Wall clock time and date at job start Mon Mar 30 2020 03:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35902 * 117.00123 * 2 1 4 4 C 1.38555 * 119.86872 * 359.97438 * 3 2 1 5 5 C 1.38131 * 119.80790 * 180.02562 * 4 3 2 6 6 C 1.38108 * 119.88814 * 359.90834 * 5 4 3 7 7 C 1.38679 * 120.46509 * 0.22709 * 6 5 4 8 8 C 1.37779 * 119.88135 * 359.67812 * 7 6 5 9 9 C 1.50614 * 121.86840 * 179.87587 * 8 7 6 10 10 N 1.46627 * 110.50053 * 17.88182 * 9 8 7 11 11 C 1.47156 * 110.25770 * 307.49384 * 10 9 8 12 12 H 1.09008 * 109.62601 * 311.31373 * 11 10 9 13 13 C 1.50705 * 109.63259 * 190.92890 * 11 10 9 14 14 H 1.07993 * 119.99892 * 239.99826 * 13 11 10 15 15 C 1.37879 * 120.00038 * 59.99688 * 13 11 10 16 16 N 1.31516 * 120.00042 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00003 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46990 * 59.99403 * 17 15 13 19 19 H 1.48495 * 109.47444 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46927 * 300.00251 * 17 15 13 21 21 C 1.50735 * 118.46746 * 180.65093 * 7 6 5 22 22 H 1.08997 * 109.46780 * 60.00248 * 1 2 3 23 23 H 1.08999 * 109.46800 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46673 * 300.00309 * 1 2 3 25 25 H 1.08004 * 120.10019 * 0.10355 * 4 3 2 26 26 H 1.07997 * 120.06047 * 179.88421 * 5 4 3 27 27 H 1.08002 * 119.76320 * 179.97438 * 6 5 4 28 28 H 1.09000 * 109.27629 * 138.15180 * 9 8 7 29 29 H 1.09009 * 109.26803 * 257.65718 * 9 8 7 30 30 H 1.00905 * 111.00030 * 70.91312 * 10 9 8 31 31 H 0.97000 * 119.99684 * 180.02562 * 16 15 13 32 32 H 1.08998 * 109.58287 * 76.26627 * 21 7 6 33 33 H 1.08992 * 109.17033 * 316.47961 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2888 2.3712 -0.0005 5 6 1.9172 3.6013 -0.0011 6 6 3.2966 3.6693 0.0008 7 6 4.0578 2.5101 -0.0014 8 6 3.4360 1.2806 0.0011 9 6 4.2186 -0.0062 -0.0040 10 7 5.6044 0.2339 0.4104 11 6 6.1986 1.3107 -0.3976 12 1 6.0084 1.1230 -1.4544 13 6 7.6846 1.3665 -0.1527 14 1 8.1332 2.2656 0.2429 15 6 8.4712 0.2696 -0.4338 16 7 7.9249 -0.8252 -0.9160 17 14 10.3130 0.3385 -0.1296 18 1 10.5674 0.6034 1.3093 19 1 10.9264 -0.9594 -0.5095 20 1 10.9091 1.4263 -0.9461 21 6 5.5597 2.6368 0.0159 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 0.2102 2.3141 0.0007 26 1 1.3309 4.5082 -0.0034 27 1 3.7859 4.6322 0.0000 28 1 3.7544 -0.7124 0.6845 29 1 4.2121 -0.4272 -1.0095 30 1 5.6552 0.4503 1.3947 31 1 8.4783 -1.5970 -1.1134 32 1 5.8925 2.9014 1.0195 33 1 5.8612 3.4171 -0.6828 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260682484.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:36 Heat of formation + Delta-G solvation = -32.015306 kcal Electronic energy + Delta-G solvation = -16262.603133 eV Core-core repulsion = 13673.353933 eV Total energy + Delta-G solvation = -2589.249199 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.42567 -39.22209 -37.12896 -34.42453 -32.85508 -31.56435 -29.85375 -28.09934 -26.83959 -25.05659 -23.24281 -22.68129 -20.76085 -18.91363 -18.21097 -17.22469 -16.72618 -16.61086 -16.37911 -15.66945 -15.31413 -14.99803 -14.51389 -14.36443 -14.15057 -13.87879 -13.26386 -12.86162 -12.79488 -12.66915 -12.52083 -12.39191 -12.14002 -11.89607 -11.76114 -11.59287 -10.94099 -10.49418 -9.53071 -9.03270 -8.70391 -7.93729 -6.16249 0.39352 0.50730 1.47150 1.48836 1.55944 2.42558 2.50173 2.79563 3.26450 3.88345 3.89552 4.00022 4.14382 4.33649 4.39965 4.41915 4.48515 4.53902 4.55752 4.73390 4.76269 4.85789 4.89570 5.08012 5.20951 5.39235 5.47991 5.52063 5.77640 5.81146 5.90645 6.22195 6.52097 6.62822 7.02146 7.13649 7.56640 9.10064 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.042226 B = 0.006827 C = 0.005984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.939593 B = 4100.078797 C = 4678.379195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.119 3.881 4 C -0.216 4.216 5 C -0.080 4.080 6 C -0.167 4.167 7 C -0.053 4.053 8 C -0.170 4.170 9 C 0.117 3.883 10 N -0.658 5.658 11 C 0.222 3.778 12 H -0.003 1.003 13 C -0.552 4.552 14 H 0.057 0.943 15 C 0.032 3.968 16 N -0.885 5.885 17 Si 0.953 3.047 18 H -0.271 1.271 19 H -0.288 1.288 20 H -0.271 1.271 21 C -0.100 4.100 22 H 0.065 0.935 23 H 0.116 0.884 24 H 0.067 0.933 25 H 0.156 0.844 26 H 0.159 0.841 27 H 0.137 0.863 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.320 0.680 31 H 0.254 0.746 32 H 0.072 0.928 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.111 6.366 2.660 16.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.073 3.927 4 C -0.234 4.234 5 C -0.098 4.098 6 C -0.185 4.185 7 C -0.054 4.054 8 C -0.173 4.173 9 C -0.014 4.014 10 N -0.284 5.284 11 C 0.114 3.886 12 H 0.015 0.985 13 C -0.590 4.590 14 H 0.075 0.925 15 C -0.171 4.171 16 N -0.520 5.520 17 Si 0.778 3.222 18 H -0.197 1.197 19 H -0.214 1.214 20 H -0.196 1.196 21 C -0.139 4.139 22 H 0.084 0.916 23 H 0.134 0.866 24 H 0.086 0.914 25 H 0.174 0.826 26 H 0.176 0.824 27 H 0.155 0.845 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.136 0.864 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.725 5.436 2.196 15.850 hybrid contribution 0.439 0.535 0.278 0.746 sum -14.286 5.971 2.475 15.680 Atomic orbital electron populations 1.23342 0.76464 1.05413 1.02296 1.86066 1.23490 1.26981 1.88600 1.19073 0.91262 0.85289 0.97061 1.21444 1.00978 0.91681 1.09344 1.21215 0.93926 0.98064 0.96557 1.21272 0.94644 0.97660 1.04920 1.19830 0.96238 0.92417 0.96870 1.20189 0.92153 0.97418 1.07516 1.20524 0.88423 0.92634 0.99797 1.61136 1.13237 1.47551 1.06520 1.18931 0.92968 0.84759 0.91894 0.98532 1.21300 0.92322 0.99519 1.45882 0.92457 1.25751 1.02225 0.95054 0.94079 1.70246 1.36202 1.03248 1.42344 0.85736 0.80722 0.77017 0.78693 1.19667 1.21387 1.19631 1.21185 0.90068 1.00995 1.01665 0.91641 0.86620 0.91424 0.82628 0.82370 0.84531 0.91098 0.93673 0.86411 0.93661 0.90981 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.34 -10.41 9.60 -92.44 -0.89 -11.30 16 3 C 0.12 3.97 6.65 22.57 0.15 4.12 16 4 C -0.22 -5.64 9.03 22.32 0.20 -5.44 16 5 C -0.08 -2.00 10.04 22.21 0.22 -1.78 16 6 C -0.17 -5.11 9.65 22.34 0.22 -4.89 16 7 C -0.05 -2.05 5.77 -19.86 -0.11 -2.17 16 8 C -0.17 -6.80 5.80 -19.78 -0.11 -6.91 16 9 C 0.12 5.28 5.95 85.58 0.51 5.79 16 10 N -0.66 -33.43 5.89 -499.84 -2.94 -36.37 16 11 C 0.22 11.68 2.31 44.09 0.10 11.78 16 12 H 0.00 -0.20 8.05 -2.38 -0.02 -0.22 16 13 C -0.55 -30.99 8.75 25.60 0.22 -30.77 16 14 H 0.06 3.10 7.75 -2.91 -0.02 3.07 16 15 C 0.03 1.84 5.39 84.65 0.46 2.30 16 16 N -0.88 -53.62 12.78 21.45 0.27 -53.34 16 17 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 21 C -0.10 -4.29 5.08 29.82 0.15 -4.14 16 22 H 0.06 1.03 7.65 -2.39 -0.02 1.01 16 23 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.07 1.03 7.65 -2.39 -0.02 1.01 16 25 H 0.16 2.89 6.28 -2.91 -0.02 2.87 16 26 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 27 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 28 H 0.07 3.03 7.81 -2.39 -0.02 3.01 16 29 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.32 15.57 8.74 -89.69 -0.78 14.78 16 31 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 32 H 0.07 3.00 8.11 -2.39 -0.02 2.98 16 33 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -67.35 274.24 1.91 -65.43 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.33 Total: 19.82 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 3.12 Total: -30.65 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -2.67 Total: -89.71 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -0.89 Total: -11.30 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -67.35 1.91 -65.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260682484.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.418 kcal (2) G-P(sol) polarization free energy of solvation -67.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds