.02 3.27 16
26 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16
27 H 0.10 5.06 7.14 -2.91 -0.02 5.04 16
28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16
29 H 0.04 1.91 8.02 -2.38 -0.02 1.89 16
30 H 0.08 4.16 6.40 -2.39 -0.02 4.14 16
31 H 0.34 12.81 8.74 -89.70 -0.78 12.03 16
32 H 0.11 2.72 8.13 -2.38 -0.02 2.70 16
33 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16
Total: -1.00 -64.97 269.71 1.32 -63.65
By element:
Atomic # 1 Polarization: 19.55 SS G_CDS: 0.34 Total: 19.88 kcal
Atomic # 6 Polarization: -38.21 SS G_CDS: 3.29 Total: -34.92 kcal
Atomic # 7 Polarization: -79.46 SS G_CDS: -3.36 Total: -82.82 kcal
Atomic # 8 Polarization: -11.42 SS G_CDS: -0.97 Total: -12.39 kcal
Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal
Total: -64.97 1.32 -63.65 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260648800.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.435 kcal
(2) G-P(sol) polarization free energy of solvation -64.967 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.533 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.648 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.214 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds