Wall clock time and date at job start Mon Mar 30 2020 03:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35904 * 116.99696 * 2 1 4 4 C 1.38555 * 119.87373 * 0.02600 * 3 2 1 5 5 C 1.38120 * 119.80925 * 179.97438 * 4 3 2 6 6 C 1.38105 * 119.88788 * 0.08010 * 5 4 3 7 7 C 1.38672 * 120.46758 * 359.97438 * 6 5 4 8 8 C 1.37782 * 119.88833 * 359.88877 * 7 6 5 9 9 C 1.50612 * 121.87659 * 180.24526 * 8 7 6 10 10 N 1.46630 * 110.49565 * 342.41998 * 9 8 7 11 11 C 1.47162 * 110.25298 * 52.50258 * 10 9 8 12 12 H 1.08998 * 109.62703 * 48.65761 * 11 10 9 13 13 C 1.50694 * 109.63431 * 169.05321 * 11 10 9 14 14 H 1.08000 * 120.00563 * 119.99853 * 13 11 10 15 15 C 1.37885 * 119.99902 * 300.00017 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.50733 * 118.46929 * 179.57907 * 7 6 5 22 22 H 1.09004 * 109.46603 * 299.99874 * 1 2 3 23 23 H 1.08992 * 109.47142 * 59.99698 * 1 2 3 24 24 H 1.08999 * 109.47055 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.09615 * 359.97438 * 4 3 2 26 26 H 1.08006 * 120.05902 * 180.02562 * 5 4 3 27 27 H 1.08002 * 119.76448 * 180.02562 * 6 5 4 28 28 H 1.08998 * 109.27372 * 222.15471 * 9 8 7 29 29 H 1.09006 * 109.26532 * 102.67911 * 9 8 7 30 30 H 1.00902 * 110.99898 * 289.07815 * 10 9 8 31 31 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 32 32 H 1.09000 * 109.37440 * 43.16349 * 21 7 6 33 33 H 1.08999 * 109.40269 * 283.46163 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2887 2.3713 0.0005 5 6 1.9171 3.6013 0.0011 6 6 3.2965 3.6694 -0.0006 7 6 4.0577 2.5102 -0.0023 8 6 3.4361 1.2806 0.0000 9 6 4.2187 -0.0062 0.0038 10 7 5.6046 0.2345 -0.4103 11 6 6.1984 1.3107 0.3989 12 1 6.0078 1.1221 1.4554 13 6 7.6844 1.3667 0.1547 14 1 8.1333 2.2662 -0.2400 15 6 8.4710 0.2695 0.4351 16 7 7.9245 -0.8257 0.9162 17 14 10.3129 0.3388 0.1316 18 1 10.9264 -0.9590 0.5119 19 1 10.5679 0.6048 -1.3069 20 1 10.9087 1.4258 0.9493 21 6 5.5596 2.6370 -0.0138 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2103 2.3141 0.0006 26 1 1.3308 4.5083 0.0019 27 1 3.7858 4.6322 0.0002 28 1 3.7546 -0.7116 -0.6855 29 1 4.2117 -0.4285 1.0087 30 1 5.6553 0.4519 -1.3943 31 1 8.4779 -1.5977 1.1131 32 1 5.8621 3.4172 0.6847 33 1 5.8929 2.9026 -1.0171 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260682481.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:34 Heat of formation + Delta-G solvation = -12.092650 kcal Electronic energy + Delta-G solvation = -16261.716872 eV Core-core repulsion = 13673.331584 eV Total energy + Delta-G solvation = -2588.385288 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.11518 -37.84886 -35.58093 -32.44097 -31.29757 -30.04091 -28.31529 -27.10736 -24.93878 -23.44598 -21.55809 -21.34156 -19.13295 -17.44758 -16.44891 -15.92149 -15.56912 -15.31626 -14.44648 -14.05340 -13.66127 -13.52456 -13.18981 -12.83038 -12.68794 -12.07050 -11.78421 -11.63819 -11.28544 -10.94119 -10.82366 -10.73271 -10.65566 -10.48507 -10.21173 -9.64767 -8.91922 -8.34751 -8.13114 -7.76176 -6.85769 -5.81344 -3.95867 1.70838 1.78707 3.39402 3.44357 3.46297 3.49752 4.09797 4.52649 5.00296 5.12666 5.17552 5.20848 5.35786 5.44379 5.48575 5.65354 5.77343 5.90449 6.01220 6.23893 6.32739 6.44918 6.48433 6.59477 6.71591 6.83833 6.88697 7.14690 7.25374 7.51253 7.69772 7.96541 8.28056 8.63054 8.91876 9.17752 9.72604 11.23421 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.042225 B = 0.006828 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.959162 B = 4099.975941 C = 4678.346438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.123 3.877 4 C -0.224 4.224 5 C -0.093 4.093 6 C -0.162 4.162 7 C -0.031 4.031 8 C -0.137 4.137 9 C 0.105 3.895 10 N -0.639 5.639 11 C 0.221 3.779 12 H 0.040 0.960 13 C -0.536 4.536 14 H 0.054 0.946 15 C 0.084 3.916 16 N -0.848 5.848 17 Si 0.884 3.116 18 H -0.289 1.289 19 H -0.278 1.278 20 H -0.279 1.279 21 C -0.113 4.113 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.096 0.904 25 H 0.119 0.881 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.317 0.683 31 H 0.256 0.744 32 H 0.068 0.932 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.336 4.624 -1.965 14.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.078 3.922 4 C -0.243 4.243 5 C -0.112 4.112 6 C -0.180 4.180 7 C -0.032 4.032 8 C -0.140 4.140 9 C -0.026 4.026 10 N -0.265 5.265 11 C 0.113 3.887 12 H 0.058 0.942 13 C -0.575 4.575 14 H 0.072 0.928 15 C -0.123 4.123 16 N -0.482 5.482 17 Si 0.712 3.288 18 H -0.214 1.214 19 H -0.204 1.204 20 H -0.205 1.205 21 C -0.152 4.152 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.114 0.886 25 H 0.137 0.863 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.134 0.866 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.933 3.680 -1.498 13.530 hybrid contribution 0.043 1.085 -0.515 1.202 sum -12.890 4.765 -2.013 13.889 Atomic orbital electron populations 1.22972 0.79317 1.03420 1.00858 1.86096 1.20509 1.27197 1.88798 1.19027 0.91964 0.83792 0.97433 1.21019 0.99231 0.92665 1.11379 1.20725 0.94560 0.96522 0.99344 1.21056 0.93585 0.98098 1.05247 1.19905 0.97259 0.91195 0.94797 1.20409 0.90686 0.98562 1.04311 1.20822 0.89276 0.90971 1.01543 1.61341 1.11185 1.47401 1.06600 1.19167 0.93238 0.82191 0.94071 0.94221 1.20888 0.90819 0.99388 1.46405 0.92783 1.24950 0.97600 0.95418 0.94297 1.70086 1.34584 1.02558 1.41016 0.86836 0.86379 0.77027 0.78605 1.21426 1.20375 1.20468 1.21474 0.88384 1.03575 1.01771 0.93063 0.93131 0.88593 0.86281 0.86584 0.86478 0.91522 0.90736 0.86637 0.93412 0.91338 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -5.01 9.60 -19.44 -0.19 -5.20 16 3 C 0.12 2.15 6.65 -39.11 -0.26 1.88 16 4 C -0.22 -3.36 9.03 -39.51 -0.36 -3.72 16 5 C -0.09 -1.38 10.04 -39.67 -0.40 -1.77 16 6 C -0.16 -2.68 9.65 -39.47 -0.38 -3.06 16 7 C -0.03 -0.61 5.77 -104.61 -0.60 -1.21 16 8 C -0.14 -2.70 5.80 -104.48 -0.61 -3.31 16 9 C 0.10 2.25 5.95 -5.17 -0.03 2.22 16 10 N -0.64 -15.45 5.89 -109.35 -0.64 -16.10 16 11 C 0.22 5.53 2.31 -68.78 -0.16 5.38 16 12 H 0.04 1.11 8.05 -51.93 -0.42 0.69 16 13 C -0.54 -14.65 8.75 -34.44 -0.30 -14.95 16 14 H 0.05 1.44 7.75 -52.49 -0.41 1.03 16 15 C 0.08 2.35 5.39 -17.82 -0.10 2.25 16 16 N -0.85 -24.78 12.78 55.43 0.71 -24.08 16 17 Si 0.88 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.11 -2.37 5.08 -27.92 -0.14 -2.51 16 22 H 0.05 0.49 7.65 -51.93 -0.40 0.10 16 23 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 24 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.12 1.43 6.28 -52.49 -0.33 1.10 16 26 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 27 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.07 1.36 7.81 -51.93 -0.41 0.95 16 29 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 30 H 0.32 7.39 8.74 -39.29 -0.34 7.05 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.07 1.45 8.11 -51.93 -0.42 1.03 16 LS Contribution 274.24 15.07 4.13 4.13 Total: -1.00 -30.04 274.24 -7.72 -37.76 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -4.37 Total: 4.74 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: -2.34 Total: -17.49 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.06 Total: -40.17 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.19 Total: -5.20 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.04 -7.72 -37.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260682481.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.665 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds