Wall clock time and date at job start Mon Mar 30 2020 03:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35904 * 116.99696 * 2 1 4 4 C 1.38555 * 119.87373 * 0.02600 * 3 2 1 5 5 C 1.38120 * 119.80925 * 179.97438 * 4 3 2 6 6 C 1.38105 * 119.88788 * 0.08010 * 5 4 3 7 7 C 1.38672 * 120.46758 * 359.97438 * 6 5 4 8 8 C 1.37782 * 119.88833 * 359.88877 * 7 6 5 9 9 C 1.50612 * 121.87659 * 180.24526 * 8 7 6 10 10 N 1.46630 * 110.49565 * 342.41998 * 9 8 7 11 11 C 1.47162 * 110.25298 * 52.50258 * 10 9 8 12 12 H 1.08998 * 109.62703 * 48.65761 * 11 10 9 13 13 C 1.50694 * 109.63431 * 169.05321 * 11 10 9 14 14 H 1.08000 * 120.00563 * 119.99853 * 13 11 10 15 15 C 1.37885 * 119.99902 * 300.00017 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.50733 * 118.46929 * 179.57907 * 7 6 5 22 22 H 1.09004 * 109.46603 * 299.99874 * 1 2 3 23 23 H 1.08992 * 109.47142 * 59.99698 * 1 2 3 24 24 H 1.08999 * 109.47055 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.09615 * 359.97438 * 4 3 2 26 26 H 1.08006 * 120.05902 * 180.02562 * 5 4 3 27 27 H 1.08002 * 119.76448 * 180.02562 * 6 5 4 28 28 H 1.08998 * 109.27372 * 222.15471 * 9 8 7 29 29 H 1.09006 * 109.26532 * 102.67911 * 9 8 7 30 30 H 1.00902 * 110.99898 * 289.07815 * 10 9 8 31 31 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 32 32 H 1.09000 * 109.37440 * 43.16349 * 21 7 6 33 33 H 1.08999 * 109.40269 * 283.46163 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2887 2.3713 0.0005 5 6 1.9171 3.6013 0.0011 6 6 3.2965 3.6694 -0.0006 7 6 4.0577 2.5102 -0.0023 8 6 3.4361 1.2806 0.0000 9 6 4.2187 -0.0062 0.0038 10 7 5.6046 0.2345 -0.4103 11 6 6.1984 1.3107 0.3989 12 1 6.0078 1.1221 1.4554 13 6 7.6844 1.3667 0.1547 14 1 8.1333 2.2662 -0.2400 15 6 8.4710 0.2695 0.4351 16 7 7.9245 -0.8257 0.9162 17 14 10.3129 0.3388 0.1316 18 1 10.9264 -0.9590 0.5119 19 1 10.5679 0.6048 -1.3069 20 1 10.9087 1.4258 0.9493 21 6 5.5596 2.6370 -0.0138 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.2103 2.3141 0.0006 26 1 1.3308 4.5083 0.0019 27 1 3.7858 4.6322 0.0002 28 1 3.7546 -0.7116 -0.6855 29 1 4.2117 -0.4285 1.0087 30 1 5.6553 0.4519 -1.3943 31 1 8.4779 -1.5977 1.1131 32 1 5.8621 3.4172 0.6847 33 1 5.8929 2.9026 -1.0171 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260682481.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:34 Heat of formation + Delta-G solvation = -32.021273 kcal Electronic energy + Delta-G solvation = -16262.581042 eV Core-core repulsion = 13673.331584 eV Total energy + Delta-G solvation = -2589.249458 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.42516 -39.22145 -37.12935 -34.42460 -32.85422 -31.56424 -29.85378 -28.09918 -26.83942 -25.05729 -23.24352 -22.68188 -20.76076 -18.91288 -18.21168 -17.22454 -16.72414 -16.61234 -16.37915 -15.66939 -15.31421 -14.99807 -14.51657 -14.36292 -14.14890 -13.87870 -13.26298 -12.86366 -12.79504 -12.66757 -12.52033 -12.39070 -12.14241 -11.89745 -11.75822 -11.59496 -10.94128 -10.49425 -9.53048 -9.03239 -8.70396 -7.93759 -6.16255 0.39376 0.50728 1.47175 1.48828 1.55923 2.42566 2.50165 2.79579 3.26419 3.88324 3.89548 4.00043 4.14358 4.33643 4.39933 4.41912 4.48509 4.53898 4.55672 4.73392 4.76194 4.85841 4.89675 5.08072 5.20882 5.39239 5.47988 5.52087 5.77667 5.81108 5.90672 6.22214 6.52071 6.62806 7.02131 7.13639 7.56607 9.10037 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.042225 B = 0.006828 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.959162 B = 4099.975941 C = 4678.346438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.119 3.881 4 C -0.216 4.216 5 C -0.080 4.080 6 C -0.167 4.167 7 C -0.053 4.053 8 C -0.170 4.170 9 C 0.117 3.883 10 N -0.658 5.658 11 C 0.222 3.778 12 H -0.003 1.003 13 C -0.552 4.552 14 H 0.057 0.943 15 C 0.032 3.968 16 N -0.885 5.885 17 Si 0.953 3.047 18 H -0.288 1.288 19 H -0.271 1.271 20 H -0.271 1.271 21 C -0.100 4.100 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.116 0.884 25 H 0.156 0.844 26 H 0.159 0.841 27 H 0.137 0.863 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.320 0.680 31 H 0.254 0.746 32 H 0.072 0.928 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.110 6.366 -2.658 16.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.073 3.927 4 C -0.234 4.234 5 C -0.098 4.098 6 C -0.185 4.185 7 C -0.053 4.053 8 C -0.173 4.173 9 C -0.014 4.014 10 N -0.284 5.284 11 C 0.115 3.885 12 H 0.015 0.985 13 C -0.590 4.590 14 H 0.075 0.925 15 C -0.171 4.171 16 N -0.520 5.520 17 Si 0.778 3.222 18 H -0.214 1.214 19 H -0.197 1.197 20 H -0.196 1.196 21 C -0.139 4.139 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.134 0.866 25 H 0.174 0.826 26 H 0.176 0.824 27 H 0.155 0.845 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.136 0.864 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.724 5.436 -2.195 15.848 hybrid contribution 0.439 0.535 -0.281 0.747 sum -14.284 5.971 -2.476 15.679 Atomic orbital electron populations 1.23342 0.76464 1.05413 1.02297 1.86068 1.23490 1.26978 1.88601 1.19078 0.91261 0.85289 0.97065 1.21440 1.00978 0.91680 1.09343 1.21213 0.93926 0.98066 0.96559 1.21268 0.94644 0.97659 1.04920 1.19823 0.96231 0.92418 0.96878 1.20192 0.92152 0.97416 1.07512 1.20523 0.88421 0.92629 0.99804 1.61136 1.13244 1.47569 1.06500 1.18927 0.92966 0.84756 0.91889 0.98525 1.21300 0.92315 0.99486 1.45926 0.92459 1.25753 1.02227 0.95054 0.94076 1.70246 1.36202 1.03220 1.42366 0.85735 0.80718 0.77015 0.78694 1.21388 1.19657 1.19641 1.21185 0.90069 1.00999 1.01667 0.91641 0.91424 0.86621 0.82630 0.82368 0.84531 0.91103 0.93667 0.86411 0.93660 0.90963 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.34 -10.41 9.60 -92.47 -0.89 -11.30 16 3 C 0.12 3.97 6.65 22.57 0.15 4.12 16 4 C -0.22 -5.64 9.03 22.32 0.20 -5.44 16 5 C -0.08 -2.00 10.04 22.21 0.22 -1.78 16 6 C -0.17 -5.11 9.65 22.34 0.22 -4.89 16 7 C -0.05 -2.05 5.77 -19.86 -0.11 -2.17 16 8 C -0.17 -6.80 5.80 -19.77 -0.11 -6.91 16 9 C 0.12 5.28 5.95 85.58 0.51 5.79 16 10 N -0.66 -33.43 5.89 -499.86 -2.94 -36.38 16 11 C 0.22 11.69 2.31 44.08 0.10 11.79 16 12 H 0.00 -0.19 8.05 -2.39 -0.02 -0.21 16 13 C -0.55 -31.00 8.75 25.60 0.22 -30.77 16 14 H 0.06 3.10 7.75 -2.91 -0.02 3.07 16 15 C 0.03 1.84 5.39 84.66 0.46 2.30 16 16 N -0.88 -53.61 12.78 21.45 0.27 -53.34 16 17 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 18 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 19 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 C -0.10 -4.29 5.08 29.82 0.15 -4.14 16 22 H 0.06 1.03 7.65 -2.39 -0.02 1.01 16 23 H 0.07 1.03 7.65 -2.39 -0.02 1.01 16 24 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.16 2.89 6.28 -2.91 -0.02 2.87 16 26 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 27 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 28 H 0.07 3.03 7.81 -2.39 -0.02 3.01 16 29 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.32 15.57 8.74 -89.69 -0.78 14.78 16 31 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 33 H 0.07 2.98 8.11 -2.39 -0.02 2.96 16 Total: -1.00 -67.34 274.24 1.91 -65.43 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.33 Total: 19.82 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 3.12 Total: -30.65 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -2.67 Total: -89.71 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -0.89 Total: -11.30 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -67.34 1.91 -65.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260682481.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.408 kcal (2) G-P(sol) polarization free energy of solvation -67.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds