Wall clock time and date at job start Mon Mar 30 2020 03:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35901 * 116.99709 * 2 1 4 4 C 1.38758 * 120.14844 * 0.02562 * 3 2 1 5 5 C 1.37914 * 119.81484 * 180.02562 * 4 3 2 6 6 C 1.38787 * 120.45666 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.80561 * 359.84867 * 6 5 4 8 8 C 1.38529 * 120.14596 * 179.97438 * 3 2 1 9 9 C 1.50729 * 121.65659 * 180.48432 * 7 6 5 10 10 H 1.08998 * 109.39167 * 103.13618 * 9 7 6 11 11 C 1.50706 * 109.39322 * 222.83642 * 9 7 6 12 12 H 1.08000 * 119.99456 * 0.49219 * 11 9 7 13 13 C 1.37874 * 120.00077 * 180.49186 * 11 9 7 14 14 N 1.31512 * 119.99980 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99757 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47197 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47082 * 119.99824 * 15 13 11 18 18 H 1.48504 * 109.46706 * 239.99785 * 15 13 11 19 19 C 1.52891 * 109.95272 * 342.98646 * 9 7 6 20 20 N 1.47166 * 108.48975 * 50.45920 * 19 9 7 21 21 C 1.46613 * 110.26361 * 288.72458 * 20 19 9 22 22 H 1.09004 * 109.46950 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47645 * 300.00261 * 1 2 3 24 24 H 1.08996 * 109.46911 * 60.00483 * 1 2 3 25 25 H 1.07999 * 120.09499 * 0.04329 * 4 3 2 26 26 H 1.07997 * 119.77304 * 179.97438 * 5 4 3 27 27 H 1.07998 * 119.84666 * 0.02562 * 8 3 2 28 28 H 0.97003 * 119.99606 * 180.02562 * 14 13 11 29 29 H 1.09005 * 109.63241 * 290.75834 * 19 9 7 30 30 H 1.08995 * 109.63278 * 170.16140 * 19 9 7 31 31 H 1.00897 * 110.99636 * 52.16142 * 20 19 9 32 32 H 1.09005 * 109.27044 * 172.77140 * 21 20 19 33 33 H 1.09001 * 109.27012 * 292.24409 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2931 2.3766 0.0005 5 6 1.9263 3.6017 0.0000 6 6 3.3121 3.6774 -0.0005 7 6 4.0617 2.5202 0.0026 8 6 3.4291 1.2870 0.0005 9 6 5.5686 2.5537 0.0130 10 1 5.9287 2.3265 1.0164 11 6 6.0987 1.5244 -0.9517 12 1 5.4130 0.9141 -1.5207 13 6 7.4589 1.3618 -1.1077 14 7 8.2937 2.1053 -0.4150 15 14 8.1159 0.0863 -2.3039 16 1 6.9794 -0.6133 -2.9551 17 1 8.9428 0.7578 -3.3386 18 1 8.9478 -0.8998 -1.5685 19 6 6.0625 3.9400 -0.4017 20 7 5.3583 4.9477 0.4073 21 6 3.9546 5.0400 -0.0057 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 0.2144 2.3246 0.0017 26 1 1.3398 4.5085 0.0000 27 1 4.0172 0.3812 0.0005 28 1 9.2507 1.9911 -0.5251 29 1 5.8490 4.1039 -1.4580 30 1 7.1356 4.0141 -0.2262 31 1 5.4328 4.7376 1.3914 32 1 3.4190 5.6927 0.6837 33 1 3.9021 5.4586 -1.0108 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260648800.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:19 Heat of formation + Delta-G solvation = -36.213722 kcal Electronic energy + Delta-G solvation = -16339.834026 eV Core-core repulsion = 13750.402769 eV Total energy + Delta-G solvation = -2589.431256 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.30839 -39.57532 -36.65629 -35.23074 -33.00321 -30.90034 -30.17636 -27.95493 -26.89058 -24.55954 -23.73692 -22.79675 -20.80030 -18.62405 -18.45237 -17.21686 -16.69416 -16.61984 -16.56536 -16.02386 -15.23881 -14.90578 -14.64854 -14.33468 -14.12255 -13.61339 -13.10078 -13.03929 -12.93402 -12.73950 -12.63262 -12.43080 -12.12691 -11.95506 -11.61103 -11.40144 -11.19454 -10.57140 -9.58347 -9.22908 -8.89424 -8.16107 -6.26802 0.52798 0.54279 1.37076 1.39404 1.50810 2.39347 2.44935 2.87561 3.12354 3.65354 3.95322 4.05312 4.17425 4.34230 4.41810 4.47098 4.52451 4.55326 4.70316 4.78610 4.83049 4.93725 5.02270 5.24185 5.42411 5.47724 5.48595 5.66495 5.68892 5.85471 6.00941 6.20830 6.37264 6.57324 6.59789 6.81728 7.39446 8.89839 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.022253 B = 0.009514 C = 0.006932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.944150 B = 2942.354404 C = 4038.442768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.345 6.345 3 C 0.110 3.890 4 C -0.215 4.215 5 C -0.073 4.073 6 C -0.178 4.178 7 C -0.028 4.028 8 C -0.169 4.169 9 C 0.047 3.953 10 H 0.010 0.990 11 C -0.525 4.525 12 H 0.048 0.952 13 C 0.018 3.982 14 N -0.912 5.912 15 Si 0.954 3.046 16 H -0.274 1.274 17 H -0.276 1.276 18 H -0.278 1.278 19 C 0.083 3.917 20 N -0.687 5.687 21 C 0.105 3.895 22 H 0.117 0.883 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.158 0.842 26 H 0.159 0.841 27 H 0.102 0.898 28 H 0.264 0.736 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.336 0.664 32 H 0.106 0.894 33 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.861 2.015 1.247 15.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.259 6.259 3 C 0.065 3.935 4 C -0.233 4.233 5 C -0.091 4.091 6 C -0.180 4.180 7 C -0.028 4.028 8 C -0.188 4.188 9 C 0.027 3.973 10 H 0.028 0.972 11 C -0.564 4.564 12 H 0.067 0.933 13 C -0.181 4.181 14 N -0.551 5.551 15 Si 0.779 3.221 16 H -0.198 1.198 17 H -0.201 1.201 18 H -0.204 1.204 19 C -0.047 4.047 20 N -0.313 5.313 21 C -0.025 4.025 22 H 0.135 0.865 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.175 0.825 26 H 0.177 0.823 27 H 0.120 0.880 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.153 0.847 32 H 0.124 0.876 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.369 2.420 0.881 14.598 hybrid contribution 0.343 -1.834 -0.234 1.881 sum -14.026 0.586 0.646 14.053 Atomic orbital electron populations 1.23333 0.76399 1.05404 1.02343 1.86039 1.23672 1.27158 1.89045 1.19073 0.91723 0.85233 0.97456 1.21361 1.00839 0.91411 1.09728 1.21175 0.92899 0.98270 0.96756 1.20752 0.94883 0.96524 1.05810 1.19992 0.96737 0.92021 0.94091 1.20429 0.91927 0.98395 1.08089 1.18286 0.87149 0.95985 0.95834 0.97239 1.21362 0.91808 1.19462 1.23748 0.93340 1.25677 0.97166 0.97845 0.97416 1.69988 1.02869 1.40416 1.41841 0.85566 0.78203 0.79207 0.79093 1.19832 1.20104 1.20403 1.21856 0.99152 0.88568 0.95101 1.61152 1.12129 1.49635 1.08384 1.20945 0.87797 0.91575 1.02164 0.86499 0.91415 0.91689 0.82480 0.82341 0.87965 0.92654 0.94404 0.90526 0.84744 0.87586 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.82 113.37 1.11 1.50 16 2 O -0.34 -11.42 10.50 -92.43 -0.97 -12.39 16 3 C 0.11 4.04 6.68 22.46 0.15 4.19 16 4 C -0.22 -6.29 9.04 22.32 0.20 -6.09 16 5 C -0.07 -2.13 9.64 22.32 0.22 -1.91 16 6 C -0.18 -6.55 5.80 -19.84 -0.11 -6.66 16 7 C -0.03 -1.27 5.44 -19.85 -0.11 -1.38 16 8 C -0.17 -7.60 8.68 22.43 0.19 -7.41 16 9 C 0.05 2.44 2.26 -12.31 -0.03 2.41 16 10 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 11 C -0.53 -29.74 7.78 25.60 0.20 -29.54 16 12 H 0.05 2.80 6.78 -2.91 -0.02 2.78 16 13 C 0.02 1.03 5.30 84.65 0.45 1.48 16 14 N -0.91 -52.43 11.44 21.45 0.25 -52.19 16 15 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 16 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 C 0.08 4.02 5.52 86.22 0.48 4.50 16 20 N -0.69 -27.03 6.96 -518.27 -3.61 -30.63 16 21 C 0.10 3.46 6.34 85.59 0.54 4.00 16 22 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 23 H 0.07 1.12 7.67 -2.39 -0.02 1.10 16 24 H 0.06 1.12 7.67 -2.39 -0.02 1.10 16 25 H 0.16 3.28 6.32 -2.91 -0.02 3.27 16 26 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 27 H 0.10 5.06 7.14 -2.91 -0.02 5.04 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.04 1.91 8.02 -2.38 -0.02 1.89 16 30 H 0.08 4.16 6.40 -2.39 -0.02 4.14 16 31 H 0.34 12.81 8.74 -89.70 -0.78 12.03 16 32 H 0.11 2.72 8.13 -2.38 -0.02 2.70 16 33 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -64.97 269.71 1.32 -63.65 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.34 Total: 19.88 kcal Atomic # 6 Polarization: -38.21 SS G_CDS: 3.29 Total: -34.92 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -3.36 Total: -82.82 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.97 Total: -12.39 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -64.97 1.32 -63.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260648800.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.435 kcal (2) G-P(sol) polarization free energy of solvation -64.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds